Wall clock time and date at job start Mon Mar 30 2020 01:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00044 * 2 1 4 4 H 1.48501 * 109.47520 * 239.99702 * 3 2 1 5 5 H 1.48506 * 109.47241 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47251 * 119.99496 * 3 2 1 7 7 C 1.37884 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99798 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99918 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46539 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99578 * 180.02562 * 10 9 7 12 12 O 1.21575 * 119.99806 * 0.02562 * 11 10 9 13 13 N 1.34771 * 119.99865 * 179.97438 * 11 10 9 14 14 C 1.39397 * 119.99900 * 185.09104 * 13 11 10 15 15 C 1.38913 * 119.79425 * 174.91515 * 14 13 11 16 16 C 1.38755 * 119.29025 * 179.97438 * 15 14 13 17 17 C 1.38090 * 118.56394 * 359.79796 * 16 15 14 18 18 C 1.38609 * 119.04158 * 0.29324 * 17 16 15 19 19 N 1.31749 * 121.13816 * 359.83764 * 18 17 16 20 20 C 1.50486 * 122.47438 * 180.34105 * 17 16 15 21 21 C 1.52789 * 110.47811 * 342.27670 * 20 17 16 22 22 C 1.53321 * 108.53169 * 51.10103 * 21 20 17 23 23 C 1.50358 * 118.64801 * 179.50697 * 16 15 14 24 24 H 0.96992 * 120.00054 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46801 * 60.00534 * 9 7 2 26 26 H 1.08993 * 109.47148 * 300.00173 * 9 7 2 27 27 H 0.96996 * 120.00877 * 359.97438 * 10 9 7 28 28 H 0.97000 * 119.99987 * 5.09171 * 13 11 10 29 29 H 1.08008 * 120.35501 * 0.02562 * 15 14 13 30 30 H 1.08008 * 119.43068 * 179.80434 * 18 17 16 31 31 H 1.09003 * 109.30544 * 102.58175 * 20 17 16 32 32 H 1.09000 * 109.30158 * 221.96966 * 20 17 16 33 33 H 1.09003 * 109.62984 * 170.81725 * 21 20 17 34 34 H 1.09001 * 109.62694 * 291.39157 * 21 20 17 35 35 H 1.08992 * 109.63914 * 170.42125 * 22 21 20 36 36 H 1.08998 * 109.64304 * 49.80039 * 22 21 20 37 37 H 1.09002 * 109.30801 * 282.99078 * 23 16 15 38 38 H 1.09004 * 109.30293 * 42.39115 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 1.7539 -4.8834 0.0033 12 8 0.5586 -5.1055 0.0026 13 7 2.6297 -5.9077 0.0037 14 6 2.1687 -7.2189 -0.1028 15 6 3.0779 -8.2638 -0.2086 16 6 2.6075 -9.5650 -0.3135 17 6 1.2429 -9.7765 -0.3047 18 6 0.3937 -8.6862 -0.1981 19 7 0.8673 -7.4605 -0.1025 20 6 0.6376 -11.1505 -0.4057 21 6 1.6622 -12.1478 -0.9444 22 6 2.9454 -12.0242 -0.1144 23 6 3.6041 -10.6839 -0.4386 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8881 26 1 0.6247 -2.5563 0.8919 27 1 3.1568 -3.4355 0.0022 28 1 3.5808 -5.7326 0.0781 29 1 4.1396 -8.0656 -0.2083 30 1 -0.6748 -8.8441 -0.1938 31 1 0.3066 -11.4720 0.5818 32 1 -0.2206 -11.1177 -1.0770 33 1 1.2674 -13.1602 -0.8597 34 1 1.8786 -11.9224 -1.9886 35 1 3.6254 -12.8374 -0.3679 36 1 2.7006 -12.0649 0.9470 37 1 3.9912 -10.7096 -1.4572 38 1 4.4287 -10.5109 0.2530 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336407386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:51 Heat of formation + Delta-G solvation = -26.345764 kcal Electronic energy + Delta-G solvation = -20251.288267 eV Core-core repulsion = 17092.131717 eV Total energy + Delta-G solvation = -3159.156550 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.98366 -40.64882 -37.91887 -36.15589 -35.63844 -34.32448 -33.47535 -31.71776 -30.01680 -28.75778 -25.21843 -25.16533 -23.74119 -23.66410 -21.95436 -20.50655 -19.99193 -18.61038 -18.06563 -17.05416 -16.74400 -16.68795 -16.42397 -15.94914 -15.63937 -15.27881 -14.91386 -14.88705 -14.66810 -14.07290 -14.04433 -13.91775 -13.46755 -13.16647 -13.04717 -12.92044 -12.67650 -12.23428 -11.79209 -11.74094 -11.51197 -11.47429 -11.43250 -11.28904 -10.79697 -10.30842 -9.96701 -9.89513 -9.01879 -8.28840 -6.46060 0.16310 0.41620 1.42450 1.48041 1.54667 1.61043 2.16693 2.38396 2.95230 3.06090 3.21681 3.60849 3.75344 3.89714 4.00397 4.05864 4.11253 4.42651 4.48722 4.61609 4.69489 4.73253 4.86171 4.99635 5.04700 5.09715 5.10733 5.20636 5.24169 5.32520 5.41431 5.44697 5.51947 5.57997 5.62332 5.81397 5.93358 6.03110 6.64599 6.97098 7.23430 7.38933 7.68786 8.83506 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.056560 B = 0.002971 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.932492 B = 9421.112740 C = 9853.545535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.989 3.011 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.556 4.556 8 H 0.086 0.914 9 C 0.287 3.713 10 N -0.717 5.717 11 C 0.680 3.320 12 O -0.591 6.591 13 N -0.658 5.658 14 C 0.347 3.653 15 C -0.203 4.203 16 C -0.012 4.012 17 C -0.162 4.162 18 C 0.111 3.889 19 N -0.529 5.529 20 C -0.071 4.071 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.079 4.079 24 H 0.269 0.731 25 H -0.015 1.015 26 H -0.015 1.015 27 H 0.406 0.594 28 H 0.430 0.570 29 H 0.167 0.833 30 H 0.158 0.842 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.813 -25.583 -1.094 28.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.811 3.189 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.104 0.896 9 C 0.164 3.836 10 N -0.372 5.372 11 C 0.380 3.620 12 O -0.467 6.467 13 N -0.309 5.309 14 C 0.117 3.883 15 C -0.226 4.226 16 C -0.020 4.020 17 C -0.166 4.166 18 C -0.048 4.048 19 N -0.244 5.244 20 C -0.108 4.108 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.116 4.116 24 H 0.078 0.922 25 H 0.003 0.997 26 H 0.003 0.997 27 H 0.242 0.758 28 H 0.269 0.731 29 H 0.185 0.815 30 H 0.176 0.824 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.112 0.888 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.005 -24.793 -1.029 26.756 hybrid contribution 0.890 0.940 0.035 1.295 sum 10.895 -23.854 -0.994 26.243 Atomic orbital electron populations 1.70146 1.08369 1.28704 1.49797 1.26108 0.95795 1.03993 0.93796 0.85155 0.77845 0.76331 0.79541 1.18560 1.21109 1.18557 1.21570 0.94391 0.90287 1.53154 0.89578 1.18424 0.88036 0.83157 0.93961 1.45343 1.11130 1.03344 1.77401 1.16427 0.85373 0.81483 0.78764 1.90960 1.15731 1.83870 1.56118 1.42534 1.10621 1.02434 1.75288 1.18527 0.89780 0.84549 0.95486 1.21659 1.00906 0.91178 1.08862 1.20038 0.94126 0.94528 0.93288 1.20741 0.93720 0.97568 1.04589 1.22973 1.01044 0.86176 0.94634 1.67520 1.15067 1.25285 1.16510 1.20384 0.98662 0.89272 1.02521 1.21577 0.95193 0.99173 0.99610 1.21588 0.97208 0.96419 1.00342 1.20572 0.95810 0.91365 1.03846 0.92198 0.99713 0.99668 0.75812 0.73052 0.81532 0.82434 0.89926 0.90212 0.89655 0.91802 0.89253 0.91773 0.88786 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.46 13.29 21.45 0.28 -57.18 16 2 C 0.00 0.15 5.46 84.66 0.46 0.61 16 3 Si 0.99 42.81 29.54 68.60 2.03 44.83 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 7 C -0.56 -30.88 9.28 25.60 0.24 -30.64 16 8 H 0.09 4.26 7.60 -2.91 -0.02 4.24 16 9 C 0.29 16.47 5.43 85.63 0.46 16.94 16 10 N -0.72 -32.29 5.55 -482.31 -2.68 -34.97 16 11 C 0.68 30.99 8.52 179.05 1.53 32.51 16 12 O -0.59 -33.37 14.61 -3.95 -0.06 -33.43 16 13 N -0.66 -21.89 5.40 -322.31 -1.74 -23.63 16 14 C 0.35 11.52 7.42 132.89 0.99 12.51 16 15 C -0.20 -4.60 9.57 22.56 0.22 -4.39 16 16 C -0.01 -0.23 5.74 -19.88 -0.11 -0.35 16 17 C -0.16 -3.61 5.74 -19.88 -0.11 -3.73 16 18 C 0.11 3.35 10.79 84.79 0.91 4.26 16 19 N -0.53 -20.86 7.89 -192.84 -1.52 -22.38 16 20 C -0.07 -1.04 5.71 29.71 0.17 -0.87 16 21 C -0.12 -1.22 5.97 30.63 0.18 -1.04 16 22 C -0.12 -1.09 5.98 30.64 0.18 -0.90 16 23 C -0.08 -0.90 5.71 29.68 0.17 -0.73 16 24 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 25 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 26 H -0.01 -0.95 8.14 -2.39 -0.02 -0.96 16 27 H 0.41 14.68 8.34 -92.71 -0.77 13.90 16 28 H 0.43 9.83 8.72 -92.71 -0.81 9.02 16 29 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 30 H 0.16 4.24 8.06 -2.91 -0.02 4.22 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.10 8.13 -2.39 -0.02 1.08 16 33 H 0.08 0.61 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.70 8.10 -2.39 -0.02 0.69 16 35 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.06 0.65 8.10 -2.39 -0.02 0.63 16 37 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -82.33 319.30 1.10 -81.23 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -0.49 Total: 21.33 kcal Atomic # 6 Polarization: 18.91 SS G_CDS: 5.28 Total: 24.19 kcal Atomic # 7 Polarization: -132.50 SS G_CDS: -5.65 Total: -138.16 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -0.06 Total: -33.43 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -82.33 1.10 -81.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336407386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.881 kcal (2) G-P(sol) polarization free energy of solvation -82.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds