Wall clock time and date at job start Mon Mar 30 2020 01:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99790 * 2 1 4 4 H 1.09005 * 110.76603 * 31.75537 * 3 2 1 5 5 C 1.54314 * 110.70963 * 268.54710 * 3 2 1 6 6 N 1.47439 * 107.23497 * 219.33268 * 5 3 2 7 7 C 1.46906 * 111.00056 * 236.74195 * 6 5 3 8 8 C 1.53004 * 109.46819 * 169.99932 * 7 6 5 9 9 C 1.53001 * 109.46910 * 179.97438 * 8 7 6 10 10 S 1.80995 * 109.47186 * 180.02562 * 9 8 7 11 11 C 1.76199 * 99.99933 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00353 * 0.02562 * 11 10 9 13 13 C 1.38801 * 119.99705 * 179.97438 * 11 10 9 14 14 N 1.31625 * 120.00132 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99774 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47297 * 179.97438 * 15 13 11 17 17 H 1.48503 * 109.47261 * 60.00133 * 15 13 11 18 18 H 1.48500 * 109.47454 * 300.00126 * 15 13 11 19 19 C 1.47843 * 108.56885 * 359.01312 * 6 5 3 20 20 C 1.54905 * 104.79433 * 24.09350 * 19 6 5 21 21 H 1.08997 * 111.02647 * 81.03605 * 20 19 6 22 22 O 1.42907 * 110.99042 * 204.84225 * 20 19 6 23 23 C 1.42901 * 113.99798 * 262.26766 * 22 20 19 24 24 H 1.08999 * 109.46750 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47022 * 299.99730 * 1 2 3 26 26 H 1.08994 * 109.47580 * 59.99955 * 1 2 3 27 27 H 1.09004 * 109.88574 * 99.92880 * 5 3 2 28 28 H 1.09000 * 109.88817 * 338.74455 * 5 3 2 29 29 H 1.08994 * 109.46660 * 50.00422 * 7 6 5 30 30 H 1.08998 * 109.47231 * 290.00289 * 7 6 5 31 31 H 1.09001 * 109.46462 * 60.00693 * 8 7 6 32 32 H 1.08996 * 109.47005 * 300.00257 * 8 7 6 33 33 H 1.08995 * 109.46972 * 60.00160 * 9 8 7 34 34 H 1.08998 * 109.47245 * 300.00421 * 9 8 7 35 35 H 0.97001 * 120.00200 * 359.97438 * 14 13 11 36 36 H 1.08993 * 110.37490 * 142.92362 * 19 6 5 37 37 H 1.08999 * 110.37148 * 265.26666 * 19 6 5 38 38 H 1.08990 * 109.47205 * 180.02562 * 23 22 20 39 39 H 1.09003 * 109.47031 * 299.99720 * 23 22 20 40 40 H 1.09003 * 109.47184 * 59.99881 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3756 2.0110 0.5364 5 6 2.2655 1.7892 -1.4430 6 7 3.5584 2.4979 -1.4438 7 6 3.4062 3.8701 -1.9458 8 6 4.7003 4.6490 -1.7014 9 6 4.5421 6.0779 -2.2249 10 16 6.0731 6.9991 -1.9364 11 6 5.6223 8.5617 -2.6144 12 1 4.6385 8.7037 -3.0367 13 6 6.5314 9.6106 -2.6049 14 7 7.7303 9.4378 -2.0899 15 14 6.0537 11.2670 -3.3243 16 1 7.1924 12.2111 -3.1921 17 1 4.8785 11.8042 -2.5926 18 1 5.7104 11.1029 -4.7597 19 6 4.0983 2.4941 -0.0674 20 6 3.4343 1.2719 0.6145 21 1 3.9512 0.3489 0.3518 22 8 3.3841 1.4416 2.0326 23 6 4.4426 0.7863 2.7342 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.4706 2.4675 -1.7528 28 1 2.3107 0.9345 -2.1180 29 1 2.5839 4.3589 -1.4235 30 1 3.1938 3.8445 -3.0146 31 1 5.5227 4.1601 -2.2238 32 1 4.9126 4.6745 -0.6326 33 1 3.7196 6.5670 -1.7030 34 1 4.3299 6.0519 -3.2937 35 1 7.9785 8.5776 -1.7166 36 1 5.1817 2.3766 -0.0851 37 1 3.8237 3.4131 0.4504 38 1 4.3330 0.9627 3.8041 39 1 4.4008 -0.2849 2.5368 40 1 5.4010 1.1809 2.3968 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336663263.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:44 Heat of formation + Delta-G solvation = -120.118507 kcal Electronic energy + Delta-G solvation = -19224.213749 eV Core-core repulsion = 16164.142108 eV Total energy + Delta-G solvation = -3060.071641 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.97874 -38.29375 -38.19920 -34.94406 -34.69220 -31.11816 -29.64766 -27.77736 -27.53474 -27.15656 -25.76595 -23.30923 -22.17019 -21.54417 -20.25981 -18.44112 -17.98818 -16.84300 -16.76028 -16.59493 -16.26078 -16.02423 -15.78701 -15.46058 -15.17891 -15.06112 -14.70582 -14.46485 -14.33064 -13.94867 -13.46358 -13.15126 -12.83262 -12.79617 -12.74028 -12.49418 -12.46939 -12.26982 -11.96834 -11.87542 -11.67857 -11.25726 -11.10760 -10.98265 -10.51397 -10.41941 -9.41997 -8.94776 -8.87777 -6.29085 1.40478 1.57240 1.57557 1.79054 2.32359 2.36166 2.56880 2.99513 3.09823 3.22277 3.36383 3.59562 3.86542 3.87330 4.06662 4.08429 4.16383 4.25391 4.29341 4.40724 4.46123 4.50096 4.52745 4.56191 4.60614 4.68945 4.69508 4.79700 4.81266 4.82331 4.86292 5.08137 5.15751 5.61794 5.73179 5.88010 6.06518 6.15289 6.15897 7.03742 8.49895 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.031410 B = 0.003098 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.225342 B = 9035.880920 C = 9595.227316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.392 6.392 3 C 0.073 3.927 4 H 0.077 0.923 5 C 0.026 3.974 6 N -0.525 5.525 7 C 0.065 3.935 8 C -0.089 4.089 9 C -0.067 4.067 10 S -0.243 6.243 11 C -0.606 4.606 12 H 0.066 0.934 13 C -0.018 4.018 14 N -0.912 5.912 15 Si 1.134 2.866 16 H -0.277 1.277 17 H -0.266 1.266 18 H -0.265 1.265 19 C 0.024 3.976 20 C 0.084 3.916 21 H 0.091 0.909 22 O -0.397 6.397 23 C 0.025 3.975 24 H 0.102 0.898 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.263 0.737 36 H 0.087 0.913 37 H 0.053 0.947 38 H 0.100 0.900 39 H 0.053 0.947 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.223 -19.338 5.070 24.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.310 6.310 3 C 0.013 3.987 4 H 0.095 0.905 5 C -0.102 4.102 6 N -0.251 5.251 7 C -0.065 4.065 8 C -0.128 4.128 9 C -0.217 4.217 10 S -0.015 6.015 11 C -0.754 4.754 12 H 0.084 0.916 13 C -0.222 4.222 14 N -0.547 5.547 15 Si 0.951 3.049 16 H -0.201 1.201 17 H -0.191 1.191 18 H -0.190 1.190 19 C -0.104 4.104 20 C 0.025 3.975 21 H 0.108 0.892 22 O -0.315 6.315 23 C -0.071 4.071 24 H 0.121 0.879 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.112 0.888 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.072 0.928 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.381 -18.490 5.052 22.818 hybrid contribution -1.933 -0.517 0.228 2.013 sum -14.313 -19.006 5.280 24.372 Atomic orbital electron populations 1.23007 0.79202 1.04159 1.00818 1.87883 1.21710 1.26467 1.94954 1.23355 0.94213 0.85716 0.95382 0.90474 1.23320 0.90606 0.99742 0.96520 1.63613 1.24616 1.15709 1.21206 1.22286 0.95819 0.86939 1.01417 1.21287 0.98661 0.91513 1.01297 1.23018 0.97764 0.97905 1.02996 1.84218 1.23531 1.12432 1.81349 1.23906 1.05091 0.97712 1.48651 0.91612 1.27791 0.92317 1.07277 0.94788 1.70914 1.20539 1.26894 1.36367 0.82746 0.76174 0.69436 0.76499 1.20148 1.19052 1.18993 1.23403 1.00909 0.97755 0.88311 1.23264 0.95137 0.98058 0.81024 0.89156 1.87849 1.50845 1.75213 1.17630 1.23009 0.89500 0.96744 0.97805 0.87934 0.93560 0.92869 0.90680 0.88753 0.93882 0.89348 0.91251 0.91721 0.91783 0.91385 0.92606 0.89435 0.92833 0.88174 0.92841 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.88 113.37 1.23 1.55 16 2 O -0.39 -7.83 10.43 -148.98 -1.55 -9.38 16 3 C 0.07 1.46 3.13 31.77 0.10 1.56 16 4 H 0.08 1.56 7.89 -2.38 -0.02 1.54 16 5 C 0.03 0.51 6.65 86.65 0.58 1.09 16 6 N -0.53 -12.37 5.31 -885.56 -4.71 -17.07 16 7 C 0.06 1.63 4.82 86.30 0.42 2.05 16 8 C -0.09 -2.83 4.88 30.60 0.15 -2.68 16 9 C -0.07 -2.69 5.67 71.98 0.41 -2.28 16 10 S -0.24 -12.95 20.46 -56.49 -1.16 -14.11 16 11 C -0.61 -35.60 9.50 67.95 0.65 -34.96 16 12 H 0.07 3.73 7.80 -2.91 -0.02 3.71 16 13 C -0.02 -1.07 5.49 84.86 0.47 -0.61 16 14 N -0.91 -57.45 13.67 21.65 0.30 -57.15 16 15 Si 1.13 49.86 29.92 68.60 2.05 51.91 16 16 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 17 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 18 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 19 C 0.02 0.57 5.04 86.77 0.44 1.01 16 20 C 0.08 1.82 3.26 31.98 0.10 1.93 16 21 H 0.09 1.90 7.83 -2.39 -0.02 1.88 16 22 O -0.40 -9.06 10.51 -148.98 -1.57 -10.62 16 23 C 0.03 0.42 10.85 113.37 1.23 1.65 16 24 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.05 0.58 8.11 -2.38 -0.02 0.56 16 26 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.07 1.29 7.49 -2.38 -0.02 1.27 16 28 H 0.09 1.81 8.06 -2.39 -0.02 1.79 16 29 H 0.04 1.04 7.96 -2.39 -0.02 1.02 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.06 2.11 6.48 -2.39 -0.02 2.09 16 33 H 0.06 2.53 8.14 -2.40 -0.02 2.51 16 34 H 0.07 2.67 8.14 -2.40 -0.02 2.65 16 35 H 0.26 16.98 7.12 -92.71 -0.66 16.32 16 36 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.05 1.39 7.02 -2.39 -0.02 1.37 16 38 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.05 0.77 8.12 -2.39 -0.02 0.75 16 40 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -70.23 338.94 0.23 -70.00 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 1.10 Total: 16.12 kcal Atomic # 6 Polarization: -35.46 SS G_CDS: 5.77 Total: -29.69 kcal Atomic # 7 Polarization: -69.82 SS G_CDS: -4.41 Total: -74.23 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -3.12 Total: -20.01 kcal Atomic # 14 Polarization: 49.86 SS G_CDS: 2.05 Total: 51.91 kcal Atomic # 16 Polarization: -12.95 SS G_CDS: -1.16 Total: -14.11 kcal Total: -70.23 0.23 -70.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336663263.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.118 kcal (2) G-P(sol) polarization free energy of solvation -70.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds