Wall clock time and date at job start Mon Mar 30 2020 02:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00218 * 2 1 4 4 H 1.48507 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47276 * 299.99557 * 3 2 1 6 6 H 1.48494 * 109.47527 * 59.99820 * 3 2 1 7 7 C 1.37881 * 119.99429 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99672 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00434 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47509 * 179.97438 * 9 7 2 11 11 C 1.34768 * 119.99993 * 180.02562 * 10 9 7 12 12 O 1.21587 * 120.00511 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99764 * 180.02562 * 11 10 9 14 14 C 1.47423 * 125.64938 * 359.94685 * 13 11 10 15 15 C 1.54904 * 104.83440 * 155.91456 * 14 13 11 16 16 C 1.55164 * 101.57813 * 37.01438 * 15 14 13 17 17 C 1.47021 * 125.64833 * 180.02562 * 13 11 10 18 18 H 1.09002 * 109.88291 * 300.42971 * 17 13 11 19 19 C 1.50697 * 110.01237 * 61.52334 * 17 13 11 20 20 C 1.38655 * 120.78805 * 37.92010 * 19 17 13 21 21 C 1.38207 * 119.15861 * 179.79805 * 20 19 17 22 22 N 1.31871 * 120.76694 * 0.48985 * 21 20 19 23 23 C 1.31863 * 121.72489 * 359.73678 * 22 21 20 24 24 C 1.38206 * 120.76658 * 0.02919 * 23 22 21 25 25 H 0.97004 * 119.99667 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.46984 * 60.00246 * 9 7 2 27 27 H 1.08995 * 109.47199 * 300.00314 * 9 7 2 28 28 H 0.97002 * 119.99222 * 0.02562 * 10 9 7 29 29 H 1.09002 * 110.36732 * 37.07287 * 14 13 11 30 30 H 1.09001 * 110.36870 * 274.75966 * 14 13 11 31 31 H 1.08991 * 111.00901 * 278.93570 * 15 14 13 32 32 H 1.09000 * 111.03530 * 155.09641 * 15 14 13 33 33 H 1.09002 * 110.71540 * 206.13553 * 16 15 14 34 34 H 1.08995 * 110.87180 * 82.93022 * 16 15 14 35 35 H 1.08001 * 120.41697 * 0.02562 * 20 19 17 36 36 H 1.08003 * 119.61301 * 180.20538 * 21 20 19 37 37 H 1.07998 * 119.62029 * 180.02562 * 23 22 21 38 38 H 1.07998 * 120.42566 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 1.7535 -4.8834 0.0000 12 8 0.5581 -5.1055 -0.0009 13 7 2.6293 -5.9079 0.0005 14 6 4.0982 -5.7826 0.0006 15 6 4.6096 -7.1107 0.6123 16 6 3.5992 -8.1325 0.0269 17 6 2.2780 -7.3355 -0.0005 18 1 1.6843 -7.5718 0.8826 19 6 1.5005 -7.6744 -1.2461 20 6 1.8220 -7.0935 -2.4634 21 6 1.0893 -7.4318 -3.5854 22 7 0.0895 -8.2880 -3.5053 23 6 -0.2471 -8.8561 -2.3639 24 6 0.4431 -8.5700 -1.2012 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8898 27 1 0.6239 -2.5567 0.8902 28 1 3.1565 -3.4355 0.0009 29 1 4.4069 -4.9377 0.6162 30 1 4.4691 -5.6663 -1.0178 31 1 4.5545 -7.0863 1.7005 32 1 5.6240 -7.3298 0.2793 33 1 3.5112 -9.0032 0.6768 34 1 3.8894 -8.4323 -0.9800 35 1 2.6370 -6.3885 -2.5346 36 1 1.3355 -6.9863 -4.5379 37 1 -1.0718 -9.5530 -2.3373 38 1 0.1624 -9.0382 -0.2693 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336546430.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:23 Heat of formation + Delta-G solvation = 8.052150 kcal Electronic energy + Delta-G solvation = -21137.108636 eV Core-core repulsion = 17979.443692 eV Total energy + Delta-G solvation = -3157.664945 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.59780 -39.25859 -37.28786 -34.21063 -33.01451 -32.26371 -31.28127 -31.00351 -28.50828 -27.04706 -24.11038 -23.36866 -22.79197 -22.00049 -20.88564 -19.27228 -18.13470 -17.08462 -16.24153 -15.94717 -15.63663 -15.47105 -14.95739 -14.57074 -14.28208 -13.97482 -13.55313 -13.54123 -13.31668 -12.94829 -12.85806 -12.41421 -11.96921 -11.76976 -11.71064 -11.49425 -11.34369 -10.95419 -10.92763 -10.91348 -10.30322 -9.61209 -9.39785 -9.36076 -9.27490 -9.01129 -8.74134 -8.47590 -7.75974 -6.15893 -4.22609 1.27631 1.35778 3.07678 3.23500 3.30776 3.33790 3.85401 3.92793 4.30479 4.35708 4.46508 4.56737 4.63832 4.81326 4.90420 5.00780 5.16606 5.20336 5.24845 5.30302 5.37206 5.53898 5.58290 5.67667 5.72971 5.75918 5.90430 5.97975 6.10505 6.35706 6.52347 6.81797 7.16517 7.49932 7.55900 7.56284 7.86670 8.01719 8.08208 8.75020 8.89170 9.31386 9.47066 10.94434 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020918 B = 0.004613 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.266035 B = 6067.874405 C = 6856.240761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.726 5.726 11 C 0.711 3.289 12 O -0.589 6.589 13 N -0.639 5.639 14 C 0.099 3.901 15 C -0.130 4.130 16 C -0.122 4.122 17 C 0.194 3.806 18 H 0.083 0.917 19 C -0.034 4.034 20 C -0.149 4.149 21 C 0.096 3.904 22 N -0.490 5.490 23 C 0.095 3.905 24 C -0.161 4.161 25 H 0.265 0.735 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.386 0.614 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.128 0.872 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.945 -17.664 -0.937 20.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.378 5.378 11 C 0.412 3.588 12 O -0.467 6.467 13 N -0.380 5.380 14 C -0.025 4.025 15 C -0.168 4.168 16 C -0.160 4.160 17 C 0.089 3.911 18 H 0.101 0.899 19 C -0.043 4.043 20 C -0.169 4.169 21 C -0.060 4.060 22 N -0.200 5.200 23 C -0.062 4.062 24 C -0.181 4.181 25 H 0.075 0.925 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.218 0.782 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.146 0.854 36 H 0.169 0.831 37 H 0.170 0.830 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.321 -17.748 -1.683 19.674 hybrid contribution 1.256 1.400 0.781 2.036 sum 9.577 -16.348 -0.902 18.968 Atomic orbital electron populations 1.69994 1.06108 1.27171 1.48960 1.24946 0.94900 0.99405 0.94753 0.86359 0.79784 0.82979 0.77757 1.19658 1.20789 1.20801 1.21240 0.93242 0.90378 1.53085 0.91952 1.18990 0.87760 0.81024 0.97584 1.45746 1.10839 1.04124 1.77108 1.15692 0.84263 0.80403 0.78406 1.90899 1.13656 1.83661 1.58489 1.47735 1.05562 1.04336 1.80368 1.22246 0.80991 0.98579 1.00658 1.22759 0.98879 0.94039 1.01090 1.22688 0.93088 0.97865 1.02324 1.20197 0.95244 0.81056 0.94599 0.89866 1.20520 0.94665 0.93879 0.95232 1.21874 1.01666 1.00291 0.93102 1.22674 0.91085 0.93833 0.98453 1.67619 1.15017 1.08801 1.28540 1.22644 0.98152 0.97455 0.87958 1.21919 0.96376 0.99787 1.00037 0.92500 0.95787 0.95781 0.78165 0.90540 0.91789 0.90354 0.89787 0.89744 0.90349 0.85387 0.83074 0.83032 0.85061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 8 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 9 C 0.27 7.26 5.43 -5.19 -0.03 7.23 16 10 N -0.73 -15.84 5.51 -66.41 -0.37 -16.20 16 11 C 0.71 14.98 8.13 -86.92 -0.71 14.28 16 12 O -0.59 -15.04 16.18 5.29 0.09 -14.96 16 13 N -0.64 -9.79 2.40 -170.01 -0.41 -10.20 16 14 C 0.10 1.09 6.57 -2.53 -0.02 1.07 16 15 C -0.13 -1.03 7.09 -24.58 -0.17 -1.20 16 16 C -0.12 -1.04 6.47 -24.89 -0.16 -1.20 16 17 C 0.19 2.51 3.08 -68.11 -0.21 2.30 16 18 H 0.08 1.12 8.06 -51.93 -0.42 0.71 16 19 C -0.03 -0.47 4.11 -104.32 -0.43 -0.90 16 20 C -0.15 -2.16 9.28 -39.44 -0.37 -2.53 16 21 C 0.10 1.38 11.18 -17.55 -0.20 1.19 16 22 N -0.49 -7.45 10.36 -13.25 -0.14 -7.59 16 23 C 0.09 1.27 11.18 -17.55 -0.20 1.07 16 24 C -0.16 -2.11 9.79 -39.44 -0.39 -2.50 16 25 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.39 7.26 6.80 -40.82 -0.28 6.98 16 29 H 0.08 0.83 7.30 -51.93 -0.38 0.46 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.65 7.83 -51.93 -0.41 0.24 16 35 H 0.13 1.78 7.76 -52.49 -0.41 1.37 16 36 H 0.15 1.81 8.06 -52.48 -0.42 1.39 16 37 H 0.15 1.56 8.06 -52.49 -0.42 1.13 16 38 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 322.33 15.07 4.86 4.86 Total: -1.00 -34.81 322.33 -8.77 -43.57 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -5.23 Total: 4.89 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -3.29 Total: 5.35 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.17 Total: -59.61 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: 0.09 Total: -14.96 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.81 -8.77 -43.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336546430.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.625 kcal (2) G-P(sol) polarization free energy of solvation -34.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds