Wall clock time and date at job start Mon Mar 30 2020 01:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42097 * 108.57958 * 2 1 4 4 O 1.42103 * 108.57680 * 228.97166 * 2 1 3 5 5 C 1.81396 * 101.92056 * 114.48941 * 2 1 3 6 6 H 1.09002 * 109.47587 * 299.99894 * 5 2 1 7 7 C 1.53006 * 109.47573 * 59.99802 * 5 2 1 8 8 C 1.52997 * 109.47445 * 179.97438 * 7 5 2 9 9 C 1.53002 * 109.47092 * 300.00075 * 8 7 5 10 10 C 1.53001 * 109.46963 * 60.00194 * 9 8 7 11 11 C 1.53000 * 109.46886 * 299.99499 * 10 9 8 12 12 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 13 13 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 14 14 C 1.46903 * 110.99880 * 85.00797 * 13 11 10 15 15 C 1.52999 * 109.47276 * 180.02562 * 14 13 11 16 16 C 1.50696 * 109.47268 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99739 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00032 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00523 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00023 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47259 * 90.00013 * 20 18 16 22 22 H 1.48507 * 109.47211 * 209.99775 * 20 18 16 23 23 H 1.48502 * 109.47402 * 329.99841 * 20 18 16 24 24 H 1.09007 * 109.47052 * 305.51273 * 1 2 3 25 25 H 1.08998 * 109.47023 * 65.51078 * 1 2 3 26 26 H 1.08996 * 109.47290 * 185.51675 * 1 2 3 27 27 H 1.09001 * 109.46726 * 300.00076 * 7 5 2 28 28 H 1.09002 * 109.46589 * 59.99481 * 7 5 2 29 29 H 1.09002 * 109.47045 * 59.99942 * 8 7 5 30 30 H 1.09000 * 109.47140 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.46497 * 180.02562 * 9 8 7 32 32 H 1.09002 * 109.47067 * 299.99853 * 9 8 7 33 33 H 1.09001 * 109.46652 * 179.97438 * 10 9 8 34 34 H 1.08992 * 109.47514 * 59.99933 * 10 9 8 35 35 H 1.00892 * 111.00435 * 321.04633 * 13 11 10 36 36 H 1.09003 * 109.46525 * 299.99167 * 14 13 11 37 37 H 1.08991 * 109.47692 * 59.99249 * 14 13 11 38 38 H 1.09003 * 109.46846 * 299.99603 * 15 14 13 39 39 H 1.09006 * 109.47089 * 59.99482 * 15 14 13 40 40 H 0.96994 * 120.00700 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1887 -0.7357 1.6152 6 1 1.7610 -0.1172 2.4043 7 6 1.5883 -2.1412 1.6872 8 6 1.9049 -2.7620 3.0492 9 6 3.4218 -2.8454 3.2315 10 6 4.0221 -1.4399 3.1597 11 6 3.7055 -0.8192 1.7975 12 1 4.1329 -1.4377 1.0082 13 7 4.2825 0.5300 1.7283 14 6 5.6892 0.4801 1.3080 15 6 6.2544 1.9006 1.2483 16 6 7.6976 1.8494 0.8178 17 1 8.1651 0.8986 0.6081 18 6 8.4212 3.0162 0.6915 19 7 9.6809 2.9715 0.3163 20 14 7.6127 4.6605 1.0549 21 1 7.7949 4.9953 2.4902 22 1 8.2381 5.7154 0.2174 23 1 6.1625 4.5782 0.7461 24 1 -0.3633 0.5970 0.8366 25 1 -0.3633 0.4260 -0.9352 26 1 -0.3634 -1.0229 0.0988 27 1 0.5078 -2.0818 1.5568 28 1 2.0160 -2.7597 0.8981 29 1 1.4776 -2.1435 3.8385 30 1 1.4768 -3.7631 3.1006 31 1 3.6472 -3.2881 4.2017 32 1 3.8491 -3.4639 2.4422 33 1 5.1026 -1.4993 3.2900 34 1 3.5948 -0.8215 3.9489 35 1 4.1853 1.0105 2.6102 36 1 6.2618 -0.1085 2.0248 37 1 5.7579 0.0196 0.3225 38 1 5.6818 2.4896 0.5318 39 1 6.1857 2.3607 2.2342 40 1 10.1900 3.7923 0.2278 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336669983.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:06 Heat of formation + Delta-G solvation = -87.380721 kcal Electronic energy + Delta-G solvation = -20428.549241 eV Core-core repulsion = 17369.897217 eV Total energy + Delta-G solvation = -3058.652024 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.12040 -36.74184 -35.74046 -35.28348 -32.81060 -31.48611 -30.68299 -29.41510 -27.92914 -24.04594 -23.23139 -21.81302 -20.70264 -19.96193 -18.61113 -16.96919 -16.71537 -16.06928 -15.69891 -15.39081 -14.86374 -14.52334 -14.11497 -13.97219 -13.86593 -13.37804 -13.23309 -13.18561 -12.76636 -12.54951 -12.41472 -11.80804 -11.74205 -11.70574 -11.50823 -11.39418 -11.25749 -10.96038 -10.86348 -10.85130 -10.60755 -10.15653 -9.90453 -9.79242 -9.63614 -9.14754 -8.45895 -7.97863 -5.97143 -3.95049 0.10662 2.90248 3.38848 3.46647 3.56600 3.79737 3.93919 4.19839 4.40034 4.54676 4.58139 4.68380 4.76824 4.81230 4.90922 5.04941 5.09306 5.22642 5.26160 5.37921 5.39986 5.53131 5.56173 5.71088 5.81974 5.84193 5.90406 6.00355 6.15833 6.22803 6.31150 6.82787 7.14350 7.43278 7.62778 7.77449 7.92558 8.60118 9.06866 9.65732 11.16171 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.021362 B = 0.005287 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.415483 B = 5294.321541 C = 6099.140486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.673 4.673 2 S 2.430 3.570 3 O -0.901 6.901 4 O -0.943 6.943 5 C -0.558 4.558 6 H 0.134 0.866 7 C -0.110 4.110 8 C -0.110 4.110 9 C -0.119 4.119 10 C -0.139 4.139 11 C 0.102 3.898 12 H 0.092 0.908 13 N -0.691 5.691 14 C 0.074 3.926 15 C -0.012 4.012 16 C -0.520 4.520 17 H 0.071 0.929 18 C 0.067 3.933 19 N -0.905 5.905 20 Si 0.878 3.122 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.260 1.260 24 H 0.124 0.876 25 H 0.124 0.876 26 H 0.123 0.877 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.343 0.657 36 H 0.026 0.974 37 H 0.066 0.934 38 H 0.031 0.969 39 H 0.009 0.991 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.855 -11.412 6.139 25.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.820 4.820 2 S 2.609 3.391 3 O -0.898 6.898 4 O -0.940 6.940 5 C -0.667 4.667 6 H 0.152 0.848 7 C -0.149 4.149 8 C -0.149 4.149 9 C -0.157 4.157 10 C -0.180 4.180 11 C -0.010 4.010 12 H 0.110 0.890 13 N -0.321 5.321 14 C -0.054 4.054 15 C -0.049 4.049 16 C -0.558 4.558 17 H 0.089 0.911 18 C -0.134 4.134 19 N -0.545 5.545 20 Si 0.706 3.294 21 H -0.205 1.205 22 H -0.215 1.215 23 H -0.184 1.184 24 H 0.143 0.857 25 H 0.143 0.857 26 H 0.141 0.859 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.162 0.838 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.027 0.973 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.373 -10.834 4.768 24.432 hybrid contribution -0.487 0.352 1.695 1.798 sum -21.860 -10.481 6.462 25.090 Atomic orbital electron populations 1.30510 1.29420 1.10814 1.11295 1.07932 0.77140 0.76402 0.77579 1.93648 1.77235 1.33281 1.85636 1.93558 1.78740 1.67705 1.54030 1.30235 1.05343 1.07548 1.23602 0.84840 1.21468 1.00050 0.93033 1.00358 1.21448 0.96598 1.00569 0.96245 1.21516 0.95209 0.97038 1.01962 1.22191 1.01561 0.96709 0.97500 1.21248 0.89204 0.92091 0.98491 0.88983 1.60763 1.20921 1.13888 1.36556 1.22017 0.83846 1.00338 0.99171 1.19565 0.96495 0.92062 0.96826 1.21070 0.94024 0.94927 1.45798 0.91121 1.24986 0.94647 0.99180 0.94550 1.69914 1.08314 1.28067 1.48168 0.86784 0.80796 0.83650 0.78220 1.20491 1.21462 1.18379 0.85706 0.85703 0.85865 0.90836 0.89736 0.91741 0.91546 0.91847 0.91575 0.90923 0.91563 0.83849 0.95558 0.91503 0.95033 0.97257 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -4.94 10.17 101.05 1.03 -3.91 16 2 S 2.43 30.17 4.76 -107.50 -0.51 29.66 16 3 O -0.90 -15.53 16.99 -57.83 -0.98 -16.51 16 4 O -0.94 -14.96 17.91 -57.83 -1.04 -15.99 16 5 C -0.56 -5.58 2.28 -26.73 -0.06 -5.64 16 6 H 0.13 1.03 8.14 -51.92 -0.42 0.61 16 7 C -0.11 -0.84 4.95 -26.73 -0.13 -0.98 16 8 C -0.11 -0.79 5.92 -26.73 -0.16 -0.95 16 9 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 10 C -0.14 -1.53 5.17 -26.73 -0.14 -1.67 16 11 C 0.10 1.33 1.91 -67.71 -0.13 1.20 16 12 H 0.09 1.31 7.80 -51.93 -0.40 0.90 16 13 N -0.69 -11.60 4.90 -106.72 -0.52 -12.12 16 14 C 0.07 1.53 5.42 -3.82 -0.02 1.51 16 15 C -0.01 -0.29 4.30 -27.89 -0.12 -0.41 16 16 C -0.52 -15.34 9.66 -34.44 -0.33 -15.68 16 17 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 18 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 19 N -0.91 -28.70 13.96 55.43 0.77 -27.93 16 20 Si 0.88 22.67 27.47 -169.99 -4.67 18.00 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 24 H 0.12 0.67 8.14 -51.92 -0.42 0.25 16 25 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.12 0.62 6.87 -51.93 -0.36 0.26 16 27 H 0.07 0.35 6.56 -51.93 -0.34 0.01 16 28 H 0.08 0.69 8.06 -51.93 -0.42 0.28 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.89 7.45 -51.93 -0.39 0.50 16 34 H 0.07 0.67 8.13 -51.93 -0.42 0.24 16 35 H 0.34 5.26 8.47 -39.30 -0.33 4.93 16 36 H 0.03 0.52 7.44 -51.93 -0.39 0.13 16 37 H 0.07 1.45 8.05 -51.93 -0.42 1.03 16 38 H 0.03 0.84 7.20 -51.93 -0.37 0.46 16 39 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 40 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 324.81 15.07 4.89 4.89 Total: -1.00 -37.07 324.81 -9.15 -46.22 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.78 Total: -0.42 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: -0.32 Total: -25.80 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.25 Total: -40.05 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -2.02 Total: -32.51 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.67 Total: 18.00 kcal Atomic # 16 Polarization: 30.17 SS G_CDS: -0.51 Total: 29.66 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -37.07 -9.15 -46.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336669983.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.162 kcal (2) G-P(sol) polarization free energy of solvation -37.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds