Wall clock time and date at job start Mon Mar 30 2020 01:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42100 * 108.57996 * 2 1 4 4 O 1.42100 * 108.57483 * 228.97692 * 2 1 3 5 5 C 1.81399 * 101.92209 * 114.49179 * 2 1 3 6 6 H 1.09002 * 109.46890 * 64.99434 * 5 2 1 7 7 C 1.52998 * 109.46891 * 304.99736 * 5 2 1 8 8 C 1.53006 * 109.46907 * 179.97438 * 7 5 2 9 9 C 1.53000 * 109.46839 * 60.00324 * 8 7 5 10 10 C 1.53001 * 109.46935 * 299.99881 * 9 8 7 11 11 C 1.52995 * 109.47098 * 184.99597 * 5 2 1 12 12 H 1.09002 * 109.46925 * 60.00412 * 11 5 2 13 13 N 1.46892 * 109.47402 * 299.99968 * 11 5 2 14 14 C 1.46906 * 111.00016 * 154.99996 * 13 11 5 15 15 C 1.53006 * 109.47123 * 180.02562 * 14 13 11 16 16 C 1.50698 * 109.46881 * 179.97438 * 15 14 13 17 17 H 1.07992 * 120.00165 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99655 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00106 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99730 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47488 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46930 * 120.00384 * 20 18 16 23 23 H 1.48506 * 109.47231 * 240.00020 * 20 18 16 24 24 H 1.08998 * 109.46716 * 305.51407 * 1 2 3 25 25 H 1.09006 * 109.46801 * 65.50576 * 1 2 3 26 26 H 1.08993 * 109.47055 * 185.50649 * 1 2 3 27 27 H 1.08993 * 109.47460 * 300.00012 * 7 5 2 28 28 H 1.09003 * 109.47053 * 60.00201 * 7 5 2 29 29 H 1.09003 * 109.46758 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47078 * 299.99823 * 8 7 5 31 31 H 1.08993 * 109.47154 * 59.99977 * 9 8 7 32 32 H 1.09002 * 109.47048 * 179.97438 * 9 8 7 33 33 H 1.09003 * 109.46881 * 180.02562 * 10 9 8 34 34 H 1.09006 * 109.47129 * 299.99730 * 10 9 8 35 35 H 1.00900 * 111.00464 * 278.95480 * 13 11 5 36 36 H 1.09000 * 109.46882 * 299.99870 * 14 13 11 37 37 H 1.08997 * 109.47092 * 59.99984 * 14 13 11 38 38 H 1.08998 * 109.46506 * 299.99916 * 15 14 13 39 39 H 1.08999 * 109.46897 * 59.99679 * 15 14 13 40 40 H 0.97007 * 120.00235 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7358 1.6152 6 1 1.8388 -1.7679 1.6342 7 6 1.4847 0.0619 2.7146 8 6 1.8002 -0.5592 4.0769 9 6 3.3116 -0.5290 4.3133 10 6 4.0157 -1.3266 3.2137 11 6 3.7001 -0.7053 1.8512 12 1 4.0500 0.3269 1.8322 13 7 4.3762 -1.4711 0.7956 14 6 5.7592 -1.0100 0.6143 15 6 6.4290 -1.8289 -0.4912 16 6 7.8475 -1.3555 -0.6776 17 1 8.2328 -0.5514 -0.0683 18 6 8.6536 -1.9497 -1.6253 19 7 8.1844 -2.9292 -2.3669 20 14 10.4116 -1.3624 -1.8569 21 1 10.6933 -0.2564 -0.9069 22 1 11.3471 -2.4865 -1.5986 23 1 10.5924 -0.8779 -3.2490 24 1 -0.3633 0.5970 0.8365 25 1 -0.3633 0.4261 -0.9352 26 1 -0.3633 -1.0229 0.0986 27 1 1.8345 1.0939 2.6956 28 1 0.4079 0.0400 2.5464 29 1 1.2982 0.0089 4.8602 30 1 1.4499 -1.5912 4.0957 31 1 3.6617 0.5029 4.2945 32 1 3.5364 -0.9710 5.2840 33 1 5.0924 -1.3055 3.3824 34 1 3.6655 -2.3587 3.2326 35 1 4.3476 -2.4604 0.9918 36 1 5.7572 0.0436 0.3350 37 1 6.3099 -1.1379 1.5461 38 1 6.4308 -2.8826 -0.2123 39 1 5.8780 -1.7006 -1.4229 40 1 8.7514 -3.3470 -3.0339 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336669972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:59 Heat of formation + Delta-G solvation = -120.188849 kcal Electronic energy + Delta-G solvation = -20363.910261 eV Core-core repulsion = 17303.835569 eV Total energy + Delta-G solvation = -3060.074691 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.03528 -37.80963 -36.84125 -36.62306 -34.88127 -32.25758 -32.01386 -30.04483 -29.09670 -25.98953 -23.99102 -22.92141 -22.54660 -20.94289 -19.58249 -18.55723 -17.88050 -17.03265 -16.71488 -16.55882 -16.30025 -16.03788 -15.49782 -14.93860 -14.65437 -14.50067 -14.33727 -13.97017 -13.90280 -13.71880 -13.41872 -13.18140 -12.89456 -12.88118 -12.80741 -12.56539 -12.41599 -12.25389 -12.18531 -11.97944 -11.70758 -11.58862 -11.47826 -11.35663 -11.06539 -10.83998 -10.58010 -9.30466 -8.21158 -6.33463 -0.77464 1.37970 1.39989 1.53103 2.06343 2.39246 2.92885 3.04463 3.11750 3.31156 3.60803 3.79869 3.93498 4.13190 4.13351 4.16997 4.31414 4.37034 4.40917 4.44548 4.50419 4.55934 4.78618 4.91210 4.92037 5.00474 5.03008 5.12293 5.21462 5.25714 5.30688 5.42411 5.50121 5.65413 5.76284 6.07765 6.21216 6.48798 6.83759 7.35622 8.91597 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.022464 B = 0.004834 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.134729 B = 5790.390856 C = 6592.951359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.400 3.600 3 O -0.996 6.996 4 O -0.974 6.974 5 C -0.539 4.539 6 H 0.162 0.838 7 C -0.115 4.115 8 C -0.107 4.107 9 C -0.119 4.119 10 C -0.135 4.135 11 C 0.094 3.906 12 H 0.073 0.927 13 N -0.701 5.701 14 C 0.085 3.915 15 C 0.031 3.969 16 C -0.546 4.546 17 H 0.060 0.940 18 C -0.001 4.001 19 N -0.932 5.932 20 Si 0.971 3.029 21 H -0.262 1.262 22 H -0.273 1.273 23 H -0.278 1.278 24 H 0.160 0.840 25 H 0.132 0.868 26 H 0.156 0.844 27 H 0.075 0.925 28 H 0.117 0.883 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.349 0.651 36 H 0.046 0.954 37 H 0.032 0.968 38 H -0.003 1.003 39 H -0.013 1.013 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.151 4.544 15.618 25.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.590 3.410 3 O -0.993 6.993 4 O -0.971 6.971 5 C -0.651 4.651 6 H 0.179 0.821 7 C -0.154 4.154 8 C -0.145 4.145 9 C -0.157 4.157 10 C -0.175 4.175 11 C -0.017 4.017 12 H 0.091 0.909 13 N -0.332 5.332 14 C -0.044 4.044 15 C -0.006 4.006 16 C -0.585 4.585 17 H 0.079 0.921 18 C -0.199 4.199 19 N -0.572 5.572 20 Si 0.795 3.205 21 H -0.186 1.186 22 H -0.199 1.199 23 H -0.204 1.204 24 H 0.178 0.822 25 H 0.151 0.849 26 H 0.174 0.826 27 H 0.094 0.906 28 H 0.135 0.865 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.168 0.832 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.015 0.985 39 H 0.006 0.994 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.750 5.133 14.247 24.887 hybrid contribution 1.215 -0.626 0.505 1.457 sum -18.535 4.506 14.752 24.114 Atomic orbital electron populations 1.30201 1.21915 1.14039 1.13288 1.08145 0.80029 0.74598 0.78276 1.93482 1.81334 1.37052 1.87417 1.93576 1.80443 1.67169 1.55932 1.30052 1.02759 1.13878 1.18421 0.82064 1.21692 1.01403 0.98799 0.93460 1.21480 0.94947 1.02302 0.95806 1.21545 0.96391 1.00004 0.97788 1.22141 1.00408 1.00711 0.94221 1.21380 0.90697 0.98562 0.91052 0.90919 1.60619 1.17586 1.09294 1.45739 1.21775 0.86721 0.98412 0.97462 1.18918 0.94056 0.94292 0.93381 1.21635 0.98174 1.18816 1.19834 0.92150 1.26028 1.03675 0.94989 0.95194 1.70136 1.38291 1.25487 1.23273 0.85322 0.78526 0.78524 0.78166 1.18553 1.19883 1.20411 0.82206 0.84927 0.82552 0.90586 0.86490 0.89293 0.90290 0.92333 0.90563 0.92958 0.90369 0.83186 0.93496 0.95033 0.98512 0.99414 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -7.54 10.01 113.37 1.14 -6.40 16 2 S 2.40 63.22 4.69 -56.49 -0.27 62.95 16 3 O -1.00 -34.49 18.06 -127.37 -2.30 -36.79 16 4 O -0.97 -37.55 17.26 -127.37 -2.20 -39.75 16 5 C -0.54 -10.59 2.32 30.59 0.07 -10.52 16 6 H 0.16 2.29 8.14 -2.39 -0.02 2.27 16 7 C -0.12 -1.39 4.91 30.60 0.15 -1.24 16 8 C -0.11 -1.13 5.92 30.60 0.18 -0.95 16 9 C -0.12 -1.89 5.92 30.59 0.18 -1.70 16 10 C -0.13 -2.98 5.17 30.61 0.16 -2.82 16 11 C 0.09 2.62 1.90 44.93 0.09 2.70 16 12 H 0.07 2.28 7.80 -2.39 -0.02 2.26 16 13 N -0.70 -26.43 5.10 -491.50 -2.51 -28.93 16 14 C 0.08 3.91 5.42 86.30 0.47 4.38 16 15 C 0.03 1.79 5.23 29.85 0.16 1.95 16 16 C -0.55 -33.19 9.11 25.60 0.23 -32.95 16 17 H 0.06 3.51 7.74 -2.91 -0.02 3.48 16 18 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 19 N -0.93 -59.77 13.29 21.45 0.28 -59.48 16 20 Si 0.97 46.36 29.54 68.60 2.03 48.39 16 21 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 24 H 0.16 0.79 6.77 -2.39 -0.02 0.78 16 25 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.16 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.12 0.46 6.39 -2.39 -0.02 0.45 16 29 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 1.34 7.46 -2.39 -0.02 1.32 16 34 H 0.08 1.54 8.13 -2.38 -0.02 1.52 16 35 H 0.35 12.30 8.47 -89.69 -0.76 11.54 16 36 H 0.05 2.25 8.06 -2.39 -0.02 2.23 16 37 H 0.03 1.36 7.44 -2.39 -0.02 1.34 16 38 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 40 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 Total: -1.00 -86.72 328.63 -1.43 -88.15 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 0.25 Total: 12.63 kcal Atomic # 6 Polarization: -50.44 SS G_CDS: 3.28 Total: -47.16 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -2.22 Total: -88.42 kcal Atomic # 8 Polarization: -72.04 SS G_CDS: -4.50 Total: -76.54 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Atomic # 16 Polarization: 63.22 SS G_CDS: -0.27 Total: 62.95 kcal Total: -86.72 -1.43 -88.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336669972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.042 kcal (2) G-P(sol) polarization free energy of solvation -86.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds