Wall clock time and date at job start Mon Mar 30 2020 01:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42898 * 114.00173 * 2 1 4 4 H 1.09003 * 110.36561 * 30.72895 * 3 2 1 5 5 C 1.54380 * 110.32619 * 268.54801 * 3 2 1 6 6 N 1.48566 * 104.59262 * 217.24863 * 5 3 2 7 7 C 1.46900 * 110.99544 * 159.03952 * 6 5 3 8 8 C 1.52998 * 109.46969 * 170.00138 * 7 6 5 9 9 C 1.53004 * 109.47390 * 180.02562 * 8 7 6 10 10 S 1.80995 * 109.47213 * 179.97438 * 9 8 7 11 11 C 1.76196 * 100.00001 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99802 * 0.02562 * 11 10 9 13 13 C 1.38796 * 120.00284 * 180.02562 * 11 10 9 14 14 N 1.31631 * 120.00289 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00426 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47106 * 59.99641 * 15 13 11 17 17 H 1.48496 * 109.47448 * 179.97438 * 15 13 11 18 18 H 1.48509 * 109.46712 * 299.99924 * 15 13 11 19 19 C 1.48561 * 104.22161 * 39.48414 * 6 5 3 20 20 C 1.54264 * 110.32466 * 152.90717 * 3 2 1 21 21 H 1.08995 * 110.32435 * 237.79362 * 20 3 2 22 22 O 1.42899 * 110.32291 * 0.02562 * 20 3 2 23 23 C 1.42903 * 113.99762 * 207.08944 * 22 20 3 24 24 H 1.08999 * 109.47543 * 299.99785 * 1 2 3 25 25 H 1.09008 * 109.47071 * 59.99717 * 1 2 3 26 26 H 1.09003 * 109.47464 * 179.97438 * 1 2 3 27 27 H 1.08999 * 110.41013 * 98.47300 * 5 3 2 28 28 H 1.08999 * 110.40872 * 336.02687 * 5 3 2 29 29 H 1.09004 * 109.47297 * 289.99585 * 7 6 5 30 30 H 1.09004 * 109.47326 * 50.00356 * 7 6 5 31 31 H 1.09005 * 109.47176 * 299.99860 * 8 7 6 32 32 H 1.09004 * 109.47568 * 59.99584 * 8 7 6 33 33 H 1.09005 * 109.46724 * 299.99987 * 9 8 7 34 34 H 1.08992 * 109.47176 * 59.99638 * 9 8 7 35 35 H 0.96995 * 120.00407 * 179.97438 * 14 13 11 36 36 H 1.08999 * 110.40911 * 79.29586 * 19 6 5 37 37 H 1.09000 * 110.40971 * 201.73791 * 19 6 5 38 38 H 1.08995 * 109.46797 * 299.99509 * 23 22 20 39 39 H 1.08997 * 109.47461 * 60.00101 * 23 22 20 40 40 H 1.09004 * 109.46647 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3620 2.0093 0.5222 5 6 2.2618 1.7804 -1.4472 6 7 3.5449 2.5262 -1.3786 7 6 4.1730 2.6159 -2.7035 8 6 5.3498 3.5919 -2.6449 9 6 6.0037 3.6859 -4.0250 10 16 7.3954 4.8410 -3.9558 11 6 7.9459 4.7573 -5.6275 12 1 7.4356 4.1179 -6.3327 13 6 9.0354 5.5129 -6.0381 14 7 9.6571 6.2925 -5.1788 15 14 9.6186 5.4247 -7.8105 16 1 8.5220 5.8555 -8.7145 17 1 10.7893 6.3201 -7.9916 18 1 10.0077 4.0286 -8.1346 19 6 4.3815 1.7281 -0.4458 20 6 3.4046 1.2711 0.6588 21 1 3.4409 1.9580 1.5043 22 8 3.7209 -0.0566 1.0822 23 6 4.6273 -0.1144 2.1855 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.4572 2.4377 -1.7769 28 1 2.3543 0.9256 -2.1171 29 1 4.5322 1.6313 -3.0028 30 1 3.4415 2.9720 -3.4291 31 1 4.9907 4.5766 -2.3456 32 1 6.0813 3.2360 -1.9194 33 1 6.3627 2.7013 -4.3247 34 1 5.2721 4.0421 -4.7502 35 1 10.4186 6.8203 -5.4656 36 1 4.8057 0.8652 -0.9591 37 1 5.1729 2.3461 -0.0215 38 1 5.5654 0.3676 1.9106 39 1 4.1912 0.4008 3.0414 40 1 4.8168 -1.1558 2.4458 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336663272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:47 Heat of formation + Delta-G solvation = -112.570966 kcal Electronic energy + Delta-G solvation = -19145.064644 eV Core-core repulsion = 16085.320289 eV Total energy + Delta-G solvation = -3059.744355 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.84039 -38.09726 -38.01325 -34.83298 -34.57736 -31.06119 -29.44423 -27.95252 -27.52927 -27.26402 -25.86665 -23.08488 -22.09437 -21.54911 -19.55496 -18.34494 -17.70728 -16.89848 -16.69430 -16.54418 -16.29196 -16.07343 -15.87845 -15.40960 -15.12206 -14.90312 -14.75773 -14.43406 -13.90450 -13.50814 -13.32508 -13.05347 -12.93549 -12.84865 -12.65375 -12.46273 -12.39783 -12.31105 -12.08025 -11.85736 -11.60996 -11.39827 -11.13735 -10.61588 -10.48322 -10.32801 -9.63215 -8.67280 -8.37541 -6.14097 1.30830 1.40600 1.47282 1.72832 2.27710 2.42853 2.96443 2.96488 3.14679 3.33507 3.45967 3.53759 3.97436 4.05058 4.16724 4.21237 4.31298 4.33437 4.39994 4.50783 4.52639 4.55330 4.57755 4.65654 4.69334 4.75329 4.79370 4.84651 4.87014 4.88482 4.91007 5.12679 5.28175 5.38962 5.65877 5.86287 6.10290 6.17547 6.42542 7.04368 8.71717 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.035126 B = 0.002931 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.943824 B = 9550.280588 C = 9997.996689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.385 6.385 3 C 0.088 3.912 4 H 0.099 0.901 5 C 0.011 3.989 6 N -0.506 5.506 7 C 0.060 3.940 8 C -0.077 4.077 9 C -0.089 4.089 10 S -0.196 6.196 11 C -0.540 4.540 12 H 0.072 0.928 13 C 0.015 3.985 14 N -0.908 5.908 15 Si 0.994 3.006 16 H -0.264 1.264 17 H -0.274 1.274 18 H -0.265 1.265 19 C 0.008 3.992 20 C 0.086 3.914 21 H 0.096 0.904 22 O -0.384 6.384 23 C 0.022 3.978 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.048 0.952 29 H 0.037 0.963 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.272 0.728 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.519 -11.705 12.737 24.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.303 6.303 3 C 0.029 3.971 4 H 0.117 0.883 5 C -0.117 4.117 6 N -0.232 5.232 7 C -0.069 4.069 8 C -0.116 4.116 9 C -0.238 4.238 10 S 0.033 5.967 11 C -0.688 4.688 12 H 0.091 0.909 13 C -0.190 4.190 14 N -0.544 5.544 15 Si 0.816 3.184 16 H -0.189 1.189 17 H -0.199 1.199 18 H -0.190 1.190 19 C -0.120 4.120 20 C 0.027 3.973 21 H 0.114 0.886 22 O -0.302 6.302 23 C -0.075 4.075 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.111 0.889 27 H 0.119 0.881 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.010 -10.763 13.742 24.373 hybrid contribution 0.355 -0.962 -2.237 2.460 sum -16.655 -11.725 11.505 23.393 Atomic orbital electron populations 1.23007 0.79856 1.03697 1.00889 1.88055 1.20947 1.26502 1.94845 1.23068 0.93686 0.85631 0.94705 0.88273 1.23693 0.93354 0.97296 0.97379 1.65322 1.03591 1.44863 1.09385 1.22191 0.96227 0.97964 0.90561 1.21069 0.96198 1.00347 0.94019 1.23162 0.99077 1.00688 1.00886 1.84622 1.36536 1.57970 1.17595 1.23016 1.18913 1.31603 0.95250 0.90943 1.26077 0.95425 0.93839 1.03645 1.70146 1.20946 1.26410 1.36885 0.85068 0.77969 0.78696 0.76694 1.18872 1.19890 1.18972 1.23711 0.97028 0.96406 0.94854 1.23101 0.92763 0.85083 0.96385 0.88614 1.88040 1.65222 1.25791 1.51148 1.22998 0.92421 1.03677 0.88362 0.92812 0.93220 0.88877 0.88053 0.93407 0.94483 0.89644 0.91162 0.92214 0.92265 0.91669 0.91925 0.93733 0.89374 0.93776 0.92650 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.87 113.37 1.23 1.52 16 2 O -0.39 -8.23 9.48 -128.55 -1.22 -9.45 16 3 C 0.09 1.68 3.52 31.49 0.11 1.79 16 4 H 0.10 1.47 7.85 -2.39 -0.02 1.45 16 5 C 0.01 0.22 6.19 86.45 0.54 0.76 16 6 N -0.51 -12.22 5.34 -881.47 -4.71 -16.93 16 7 C 0.06 1.62 4.83 86.30 0.42 2.04 16 8 C -0.08 -2.56 5.33 30.59 0.16 -2.40 16 9 C -0.09 -3.63 5.67 71.98 0.41 -3.22 16 10 S -0.20 -10.60 21.44 -56.49 -1.21 -11.81 16 11 C -0.54 -31.63 9.50 67.95 0.65 -30.99 16 12 H 0.07 4.08 7.80 -2.91 -0.02 4.05 16 13 C 0.02 0.87 5.49 84.86 0.47 1.33 16 14 N -0.91 -55.32 13.22 21.65 0.29 -55.03 16 15 Si 0.99 44.26 29.55 68.60 2.03 46.29 16 16 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 17 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 18 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 19 C 0.01 0.20 5.65 86.45 0.49 0.69 16 20 C 0.09 1.76 3.52 31.49 0.11 1.87 16 21 H 0.10 1.61 7.85 -2.39 -0.02 1.59 16 22 O -0.38 -8.86 9.48 -128.55 -1.22 -10.08 16 23 C 0.02 0.35 10.87 113.37 1.23 1.58 16 24 H 0.05 0.57 8.10 -2.39 -0.02 0.55 16 25 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 26 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.05 1.08 7.94 -2.39 -0.02 1.07 16 29 H 0.04 1.01 7.77 -2.39 -0.02 1.00 16 30 H 0.09 2.13 8.08 -2.38 -0.02 2.11 16 31 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 32 H 0.06 2.03 7.47 -2.39 -0.02 2.01 16 33 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.06 2.60 8.14 -2.40 -0.02 2.58 16 35 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.04 1.19 7.69 -2.39 -0.02 1.17 16 37 H 0.09 2.06 7.85 -2.39 -0.02 2.05 16 38 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.05 0.72 8.10 -2.39 -0.02 0.70 16 40 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -69.99 341.23 0.75 -69.24 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.98 Total: 12.80 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: 5.81 Total: -25.02 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -4.42 Total: -71.96 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -2.44 Total: -19.53 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: -10.60 SS G_CDS: -1.21 Total: -11.81 kcal Total: -69.99 0.75 -69.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336663272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.334 kcal (2) G-P(sol) polarization free energy of solvation -69.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds