Wall clock time and date at job start Mon Mar 30 2020 02:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00218 * 2 1 4 4 H 1.48507 * 109.47173 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47276 * 299.99557 * 3 2 1 6 6 H 1.48494 * 109.47527 * 59.99820 * 3 2 1 7 7 C 1.37881 * 119.99429 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99672 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00434 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47509 * 179.97438 * 9 7 2 11 11 C 1.34768 * 119.99993 * 180.02562 * 10 9 7 12 12 O 1.21587 * 120.00511 * 0.02562 * 11 10 9 13 13 N 1.34784 * 119.99764 * 180.02562 * 11 10 9 14 14 C 1.47423 * 125.64938 * 359.94685 * 13 11 10 15 15 C 1.54904 * 104.83440 * 155.91456 * 14 13 11 16 16 C 1.55164 * 101.57813 * 37.01438 * 15 14 13 17 17 C 1.47021 * 125.64833 * 180.02562 * 13 11 10 18 18 H 1.09002 * 109.88291 * 300.42971 * 17 13 11 19 19 C 1.50697 * 110.01237 * 61.52334 * 17 13 11 20 20 C 1.38655 * 120.78805 * 37.92010 * 19 17 13 21 21 C 1.38207 * 119.15861 * 179.79805 * 20 19 17 22 22 N 1.31871 * 120.76694 * 0.48985 * 21 20 19 23 23 C 1.31863 * 121.72489 * 359.73678 * 22 21 20 24 24 C 1.38206 * 120.76658 * 0.02919 * 23 22 21 25 25 H 0.97004 * 119.99667 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.46984 * 60.00246 * 9 7 2 27 27 H 1.08995 * 109.47199 * 300.00314 * 9 7 2 28 28 H 0.97002 * 119.99222 * 0.02562 * 10 9 7 29 29 H 1.09002 * 110.36732 * 37.07287 * 14 13 11 30 30 H 1.09001 * 110.36870 * 274.75966 * 14 13 11 31 31 H 1.08991 * 111.00901 * 278.93570 * 15 14 13 32 32 H 1.09000 * 111.03530 * 155.09641 * 15 14 13 33 33 H 1.09002 * 110.71540 * 206.13553 * 16 15 14 34 34 H 1.08995 * 110.87180 * 82.93022 * 16 15 14 35 35 H 1.08001 * 120.41697 * 0.02562 * 20 19 17 36 36 H 1.08003 * 119.61301 * 180.20538 * 21 20 19 37 37 H 1.07998 * 119.62029 * 180.02562 * 23 22 21 38 38 H 1.07998 * 120.42566 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 6 1.7535 -4.8834 0.0000 12 8 0.5581 -5.1055 -0.0009 13 7 2.6293 -5.9079 0.0005 14 6 4.0982 -5.7826 0.0006 15 6 4.6096 -7.1107 0.6123 16 6 3.5992 -8.1325 0.0269 17 6 2.2780 -7.3355 -0.0005 18 1 1.6843 -7.5718 0.8826 19 6 1.5005 -7.6744 -1.2461 20 6 1.8220 -7.0935 -2.4634 21 6 1.0893 -7.4318 -3.5854 22 7 0.0895 -8.2880 -3.5053 23 6 -0.2471 -8.8561 -2.3639 24 6 0.4431 -8.5700 -1.2012 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8898 27 1 0.6239 -2.5567 0.8902 28 1 3.1565 -3.4355 0.0009 29 1 4.4069 -4.9377 0.6162 30 1 4.4691 -5.6663 -1.0178 31 1 4.5545 -7.0863 1.7005 32 1 5.6240 -7.3298 0.2793 33 1 3.5112 -9.0032 0.6768 34 1 3.8894 -8.4323 -0.9800 35 1 2.6370 -6.3885 -2.5346 36 1 1.3355 -6.9863 -4.5379 37 1 -1.0718 -9.5530 -2.3373 38 1 0.1624 -9.0382 -0.2693 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336546430.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:22 Heat of formation + Delta-G solvation = -15.819943 kcal Electronic energy + Delta-G solvation = -21138.143808 eV Core-core repulsion = 17979.443692 eV Total energy + Delta-G solvation = -3158.700116 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.77347 -40.57304 -38.61380 -36.16508 -34.57232 -33.78195 -32.47601 -32.09164 -29.56549 -28.96187 -25.43279 -24.56294 -24.32181 -23.20389 -21.90373 -20.84757 -19.59195 -18.15211 -18.06421 -17.38054 -16.92833 -16.57944 -16.51697 -16.20006 -15.70974 -15.13930 -14.91957 -14.55859 -14.34765 -14.24182 -14.15579 -14.09396 -13.74811 -13.21654 -12.88369 -12.75811 -12.63273 -12.45058 -12.25376 -12.09227 -11.65915 -11.46257 -11.23000 -10.83106 -10.59663 -10.41537 -10.07990 -10.06073 -9.44418 -8.30097 -6.47024 0.21052 0.27372 1.42394 1.44350 1.57257 1.71658 2.20350 2.37554 2.84930 3.05143 3.26139 3.49779 3.57978 3.65933 3.76102 3.92084 4.16650 4.17807 4.24658 4.36227 4.55139 4.67864 4.75034 4.81601 4.89432 4.94591 5.01647 5.07798 5.11011 5.23231 5.24340 5.38049 5.41700 5.49983 5.70669 5.77896 5.83231 6.19904 6.65021 7.00776 7.17339 7.23685 7.69754 8.82690 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020918 B = 0.004613 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.266035 B = 6067.874405 C = 6856.240761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.987 3.013 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.288 3.712 10 N -0.721 5.721 11 C 0.708 3.292 12 O -0.642 6.642 13 N -0.631 5.631 14 C 0.086 3.914 15 C -0.116 4.116 16 C -0.108 4.108 17 C 0.185 3.815 18 H 0.076 0.924 19 C -0.046 4.046 20 C -0.164 4.164 21 C 0.082 3.918 22 N -0.514 5.514 23 C 0.087 3.913 24 C -0.168 4.168 25 H 0.269 0.731 26 H -0.019 1.019 27 H -0.017 1.017 28 H 0.402 0.598 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.129 0.871 36 H 0.167 0.833 37 H 0.180 0.820 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.922 -18.318 -0.508 22.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.591 4.591 8 H 0.102 0.898 9 C 0.165 3.835 10 N -0.375 5.375 11 C 0.410 3.590 12 O -0.524 6.524 13 N -0.369 5.369 14 C -0.036 4.036 15 C -0.153 4.153 16 C -0.146 4.146 17 C 0.081 3.919 18 H 0.094 0.906 19 C -0.055 4.055 20 C -0.184 4.184 21 C -0.074 4.074 22 N -0.224 5.224 23 C -0.070 4.070 24 C -0.188 4.188 25 H 0.078 0.922 26 H -0.001 1.001 27 H 0.001 0.999 28 H 0.238 0.762 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.135 0.865 33 H 0.128 0.872 34 H 0.104 0.896 35 H 0.147 0.853 36 H 0.184 0.816 37 H 0.197 0.803 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 11.391 -18.466 -1.254 21.734 hybrid contribution 0.290 1.497 0.652 1.659 sum 11.682 -16.969 -0.602 20.610 Atomic orbital electron populations 1.70162 1.08383 1.28537 1.49989 1.26086 0.95758 1.03943 0.93782 0.85076 0.79107 0.77110 0.77691 1.17456 1.20474 1.20393 1.21599 0.94251 0.90334 1.52881 0.89822 1.18375 0.88039 0.83419 0.93644 1.45312 1.10779 1.03654 1.77753 1.15824 0.84261 0.81005 0.77951 1.90851 1.16392 1.84565 1.60611 1.47656 1.06980 1.04112 1.78180 1.22649 0.77996 1.00903 1.02063 1.22770 1.00061 0.91299 1.01200 1.22703 0.90286 0.98058 1.03568 1.20547 0.97717 0.79945 0.93717 0.90642 1.20787 0.95166 0.94073 0.95522 1.21968 1.02147 1.00746 0.93539 1.22995 0.91116 0.93972 0.99319 1.67655 1.15561 1.09577 1.29607 1.23173 0.98696 0.97473 0.87610 1.22249 0.95862 0.99665 1.01030 0.92235 1.00115 0.99887 0.76216 0.90354 0.90387 0.89850 0.86530 0.87152 0.89598 0.85294 0.81555 0.80278 0.82719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.99 42.52 29.54 68.60 2.03 44.55 16 4 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.55 -30.54 9.28 25.60 0.24 -30.30 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 9 C 0.29 16.44 5.43 85.63 0.46 16.90 16 10 N -0.72 -32.25 5.51 -482.30 -2.66 -34.90 16 11 C 0.71 30.65 8.13 179.05 1.46 32.10 16 12 O -0.64 -34.40 16.18 -3.99 -0.06 -34.46 16 13 N -0.63 -18.89 2.40 -810.05 -1.94 -20.84 16 14 C 0.09 1.67 6.57 86.85 0.57 2.25 16 15 C -0.12 -1.37 7.09 31.99 0.23 -1.14 16 16 C -0.11 -1.48 6.47 31.79 0.21 -1.28 16 17 C 0.18 4.55 3.08 44.59 0.14 4.68 16 18 H 0.08 1.98 8.06 -2.39 -0.02 1.96 16 19 C -0.05 -1.28 4.11 -19.67 -0.08 -1.36 16 20 C -0.16 -4.76 9.28 22.36 0.21 -4.56 16 21 C 0.08 2.39 11.18 84.68 0.95 3.33 16 22 N -0.51 -15.63 10.36 -195.84 -2.03 -17.66 16 23 C 0.09 2.28 11.18 84.68 0.95 3.22 16 24 C -0.17 -4.30 9.79 22.36 0.22 -4.08 16 25 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 26 H -0.02 -1.23 8.14 -2.38 -0.02 -1.25 16 27 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 28 H 0.40 14.99 6.80 -92.71 -0.63 14.36 16 29 H 0.08 1.52 7.30 -2.39 -0.02 1.51 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.09 1.11 7.83 -2.39 -0.02 1.09 16 35 H 0.13 3.58 7.76 -2.91 -0.02 3.56 16 36 H 0.17 4.05 8.06 -2.91 -0.02 4.02 16 37 H 0.18 3.45 8.06 -2.91 -0.02 3.43 16 38 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -79.85 322.33 2.05 -77.80 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.43 Total: 21.94 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: 6.00 Total: 20.45 kcal Atomic # 7 Polarization: -123.93 SS G_CDS: -6.34 Total: -130.27 kcal Atomic # 8 Polarization: -34.40 SS G_CDS: -0.06 Total: -34.46 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -79.85 2.05 -77.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336546430.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.978 kcal (2) G-P(sol) polarization free energy of solvation -79.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds