Wall clock time and date at job start Mon Mar 30 2020 01:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42898 * 114.00173 * 2 1 4 4 H 1.09003 * 110.36561 * 30.72895 * 3 2 1 5 5 C 1.54380 * 110.32619 * 268.54801 * 3 2 1 6 6 N 1.48566 * 104.59262 * 217.24863 * 5 3 2 7 7 C 1.46900 * 110.99544 * 159.03952 * 6 5 3 8 8 C 1.52998 * 109.46969 * 170.00138 * 7 6 5 9 9 C 1.53004 * 109.47390 * 180.02562 * 8 7 6 10 10 S 1.80995 * 109.47213 * 179.97438 * 9 8 7 11 11 C 1.76196 * 100.00001 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99802 * 0.02562 * 11 10 9 13 13 C 1.38796 * 120.00284 * 180.02562 * 11 10 9 14 14 N 1.31631 * 120.00289 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00426 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47106 * 59.99641 * 15 13 11 17 17 H 1.48496 * 109.47448 * 179.97438 * 15 13 11 18 18 H 1.48509 * 109.46712 * 299.99924 * 15 13 11 19 19 C 1.48561 * 104.22161 * 39.48414 * 6 5 3 20 20 C 1.54264 * 110.32466 * 152.90717 * 3 2 1 21 21 H 1.08995 * 110.32435 * 237.79362 * 20 3 2 22 22 O 1.42899 * 110.32291 * 0.02562 * 20 3 2 23 23 C 1.42903 * 113.99762 * 207.08944 * 22 20 3 24 24 H 1.08999 * 109.47543 * 299.99785 * 1 2 3 25 25 H 1.09008 * 109.47071 * 59.99717 * 1 2 3 26 26 H 1.09003 * 109.47464 * 179.97438 * 1 2 3 27 27 H 1.08999 * 110.41013 * 98.47300 * 5 3 2 28 28 H 1.08999 * 110.40872 * 336.02687 * 5 3 2 29 29 H 1.09004 * 109.47297 * 289.99585 * 7 6 5 30 30 H 1.09004 * 109.47326 * 50.00356 * 7 6 5 31 31 H 1.09005 * 109.47176 * 299.99860 * 8 7 6 32 32 H 1.09004 * 109.47568 * 59.99584 * 8 7 6 33 33 H 1.09005 * 109.46724 * 299.99987 * 9 8 7 34 34 H 1.08992 * 109.47176 * 59.99638 * 9 8 7 35 35 H 0.96995 * 120.00407 * 179.97438 * 14 13 11 36 36 H 1.08999 * 110.40911 * 79.29586 * 19 6 5 37 37 H 1.09000 * 110.40971 * 201.73791 * 19 6 5 38 38 H 1.08995 * 109.46797 * 299.99509 * 23 22 20 39 39 H 1.08997 * 109.47461 * 60.00101 * 23 22 20 40 40 H 1.09004 * 109.46647 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3620 2.0093 0.5222 5 6 2.2618 1.7804 -1.4472 6 7 3.5449 2.5262 -1.3786 7 6 4.1730 2.6159 -2.7035 8 6 5.3498 3.5919 -2.6449 9 6 6.0037 3.6859 -4.0250 10 16 7.3954 4.8410 -3.9558 11 6 7.9459 4.7573 -5.6275 12 1 7.4356 4.1179 -6.3327 13 6 9.0354 5.5129 -6.0381 14 7 9.6571 6.2925 -5.1788 15 14 9.6186 5.4247 -7.8105 16 1 8.5220 5.8555 -8.7145 17 1 10.7893 6.3201 -7.9916 18 1 10.0077 4.0286 -8.1346 19 6 4.3815 1.7281 -0.4458 20 6 3.4046 1.2711 0.6588 21 1 3.4409 1.9580 1.5043 22 8 3.7209 -0.0566 1.0822 23 6 4.6273 -0.1144 2.1855 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.4572 2.4377 -1.7769 28 1 2.3543 0.9256 -2.1171 29 1 4.5322 1.6313 -3.0028 30 1 3.4415 2.9720 -3.4291 31 1 4.9907 4.5766 -2.3456 32 1 6.0813 3.2360 -1.9194 33 1 6.3627 2.7013 -4.3247 34 1 5.2721 4.0421 -4.7502 35 1 10.4186 6.8203 -5.4656 36 1 4.8057 0.8652 -0.9591 37 1 5.1729 2.3461 -0.0215 38 1 5.5654 0.3676 1.9106 39 1 4.1912 0.4008 3.0414 40 1 4.8168 -1.1558 2.4458 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336663272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:47 Heat of formation + Delta-G solvation = -90.297235 kcal Electronic energy + Delta-G solvation = -19144.098783 eV Core-core repulsion = 16085.320289 eV Total energy + Delta-G solvation = -3058.778494 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.97438 -37.32406 -37.05285 -33.53569 -32.40944 -30.02153 -28.57170 -26.85773 -26.59295 -25.65484 -24.65743 -21.90871 -21.16127 -20.46289 -17.54944 -17.45058 -16.81171 -15.80398 -15.59937 -15.36212 -14.92690 -14.79599 -14.63765 -14.35264 -14.08191 -13.78550 -13.66443 -12.92142 -12.76539 -12.36737 -12.00106 -11.86543 -11.65985 -11.58149 -11.28832 -11.23439 -11.09871 -11.02689 -10.79186 -10.62112 -10.29238 -9.85968 -9.71220 -9.49452 -9.03453 -8.61190 -8.28393 -6.50680 -6.20881 -3.91029 3.18385 3.24458 3.25006 3.29102 3.58669 3.68053 4.12766 4.24802 4.30782 4.37950 4.81426 4.98569 5.03051 5.10832 5.12578 5.14827 5.18161 5.23947 5.27369 5.34268 5.42056 5.47229 5.50913 5.55596 5.63001 5.68512 5.75669 5.79205 5.89753 6.08354 6.33918 6.54374 6.68811 6.76007 6.81592 6.95937 7.16825 7.61993 8.38253 9.25202 10.87290 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.035126 B = 0.002931 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.943824 B = 9550.280588 C = 9997.996689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.087 3.913 4 H 0.079 0.921 5 C 0.009 3.991 6 N -0.502 5.502 7 C 0.050 3.950 8 C -0.090 4.090 9 C -0.113 4.113 10 S -0.132 6.132 11 C -0.517 4.517 12 H 0.071 0.929 13 C 0.071 3.929 14 N -0.870 5.870 15 Si 0.918 3.082 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.009 3.991 20 C 0.087 3.913 21 H 0.079 0.921 22 O -0.361 6.361 23 C 0.027 3.973 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.058 0.942 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.268 0.732 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.043 0.957 39 H 0.040 0.960 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.259 -11.175 12.982 23.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.278 6.278 3 C 0.028 3.972 4 H 0.097 0.903 5 C -0.120 4.120 6 N -0.228 5.228 7 C -0.079 4.079 8 C -0.129 4.129 9 C -0.262 4.262 10 S 0.096 5.904 11 C -0.665 4.665 12 H 0.090 0.910 13 C -0.138 4.138 14 N -0.506 5.506 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.200 1.200 19 C -0.120 4.120 20 C 0.028 3.972 21 H 0.097 0.903 22 O -0.278 6.278 23 C -0.070 4.070 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.735 -10.227 13.971 23.396 hybrid contribution 0.028 -1.073 -2.394 2.623 sum -15.707 -11.300 11.578 22.549 Atomic orbital electron populations 1.22824 0.81570 1.02736 0.99813 1.88089 1.18955 1.25963 1.94744 1.23017 0.93567 0.85378 0.95203 0.90311 1.23643 0.93992 0.97548 0.96791 1.65368 1.02908 1.44222 1.10296 1.22386 0.97151 0.99056 0.89341 1.21206 0.95444 0.99672 0.96581 1.23239 1.01709 1.02865 0.98431 1.84614 1.32997 1.55211 1.17543 1.22655 1.18192 1.31146 0.94488 0.91039 1.25012 0.95553 0.94603 0.98624 1.70012 1.20423 1.25663 1.34492 0.86227 0.78204 0.78212 0.82899 1.19941 1.20818 1.19952 1.23710 0.96625 0.97117 0.94504 1.23031 0.92849 0.85039 0.96321 0.90264 1.88073 1.64563 1.25160 1.50040 1.22837 0.92754 1.02726 0.88678 0.94138 0.94114 0.89655 0.89669 0.92349 0.94306 0.90657 0.90741 0.91778 0.92346 0.92125 0.92269 0.92144 0.89231 0.93854 0.94149 0.89642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.87 101.05 1.10 1.31 16 2 O -0.36 -4.13 9.48 -56.60 -0.54 -4.67 16 3 C 0.09 0.92 3.52 -25.35 -0.09 0.83 16 4 H 0.08 0.69 7.85 -51.93 -0.41 0.29 16 5 C 0.01 0.10 6.19 -2.18 -0.01 0.08 16 6 N -0.50 -6.41 5.34 -229.96 -1.23 -7.64 16 7 C 0.05 0.70 4.83 -3.83 -0.02 0.68 16 8 C -0.09 -1.52 5.33 -26.73 -0.14 -1.66 16 9 C -0.11 -2.33 5.67 37.16 0.21 -2.12 16 10 S -0.13 -3.50 21.44 -107.50 -2.30 -5.81 16 11 C -0.52 -15.01 9.50 30.94 0.29 -14.71 16 12 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 13 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 14 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 15 Si 0.92 21.73 29.55 -169.99 -5.02 16.70 16 16 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 C 0.01 0.11 5.65 -2.18 -0.01 0.10 16 20 C 0.09 0.95 3.52 -25.35 -0.09 0.86 16 21 H 0.08 0.75 7.85 -51.93 -0.41 0.34 16 22 O -0.36 -4.34 9.48 -56.60 -0.54 -4.88 16 23 C 0.03 0.23 10.87 101.05 1.10 1.33 16 24 H 0.04 0.26 8.10 -51.93 -0.42 -0.16 16 25 H 0.04 0.28 8.14 -51.92 -0.42 -0.15 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.70 7.94 -51.93 -0.41 0.29 16 29 H 0.04 0.55 7.77 -51.93 -0.40 0.15 16 30 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.09 7.47 -51.93 -0.39 0.70 16 33 H 0.06 1.19 8.14 -51.91 -0.42 0.77 16 34 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 35 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.06 0.81 7.69 -51.93 -0.40 0.41 16 37 H 0.09 1.07 7.85 -51.93 -0.41 0.66 16 38 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.04 0.30 8.10 -51.93 -0.42 -0.13 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 341.23 15.07 5.14 5.14 Total: -1.00 -32.59 341.23 -8.53 -41.12 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -7.01 Total: -3.12 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 2.24 Total: -11.35 kcal Atomic # 7 Polarization: -32.66 SS G_CDS: -0.49 Total: -33.15 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -1.07 Total: -9.54 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -2.30 Total: -5.81 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.59 -8.53 -41.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336663272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.178 kcal (2) G-P(sol) polarization free energy of solvation -32.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds