Wall clock time and date at job start Mon Mar 30 2020 01:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42100 * 108.57996 * 2 1 4 4 O 1.42100 * 108.57483 * 228.97692 * 2 1 3 5 5 C 1.81399 * 101.92209 * 114.49179 * 2 1 3 6 6 H 1.09002 * 109.46890 * 64.99434 * 5 2 1 7 7 C 1.52998 * 109.46891 * 304.99736 * 5 2 1 8 8 C 1.53006 * 109.46907 * 179.97438 * 7 5 2 9 9 C 1.53000 * 109.46839 * 60.00324 * 8 7 5 10 10 C 1.53001 * 109.46935 * 299.99881 * 9 8 7 11 11 C 1.52995 * 109.47098 * 184.99597 * 5 2 1 12 12 H 1.09002 * 109.46925 * 60.00412 * 11 5 2 13 13 N 1.46892 * 109.47402 * 299.99968 * 11 5 2 14 14 C 1.46906 * 111.00016 * 154.99996 * 13 11 5 15 15 C 1.53006 * 109.47123 * 180.02562 * 14 13 11 16 16 C 1.50698 * 109.46881 * 179.97438 * 15 14 13 17 17 H 1.07992 * 120.00165 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99655 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00106 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99730 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47488 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46930 * 120.00384 * 20 18 16 23 23 H 1.48506 * 109.47231 * 240.00020 * 20 18 16 24 24 H 1.08998 * 109.46716 * 305.51407 * 1 2 3 25 25 H 1.09006 * 109.46801 * 65.50576 * 1 2 3 26 26 H 1.08993 * 109.47055 * 185.50649 * 1 2 3 27 27 H 1.08993 * 109.47460 * 300.00012 * 7 5 2 28 28 H 1.09003 * 109.47053 * 60.00201 * 7 5 2 29 29 H 1.09003 * 109.46758 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47078 * 299.99823 * 8 7 5 31 31 H 1.08993 * 109.47154 * 59.99977 * 9 8 7 32 32 H 1.09002 * 109.47048 * 179.97438 * 9 8 7 33 33 H 1.09003 * 109.46881 * 180.02562 * 10 9 8 34 34 H 1.09006 * 109.47129 * 299.99730 * 10 9 8 35 35 H 1.00900 * 111.00464 * 278.95480 * 13 11 5 36 36 H 1.09000 * 109.46882 * 299.99870 * 14 13 11 37 37 H 1.08997 * 109.47092 * 59.99984 * 14 13 11 38 38 H 1.08998 * 109.46506 * 299.99916 * 15 14 13 39 39 H 1.08999 * 109.46897 * 59.99679 * 15 14 13 40 40 H 0.97007 * 120.00235 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7358 1.6152 6 1 1.8388 -1.7679 1.6342 7 6 1.4847 0.0619 2.7146 8 6 1.8002 -0.5592 4.0769 9 6 3.3116 -0.5290 4.3133 10 6 4.0157 -1.3266 3.2137 11 6 3.7001 -0.7053 1.8512 12 1 4.0500 0.3269 1.8322 13 7 4.3762 -1.4711 0.7956 14 6 5.7592 -1.0100 0.6143 15 6 6.4290 -1.8289 -0.4912 16 6 7.8475 -1.3555 -0.6776 17 1 8.2328 -0.5514 -0.0683 18 6 8.6536 -1.9497 -1.6253 19 7 8.1844 -2.9292 -2.3669 20 14 10.4116 -1.3624 -1.8569 21 1 10.6933 -0.2564 -0.9069 22 1 11.3471 -2.4865 -1.5986 23 1 10.5924 -0.8779 -3.2490 24 1 -0.3633 0.5970 0.8365 25 1 -0.3633 0.4261 -0.9352 26 1 -0.3633 -1.0229 0.0986 27 1 1.8345 1.0939 2.6956 28 1 0.4079 0.0400 2.5464 29 1 1.2982 0.0089 4.8602 30 1 1.4499 -1.5912 4.0957 31 1 3.6617 0.5029 4.2945 32 1 3.5364 -0.9710 5.2840 33 1 5.0924 -1.3055 3.3824 34 1 3.6655 -2.3587 3.2326 35 1 4.3476 -2.4604 0.9918 36 1 5.7572 0.0436 0.3350 37 1 6.3099 -1.1379 1.5461 38 1 6.4308 -2.8826 -0.2123 39 1 5.8780 -1.7006 -1.4229 40 1 8.7514 -3.3470 -3.0339 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336669972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:00 Heat of formation + Delta-G solvation = -91.294084 kcal Electronic energy + Delta-G solvation = -20362.657290 eV Core-core repulsion = 17303.835569 eV Total energy + Delta-G solvation = -3058.821720 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.05400 -36.66217 -35.67001 -35.17454 -32.85776 -31.46134 -30.37733 -29.32747 -27.56022 -24.05167 -23.18390 -21.80224 -20.77342 -19.98893 -18.54239 -16.92494 -16.30143 -15.96273 -15.63394 -15.29337 -14.79147 -14.46458 -14.35632 -13.90298 -13.80296 -13.31561 -13.19687 -13.08150 -12.64914 -12.50895 -12.02920 -11.74311 -11.66728 -11.63492 -11.41605 -11.29922 -11.02539 -10.89164 -10.81323 -10.78963 -10.58195 -10.40396 -10.11041 -9.80839 -9.32432 -9.05132 -8.28446 -7.86881 -5.92031 -3.94386 0.17326 2.97363 3.36396 3.43490 3.47695 3.87416 4.00614 4.26398 4.45125 4.52041 4.64129 4.74229 4.84198 4.86259 4.98430 5.10012 5.13922 5.27620 5.32548 5.43794 5.44552 5.57647 5.61018 5.76248 5.87067 5.89106 5.94034 6.05963 6.20941 6.38051 6.42713 7.03045 7.42733 7.77287 7.85064 7.99020 8.17592 8.50528 9.13287 9.68789 11.19445 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.022464 B = 0.004834 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.134729 B = 5790.390856 C = 6592.951359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.675 4.675 2 S 2.432 3.568 3 O -0.943 6.943 4 O -0.902 6.902 5 C -0.558 4.558 6 H 0.134 0.866 7 C -0.111 4.111 8 C -0.110 4.110 9 C -0.119 4.119 10 C -0.139 4.139 11 C 0.101 3.899 12 H 0.091 0.909 13 N -0.690 5.690 14 C 0.066 3.934 15 C 0.023 3.977 16 C -0.520 4.520 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.892 5.892 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 H 0.123 0.877 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.345 0.655 36 H 0.061 0.939 37 H 0.020 0.980 38 H 0.014 0.986 39 H 0.031 0.969 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.243 4.295 13.216 22.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.822 4.822 2 S 2.612 3.388 3 O -0.940 6.940 4 O -0.899 6.899 5 C -0.667 4.667 6 H 0.152 0.848 7 C -0.150 4.150 8 C -0.149 4.149 9 C -0.157 4.157 10 C -0.179 4.179 11 C -0.011 4.011 12 H 0.110 0.890 13 N -0.321 5.321 14 C -0.062 4.062 15 C -0.014 4.014 16 C -0.559 4.559 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.531 5.531 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.141 0.859 25 H 0.143 0.857 26 H 0.143 0.857 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.163 0.837 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.033 0.967 39 H 0.049 0.951 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.876 4.864 11.851 21.992 hybrid contribution 0.751 -0.530 1.211 1.520 sum -17.125 4.334 13.062 21.969 Atomic orbital electron populations 1.30534 1.29563 1.10990 1.11086 1.07879 0.77006 0.76097 0.77862 1.93550 1.78695 1.35164 1.86599 1.93648 1.77247 1.66286 1.52752 1.30238 1.05033 1.11979 1.19473 0.84769 1.21493 0.99286 0.99773 0.94438 1.21448 0.96581 1.01051 0.95776 1.21515 0.94953 1.00855 0.98374 1.22202 1.01083 0.99777 0.94886 1.21264 0.88794 1.00104 0.90897 0.89048 1.60755 1.19883 1.08620 1.42809 1.22231 0.84470 1.00396 0.99099 1.19090 0.94373 0.94458 0.93481 1.21208 0.97071 1.18399 1.19233 0.92721 1.25000 0.98464 0.95087 0.95831 1.69994 1.36212 1.24258 1.22665 0.86543 0.84903 0.78566 0.77994 1.19799 1.21126 1.20977 0.85851 0.85718 0.85696 0.89896 0.90754 0.91606 0.91696 0.91663 0.91915 0.91038 0.91545 0.83675 0.92082 0.96164 0.96745 0.95096 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -5.29 10.01 101.05 1.01 -4.28 16 2 S 2.43 31.98 4.69 -107.50 -0.50 31.48 16 3 O -0.94 -15.63 18.06 -57.83 -1.04 -16.67 16 4 O -0.90 -16.40 17.26 -57.83 -1.00 -17.39 16 5 C -0.56 -5.97 2.32 -26.73 -0.06 -6.03 16 6 H 0.13 1.16 8.14 -51.92 -0.42 0.74 16 7 C -0.11 -0.89 4.91 -26.73 -0.13 -1.02 16 8 C -0.11 -0.83 5.92 -26.73 -0.16 -0.99 16 9 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 10 C -0.14 -1.61 5.17 -26.71 -0.14 -1.75 16 11 C 0.10 1.40 1.90 -67.70 -0.13 1.27 16 12 H 0.09 1.36 7.80 -51.93 -0.40 0.95 16 13 N -0.69 -12.36 5.10 -106.70 -0.54 -12.90 16 14 C 0.07 1.42 5.42 -3.82 -0.02 1.40 16 15 C 0.02 0.64 5.23 -27.88 -0.15 0.49 16 16 C -0.52 -15.23 9.11 -34.44 -0.31 -15.55 16 17 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.71 13.29 55.43 0.74 -26.97 16 20 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 21 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 24 H 0.12 0.67 6.77 -51.92 -0.35 0.32 16 25 H 0.12 0.93 8.14 -51.92 -0.42 0.51 16 26 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.38 6.39 -51.93 -0.33 0.05 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.91 7.46 -51.93 -0.39 0.52 16 34 H 0.07 0.72 8.13 -51.93 -0.42 0.29 16 35 H 0.34 5.80 8.47 -39.29 -0.33 5.47 16 36 H 0.06 1.36 8.06 -51.93 -0.42 0.94 16 37 H 0.02 0.41 7.44 -51.93 -0.39 0.03 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 328.63 15.07 4.95 4.95 Total: -1.00 -36.73 328.63 -9.57 -46.30 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.80 Total: 0.08 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: -0.34 Total: -26.09 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.19 Total: -39.87 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -2.04 Total: -34.07 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Atomic # 16 Polarization: 31.98 SS G_CDS: -0.50 Total: 31.48 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -36.73 -9.57 -46.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336669972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.998 kcal (2) G-P(sol) polarization free energy of solvation -36.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds