Wall clock time and date at job start Mon Mar 30 2020 01:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00062 * 2 1 4 4 H 1.48493 * 109.47299 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47314 * 300.00403 * 3 2 1 6 6 H 1.48503 * 109.46821 * 60.00521 * 3 2 1 7 7 C 1.37877 * 119.99943 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00195 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00036 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47120 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99609 * 179.97438 * 10 9 7 12 12 O 1.21581 * 120.00445 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99385 * 179.97438 * 11 10 9 14 14 C 1.47423 * 125.65378 * 0.03939 * 13 11 10 15 15 C 1.54910 * 104.83385 * 155.83370 * 14 13 11 16 16 C 1.55153 * 101.57931 * 37.01658 * 15 14 13 17 17 C 1.47029 * 125.64782 * 179.97438 * 13 11 10 18 18 H 1.09001 * 109.88118 * 300.66976 * 17 13 11 19 19 C 1.50703 * 109.87648 * 61.67768 * 17 13 11 20 20 C 1.38678 * 120.41597 * 218.84626 * 19 17 13 21 21 C 1.38625 * 118.42134 * 180.31328 * 20 19 17 22 22 C 1.38223 * 119.15978 * 359.43227 * 21 20 19 23 23 N 1.31855 * 120.76605 * 0.26226 * 22 21 20 24 24 C 1.31884 * 121.72525 * 0.02562 * 23 22 21 25 25 H 0.96999 * 120.00412 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.47274 * 59.99515 * 9 7 2 27 27 H 1.09002 * 109.46850 * 299.99952 * 9 7 2 28 28 H 0.96996 * 120.00192 * 359.97438 * 10 9 7 29 29 H 1.09000 * 110.36988 * 274.68009 * 14 13 11 30 30 H 1.09001 * 110.36176 * 36.88805 * 14 13 11 31 31 H 1.09007 * 111.00119 * 155.08650 * 15 14 13 32 32 H 1.08992 * 111.00719 * 278.93544 * 15 14 13 33 33 H 1.09000 * 110.71895 * 206.13306 * 16 15 14 34 34 H 1.08998 * 110.72606 * 82.86207 * 16 15 14 35 35 H 1.08003 * 120.78579 * 0.02562 * 20 19 17 36 36 H 1.08002 * 120.42343 * 179.71721 * 21 20 19 37 37 H 1.08005 * 119.61951 * 180.28273 * 22 21 20 38 38 H 1.07997 * 119.62350 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 1.7537 -4.8834 -0.0033 12 8 0.5584 -5.1055 -0.0035 13 7 2.6295 -5.9077 -0.0047 14 6 4.0984 -5.7824 -0.0050 15 6 4.6099 -7.1107 0.6064 16 6 3.5996 -8.1324 0.0210 17 6 2.2783 -7.3355 -0.0050 18 1 1.6830 -7.5709 0.8772 19 6 1.5016 -7.6718 -1.2519 20 6 0.4359 -8.5575 -1.1977 21 6 -0.2456 -8.8424 -2.3708 22 6 0.1494 -8.2293 -3.5450 23 7 1.1639 -7.3872 -3.5580 24 6 1.8385 -7.0971 -2.4625 25 1 -0.4851 0.8400 0.0004 26 1 0.6246 -2.5563 -0.8919 27 1 0.6240 -2.5574 0.8880 28 1 3.1567 -3.4355 -0.0029 29 1 4.4691 -5.6658 -1.0233 30 1 4.4070 -4.9365 0.6094 31 1 5.6243 -7.3293 0.2726 32 1 4.5551 -7.0866 1.6947 33 1 3.5116 -9.0032 0.6705 34 1 3.8912 -8.4293 -0.9864 35 1 0.1467 -9.0180 -0.2646 36 1 -1.0776 -9.5310 -2.3666 37 1 -0.3792 -8.4424 -4.4624 38 1 2.6636 -6.4020 -2.5120 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336418413.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:26 Heat of formation + Delta-G solvation = -16.007754 kcal Electronic energy + Delta-G solvation = -21152.242094 eV Core-core repulsion = 17993.533834 eV Total energy + Delta-G solvation = -3158.708260 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.78792 -40.55834 -38.56951 -36.15985 -34.53055 -33.72275 -32.53088 -32.42712 -29.28776 -28.86884 -25.39280 -24.60236 -24.35589 -23.19798 -21.88783 -20.82755 -19.55095 -18.20519 -18.06688 -17.64489 -17.02160 -16.69404 -16.46924 -15.96541 -15.55261 -15.14189 -14.92200 -14.51690 -14.20678 -14.14209 -14.09392 -13.98521 -13.82103 -13.20148 -13.16940 -12.85539 -12.75454 -12.25505 -12.22214 -12.06096 -11.67479 -11.46472 -11.21632 -10.83108 -10.71463 -10.47775 -10.07922 -9.91183 -9.40120 -8.30210 -6.47170 0.15735 0.35222 1.42010 1.44230 1.57183 1.73064 2.21243 2.37545 2.84385 3.04870 3.27225 3.46962 3.64645 3.70773 3.80326 3.98024 4.08908 4.13040 4.22013 4.41064 4.57309 4.62557 4.73181 4.85464 4.91482 4.99184 5.03091 5.11942 5.16907 5.23173 5.25057 5.36562 5.40688 5.49388 5.70332 5.78976 5.83153 6.20824 6.64797 7.01873 7.17850 7.23483 7.70243 8.82679 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021000 B = 0.004629 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.035532 B = 6047.806494 C = 6825.914858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.988 3.012 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.553 4.553 8 H 0.083 0.917 9 C 0.289 3.711 10 N -0.722 5.722 11 C 0.708 3.292 12 O -0.642 6.642 13 N -0.633 5.633 14 C 0.085 3.915 15 C -0.115 4.115 16 C -0.109 4.109 17 C 0.192 3.808 18 H 0.076 0.924 19 C -0.139 4.139 20 C -0.075 4.075 21 C -0.167 4.167 22 C 0.074 3.926 23 N -0.518 5.518 24 C 0.095 3.905 25 H 0.269 0.731 26 H -0.021 1.021 27 H -0.015 1.015 28 H 0.402 0.598 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.156 0.844 36 H 0.169 0.831 37 H 0.178 0.822 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.711 -20.131 -0.394 22.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.811 3.189 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.591 4.591 8 H 0.101 0.899 9 C 0.165 3.835 10 N -0.376 5.376 11 C 0.409 3.591 12 O -0.524 6.524 13 N -0.371 5.371 14 C -0.037 4.037 15 C -0.153 4.153 16 C -0.146 4.146 17 C 0.087 3.913 18 H 0.094 0.906 19 C -0.142 4.142 20 C -0.102 4.102 21 C -0.186 4.186 22 C -0.082 4.082 23 N -0.227 5.227 24 C -0.062 4.062 25 H 0.078 0.922 26 H -0.003 1.003 27 H 0.002 0.998 28 H 0.238 0.762 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.134 0.866 32 H 0.103 0.897 33 H 0.130 0.870 34 H 0.101 0.899 35 H 0.174 0.826 36 H 0.186 0.814 37 H 0.195 0.805 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.893 -19.683 -1.180 22.061 hybrid contribution -0.343 0.962 0.623 1.197 sum 9.550 -18.721 -0.557 21.023 Atomic orbital electron populations 1.70158 1.08378 1.28550 1.49989 1.26093 0.95778 1.03960 0.93755 0.85067 0.79083 0.77062 0.77722 1.17502 1.20494 1.20250 1.21602 0.94250 0.90362 1.52904 0.89859 1.18371 0.88042 0.83445 0.93592 1.45325 1.10773 1.03718 1.77792 1.15829 0.84298 0.81001 0.77942 1.90835 1.16361 1.84580 1.60644 1.47698 1.06949 1.04306 1.78139 1.22649 0.78095 1.01016 1.01957 1.22768 1.00041 0.91244 1.01235 1.22706 0.90452 0.98105 1.03373 1.20470 0.97542 0.79653 0.93643 0.90593 1.21272 0.98203 0.98127 0.96559 1.21797 0.92758 0.95598 1.00028 1.22467 1.01548 1.01729 0.92866 1.23257 0.93063 0.92174 0.99742 1.67617 1.08443 1.15010 1.31666 1.22404 0.98392 0.97108 0.88284 0.92217 1.00311 0.99754 0.76249 0.90685 0.90305 0.86635 0.89714 0.87026 0.89893 0.82632 0.81391 0.80531 0.84541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.72 13.29 21.45 0.28 -57.44 16 2 C 0.00 0.20 5.46 84.65 0.46 0.66 16 3 Si 0.99 43.12 29.54 68.60 2.03 45.15 16 4 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 6 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.55 -31.10 9.28 25.60 0.24 -30.87 16 8 H 0.08 4.23 7.60 -2.91 -0.02 4.21 16 9 C 0.29 16.76 5.43 85.63 0.46 17.22 16 10 N -0.72 -33.21 5.51 -482.29 -2.66 -35.87 16 11 C 0.71 31.45 8.13 179.05 1.46 32.90 16 12 O -0.64 -34.90 16.18 -3.97 -0.06 -34.96 16 13 N -0.63 -19.66 2.34 -810.03 -1.90 -21.55 16 14 C 0.08 1.76 6.58 86.86 0.57 2.33 16 15 C -0.12 -1.46 7.08 31.98 0.23 -1.23 16 16 C -0.11 -1.57 6.46 31.78 0.21 -1.36 16 17 C 0.19 4.83 3.07 44.59 0.14 4.97 16 18 H 0.08 2.00 8.05 -2.39 -0.02 1.98 16 19 C -0.14 -3.97 4.09 -19.77 -0.08 -4.05 16 20 C -0.08 -1.87 9.83 22.47 0.22 -1.64 16 21 C -0.17 -3.76 10.11 22.36 0.23 -3.53 16 22 C 0.07 1.96 11.18 84.69 0.95 2.91 16 23 N -0.52 -17.26 10.36 -195.84 -2.03 -19.29 16 24 C 0.09 3.09 10.33 84.67 0.87 3.97 16 25 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 26 H -0.02 -1.39 8.14 -2.39 -0.02 -1.41 16 27 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 28 H 0.40 15.52 6.80 -92.71 -0.63 14.89 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.08 1.62 7.29 -2.39 -0.02 1.60 16 31 H 0.12 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 1.17 7.81 -2.39 -0.02 1.16 16 35 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 36 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 37 H 0.18 3.47 8.06 -2.91 -0.02 3.44 16 38 H 0.14 4.48 7.69 -2.91 -0.02 4.46 16 Total: -1.00 -81.87 322.15 2.05 -79.82 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.43 Total: 21.86 kcal Atomic # 6 Polarization: 16.33 SS G_CDS: 5.95 Total: 22.28 kcal Atomic # 7 Polarization: -127.85 SS G_CDS: -6.30 Total: -134.15 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -0.06 Total: -34.96 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -81.87 2.05 -79.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336418413.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.812 kcal (2) G-P(sol) polarization free energy of solvation -81.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds