Wall clock time and date at job start Mon Mar 30 2020 01:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00062 * 2 1 4 4 H 1.48493 * 109.47299 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47314 * 300.00403 * 3 2 1 6 6 H 1.48503 * 109.46821 * 60.00521 * 3 2 1 7 7 C 1.37877 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00195 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00036 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47120 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99609 * 179.97438 * 10 9 7 12 12 O 1.21581 * 120.00445 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99385 * 179.97438 * 11 10 9 14 14 C 1.47423 * 125.65378 * 0.03939 * 13 11 10 15 15 C 1.54910 * 104.83385 * 155.83370 * 14 13 11 16 16 C 1.55153 * 101.57931 * 37.01658 * 15 14 13 17 17 C 1.47029 * 125.64782 * 179.97438 * 13 11 10 18 18 H 1.09001 * 109.88118 * 300.66976 * 17 13 11 19 19 C 1.50703 * 109.87648 * 61.67768 * 17 13 11 20 20 C 1.38678 * 120.41597 * 218.84626 * 19 17 13 21 21 C 1.38625 * 118.42134 * 180.31328 * 20 19 17 22 22 C 1.38223 * 119.15978 * 359.43227 * 21 20 19 23 23 N 1.31855 * 120.76605 * 0.26226 * 22 21 20 24 24 C 1.31884 * 121.72525 * 0.02562 * 23 22 21 25 25 H 0.96999 * 120.00412 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47274 * 59.99515 * 9 7 2 27 27 H 1.09002 * 109.46850 * 299.99952 * 9 7 2 28 28 H 0.96996 * 120.00192 * 359.97438 * 10 9 7 29 29 H 1.09000 * 110.36988 * 274.68009 * 14 13 11 30 30 H 1.09001 * 110.36176 * 36.88805 * 14 13 11 31 31 H 1.09007 * 111.00119 * 155.08650 * 15 14 13 32 32 H 1.08992 * 111.00719 * 278.93544 * 15 14 13 33 33 H 1.09000 * 110.71895 * 206.13306 * 16 15 14 34 34 H 1.08998 * 110.72606 * 82.86207 * 16 15 14 35 35 H 1.08003 * 120.78579 * 0.02562 * 20 19 17 36 36 H 1.08002 * 120.42343 * 179.71721 * 21 20 19 37 37 H 1.08005 * 119.61951 * 180.28273 * 22 21 20 38 38 H 1.07997 * 119.62350 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 1.7537 -4.8834 -0.0033 12 8 0.5584 -5.1055 -0.0035 13 7 2.6295 -5.9077 -0.0047 14 6 4.0984 -5.7824 -0.0050 15 6 4.6099 -7.1107 0.6064 16 6 3.5996 -8.1324 0.0210 17 6 2.2783 -7.3355 -0.0050 18 1 1.6830 -7.5709 0.8772 19 6 1.5016 -7.6718 -1.2519 20 6 0.4359 -8.5575 -1.1977 21 6 -0.2456 -8.8424 -2.3708 22 6 0.1494 -8.2293 -3.5450 23 7 1.1639 -7.3872 -3.5580 24 6 1.8385 -7.0971 -2.4625 25 1 -0.4851 0.8400 0.0004 26 1 0.6246 -2.5563 -0.8919 27 1 0.6240 -2.5574 0.8880 28 1 3.1567 -3.4355 -0.0029 29 1 4.4691 -5.6658 -1.0233 30 1 4.4070 -4.9365 0.6094 31 1 5.6243 -7.3293 0.2726 32 1 4.5551 -7.0866 1.6947 33 1 3.5116 -9.0032 0.6705 34 1 3.8912 -8.4293 -0.9864 35 1 0.1467 -9.0180 -0.2646 36 1 -1.0776 -9.5310 -2.3666 37 1 -0.3792 -8.4424 -4.4624 38 1 2.6636 -6.4020 -2.5120 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336418413.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:27 Heat of formation + Delta-G solvation = 8.486141 kcal Electronic energy + Delta-G solvation = -21151.179959 eV Core-core repulsion = 17993.533834 eV Total energy + Delta-G solvation = -3157.646125 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.60763 -39.22063 -37.23259 -34.17071 -32.89429 -32.27101 -31.51682 -31.15227 -28.12806 -27.01825 -24.02353 -23.48000 -22.77162 -21.97249 -20.85606 -19.21853 -18.07653 -17.13860 -16.57441 -16.01384 -15.57338 -15.43613 -14.78090 -14.52304 -14.18892 -13.96411 -13.54202 -13.34071 -13.08132 -12.94551 -12.84264 -12.37531 -12.25733 -11.94223 -11.66354 -11.40566 -11.19935 -10.97862 -10.90444 -10.89348 -10.28000 -9.69948 -9.40624 -9.36800 -9.33317 -8.85983 -8.71572 -8.41040 -7.72353 -6.13540 -4.20061 1.21237 1.40356 3.11112 3.25431 3.32615 3.35860 3.88281 3.92773 4.32956 4.38669 4.49058 4.58555 4.76020 4.86206 4.91922 5.00339 5.11213 5.13590 5.22702 5.30056 5.41803 5.57245 5.57907 5.62190 5.72379 5.82525 5.92757 6.02586 6.18691 6.32813 6.49981 6.80544 7.19672 7.53043 7.58506 7.59620 7.89599 8.04413 8.10317 8.77907 8.92262 9.34396 9.49812 10.96842 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021000 B = 0.004629 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.035532 B = 6047.806494 C = 6825.914858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.267 3.733 10 N -0.726 5.726 11 C 0.711 3.289 12 O -0.590 6.590 13 N -0.641 5.641 14 C 0.098 3.902 15 C -0.130 4.130 16 C -0.122 4.122 17 C 0.201 3.799 18 H 0.081 0.919 19 C -0.129 4.129 20 C -0.064 4.064 21 C -0.174 4.174 22 C 0.090 3.910 23 N -0.485 5.485 24 C 0.121 3.879 25 H 0.265 0.735 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.386 0.614 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.152 0.848 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.359 -19.017 -0.874 20.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.146 3.854 10 N -0.378 5.378 11 C 0.413 3.587 12 O -0.468 6.468 13 N -0.381 5.381 14 C -0.026 4.026 15 C -0.168 4.168 16 C -0.160 4.160 17 C 0.095 3.905 18 H 0.099 0.901 19 C -0.132 4.132 20 C -0.090 4.090 21 C -0.194 4.194 22 C -0.067 4.067 23 N -0.194 5.194 24 C -0.036 4.036 25 H 0.075 0.925 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.219 0.781 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.169 0.831 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.448 -18.504 -1.664 20.016 hybrid contribution 0.453 0.737 0.800 1.178 sum 7.901 -17.767 -0.865 19.463 Atomic orbital electron populations 1.69991 1.06107 1.27143 1.49055 1.24943 0.94898 0.99398 0.94771 0.86358 0.79804 0.82993 0.77728 1.19648 1.20804 1.20819 1.21246 0.93260 0.90385 1.52974 0.91932 1.18988 0.87771 0.81041 0.97563 1.45744 1.10843 1.04134 1.77094 1.15688 0.84262 0.80403 0.78388 1.90888 1.13690 1.83685 1.58542 1.47766 1.05569 1.04440 1.80371 1.22256 0.80997 0.98577 1.00732 1.22759 0.98891 0.94066 1.01053 1.22701 0.93220 0.97857 1.02249 1.20100 0.95064 0.80884 0.94442 0.90060 1.21099 0.97478 0.97852 0.96762 1.21366 0.93304 0.95825 0.98524 1.22050 1.01327 1.02210 0.93842 1.22709 0.93504 0.92583 0.97868 1.67678 1.07064 1.13609 1.31004 1.22442 0.97709 0.96088 0.87400 0.92527 0.95796 0.95788 0.78145 0.91730 0.90534 0.89811 0.90392 0.89816 0.90385 0.85081 0.85020 0.83117 0.83524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.54 -14.94 9.28 -34.44 -0.32 -15.26 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.27 7.34 5.43 -5.19 -0.03 7.32 16 10 N -0.73 -16.09 5.51 -66.41 -0.37 -16.46 16 11 C 0.71 15.20 8.13 -86.92 -0.71 14.49 16 12 O -0.59 -15.19 16.18 5.29 0.09 -15.11 16 13 N -0.64 -9.98 2.34 -170.00 -0.40 -10.37 16 14 C 0.10 1.10 6.58 -2.53 -0.02 1.08 16 15 C -0.13 -1.05 7.08 -24.58 -0.17 -1.23 16 16 C -0.12 -1.07 6.46 -24.90 -0.16 -1.23 16 17 C 0.20 2.62 3.07 -68.10 -0.21 2.41 16 18 H 0.08 1.10 8.05 -51.93 -0.42 0.68 16 19 C -0.13 -1.85 4.09 -104.48 -0.43 -2.28 16 20 C -0.06 -0.82 9.83 -39.28 -0.39 -1.21 16 21 C -0.17 -2.10 10.11 -39.44 -0.40 -2.50 16 22 C 0.09 1.22 11.18 -17.55 -0.20 1.02 16 23 N -0.49 -7.91 10.36 -13.25 -0.14 -8.04 16 24 C 0.12 1.92 10.33 -17.55 -0.18 1.74 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.39 7.39 6.80 -40.82 -0.28 7.11 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.85 7.29 -51.93 -0.38 0.47 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.66 7.81 -51.93 -0.41 0.26 16 35 H 0.13 1.37 8.06 -52.48 -0.42 0.94 16 36 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.15 1.57 8.06 -52.48 -0.42 1.14 16 38 H 0.15 2.29 7.69 -52.49 -0.40 1.89 16 LS Contribution 322.15 15.07 4.85 4.85 Total: -1.00 -35.21 322.15 -8.77 -43.98 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.22 Total: 4.84 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -3.30 Total: 6.05 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -0.16 Total: -60.71 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.09 Total: -15.11 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.21 -8.77 -43.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336418413.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.466 kcal (2) G-P(sol) polarization free energy of solvation -35.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds