Wall clock time and date at job start Mon Mar 30 2020 01:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42097 * 108.57958 * 2 1 4 4 O 1.42103 * 108.57680 * 228.97166 * 2 1 3 5 5 C 1.81396 * 101.92056 * 114.48941 * 2 1 3 6 6 H 1.09002 * 109.47587 * 299.99894 * 5 2 1 7 7 C 1.53006 * 109.47573 * 59.99802 * 5 2 1 8 8 C 1.52997 * 109.47445 * 179.97438 * 7 5 2 9 9 C 1.53002 * 109.47092 * 300.00075 * 8 7 5 10 10 C 1.53001 * 109.46963 * 60.00194 * 9 8 7 11 11 C 1.53000 * 109.46886 * 299.99499 * 10 9 8 12 12 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 13 13 N 1.46901 * 109.46769 * 180.02562 * 11 10 9 14 14 C 1.46903 * 110.99880 * 85.00797 * 13 11 10 15 15 C 1.52999 * 109.47276 * 180.02562 * 14 13 11 16 16 C 1.50696 * 109.47268 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99739 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00032 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00523 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00023 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47259 * 90.00013 * 20 18 16 22 22 H 1.48507 * 109.47211 * 209.99775 * 20 18 16 23 23 H 1.48502 * 109.47402 * 329.99841 * 20 18 16 24 24 H 1.09007 * 109.47052 * 305.51273 * 1 2 3 25 25 H 1.08998 * 109.47023 * 65.51078 * 1 2 3 26 26 H 1.08996 * 109.47290 * 185.51675 * 1 2 3 27 27 H 1.09001 * 109.46726 * 300.00076 * 7 5 2 28 28 H 1.09002 * 109.46589 * 59.99481 * 7 5 2 29 29 H 1.09002 * 109.47045 * 59.99942 * 8 7 5 30 30 H 1.09000 * 109.47140 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.46497 * 180.02562 * 9 8 7 32 32 H 1.09002 * 109.47067 * 299.99853 * 9 8 7 33 33 H 1.09001 * 109.46652 * 179.97438 * 10 9 8 34 34 H 1.08992 * 109.47514 * 59.99933 * 10 9 8 35 35 H 1.00892 * 111.00435 * 321.04633 * 13 11 10 36 36 H 1.09003 * 109.46525 * 299.99167 * 14 13 11 37 37 H 1.08991 * 109.47692 * 59.99249 * 14 13 11 38 38 H 1.09003 * 109.46846 * 299.99603 * 15 14 13 39 39 H 1.09006 * 109.47089 * 59.99482 * 15 14 13 40 40 H 0.96994 * 120.00700 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1887 -0.7357 1.6152 6 1 1.7610 -0.1172 2.4043 7 6 1.5883 -2.1412 1.6872 8 6 1.9049 -2.7620 3.0492 9 6 3.4218 -2.8454 3.2315 10 6 4.0221 -1.4399 3.1597 11 6 3.7055 -0.8192 1.7975 12 1 4.1329 -1.4377 1.0082 13 7 4.2825 0.5300 1.7283 14 6 5.6892 0.4801 1.3080 15 6 6.2544 1.9006 1.2483 16 6 7.6976 1.8494 0.8178 17 1 8.1651 0.8986 0.6081 18 6 8.4212 3.0162 0.6915 19 7 9.6809 2.9715 0.3163 20 14 7.6127 4.6605 1.0549 21 1 7.7949 4.9953 2.4902 22 1 8.2381 5.7154 0.2174 23 1 6.1625 4.5782 0.7461 24 1 -0.3633 0.5970 0.8366 25 1 -0.3633 0.4260 -0.9352 26 1 -0.3634 -1.0229 0.0988 27 1 0.5078 -2.0818 1.5568 28 1 2.0160 -2.7597 0.8981 29 1 1.4776 -2.1435 3.8385 30 1 1.4768 -3.7631 3.1006 31 1 3.6472 -3.2881 4.2017 32 1 3.8491 -3.4639 2.4422 33 1 5.1026 -1.4993 3.2900 34 1 3.5948 -0.8215 3.9489 35 1 4.1853 1.0105 2.6102 36 1 6.2618 -0.1085 2.0248 37 1 5.7579 0.0196 0.3225 38 1 5.6818 2.4896 0.5318 39 1 6.1857 2.3607 2.2342 40 1 10.1900 3.7923 0.2278 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336669983.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:06 Heat of formation + Delta-G solvation = -116.897356 kcal Electronic energy + Delta-G solvation = -20429.829179 eV Core-core repulsion = 17369.897217 eV Total energy + Delta-G solvation = -3059.931962 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.04696 -37.81065 -36.84201 -36.63890 -34.85121 -32.38012 -32.21484 -30.06598 -29.33636 -25.85351 -23.99372 -22.83769 -22.43165 -20.93623 -19.57700 -18.98550 -17.88572 -17.04330 -16.69680 -16.49736 -16.29428 -15.92359 -15.56336 -14.99277 -14.81659 -14.60920 -14.32465 -14.04305 -13.94833 -13.78577 -13.48500 -13.35118 -12.94168 -12.86756 -12.79400 -12.57494 -12.24019 -12.16137 -11.96528 -11.87732 -11.79312 -11.69630 -11.49903 -11.44123 -11.15092 -10.84456 -10.77291 -9.31773 -8.31887 -6.36241 -0.76887 1.33167 1.37656 1.52419 2.06452 2.35935 2.91498 3.02259 3.03582 3.28997 3.61297 3.79301 3.92249 4.13293 4.13542 4.16329 4.31220 4.36602 4.39835 4.40623 4.46944 4.52909 4.78153 4.89346 4.90727 4.94247 5.00768 5.11431 5.20755 5.23047 5.27418 5.32648 5.45228 5.50722 5.63004 6.02572 6.22727 6.49824 6.71491 7.28631 8.84874 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.021362 B = 0.005287 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.415483 B = 5294.321541 C = 6099.140486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.400 3.600 3 O -0.967 6.967 4 O -0.997 6.997 5 C -0.539 4.539 6 H 0.167 0.833 7 C -0.115 4.115 8 C -0.106 4.106 9 C -0.121 4.121 10 C -0.135 4.135 11 C 0.094 3.906 12 H 0.068 0.932 13 N -0.696 5.696 14 C 0.088 3.912 15 C -0.005 4.005 16 C -0.535 4.535 17 H 0.032 0.968 18 C 0.008 3.992 19 N -0.950 5.950 20 Si 0.951 3.049 21 H -0.259 1.259 22 H -0.281 1.281 23 H -0.255 1.255 24 H 0.156 0.844 25 H 0.131 0.869 26 H 0.157 0.843 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.353 0.647 36 H 0.029 0.971 37 H 0.044 0.956 38 H 0.016 0.984 39 H 0.024 0.976 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.896 -11.485 8.445 29.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.589 3.411 3 O -0.964 6.964 4 O -0.995 6.995 5 C -0.651 4.651 6 H 0.185 0.815 7 C -0.154 4.154 8 C -0.145 4.145 9 C -0.159 4.159 10 C -0.175 4.175 11 C -0.017 4.017 12 H 0.086 0.914 13 N -0.327 5.327 14 C -0.041 4.041 15 C -0.043 4.043 16 C -0.574 4.574 17 H 0.050 0.950 18 C -0.189 4.189 19 N -0.590 5.590 20 Si 0.774 3.226 21 H -0.184 1.184 22 H -0.207 1.207 23 H -0.179 1.179 24 H 0.175 0.825 25 H 0.150 0.850 26 H 0.176 0.824 27 H 0.134 0.866 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.172 0.828 36 H 0.047 0.953 37 H 0.062 0.938 38 H 0.034 0.966 39 H 0.043 0.957 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -25.378 -10.917 7.061 28.514 hybrid contribution 0.740 0.244 0.972 1.246 sum -24.638 -10.673 8.033 28.026 Atomic orbital electron populations 1.30191 1.22087 1.13926 1.13245 1.08160 0.80020 0.74824 0.78086 1.93576 1.80260 1.35876 1.86678 1.93492 1.81328 1.68083 1.56553 1.30051 1.02878 1.09865 1.22266 0.81545 1.21653 1.02370 0.90773 1.00555 1.21472 0.94812 1.02066 0.96121 1.21551 0.96885 0.95140 1.02307 1.22134 1.00624 0.98482 0.96259 1.21352 0.91357 0.89787 0.99246 0.91363 1.60626 1.17960 1.16730 1.37395 1.21613 0.86577 0.97486 0.98395 1.19434 0.93604 0.94586 0.96679 1.21400 0.96338 0.93669 1.45952 0.94955 1.25968 0.95171 1.03596 0.94209 1.70056 1.10019 1.29528 1.49416 0.85644 0.79680 0.78176 0.79106 1.18351 1.20706 1.17853 0.82531 0.85008 0.82444 0.86603 0.90964 0.90005 0.89563 0.90606 0.92691 0.93084 0.89844 0.82756 0.95263 0.93773 0.96586 0.95739 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -6.54 10.17 113.37 1.15 -5.39 16 2 S 2.40 57.86 4.76 -56.49 -0.27 57.59 16 3 O -0.97 -34.01 16.99 -127.37 -2.16 -36.17 16 4 O -1.00 -32.82 17.91 -127.37 -2.28 -35.10 16 5 C -0.54 -9.47 2.28 30.60 0.07 -9.40 16 6 H 0.17 1.83 8.14 -2.39 -0.02 1.81 16 7 C -0.11 -1.31 4.95 30.60 0.15 -1.16 16 8 C -0.11 -1.06 5.92 30.59 0.18 -0.87 16 9 C -0.12 -1.85 5.92 30.60 0.18 -1.67 16 10 C -0.13 -2.78 5.17 30.59 0.16 -2.63 16 11 C 0.09 2.43 1.91 44.92 0.09 2.51 16 12 H 0.07 2.07 7.80 -2.39 -0.02 2.05 16 13 N -0.70 -23.64 4.90 -491.56 -2.41 -26.05 16 14 C 0.09 3.83 5.42 86.30 0.47 4.30 16 15 C -0.01 -0.27 4.30 29.85 0.13 -0.14 16 16 C -0.54 -32.99 9.66 25.60 0.25 -32.74 16 17 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 18 C 0.01 0.46 5.47 84.65 0.46 0.93 16 19 N -0.95 -61.99 13.96 21.45 0.30 -61.70 16 20 Si 0.95 47.21 27.47 68.60 1.88 49.09 16 21 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 23 H -0.25 -12.36 6.54 99.48 0.65 -11.71 16 24 H 0.16 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.13 1.34 8.14 -2.39 -0.02 1.33 16 26 H 0.16 0.60 6.87 -2.39 -0.02 0.59 16 27 H 0.12 0.38 6.56 -2.39 -0.02 0.37 16 28 H 0.07 1.04 8.06 -2.39 -0.02 1.02 16 29 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.05 1.26 7.45 -2.39 -0.02 1.24 16 34 H 0.08 1.44 8.13 -2.39 -0.02 1.42 16 35 H 0.35 10.54 8.47 -89.70 -0.76 9.78 16 36 H 0.03 1.23 7.44 -2.39 -0.02 1.21 16 37 H 0.04 2.07 8.05 -2.39 -0.02 2.05 16 38 H 0.02 0.86 7.20 -2.39 -0.02 0.85 16 39 H 0.02 1.18 7.57 -2.38 -0.02 1.16 16 40 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 Total: -1.00 -86.78 324.81 -1.46 -88.23 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 0.20 Total: 10.37 kcal Atomic # 6 Polarization: -49.55 SS G_CDS: 3.29 Total: -46.27 kcal Atomic # 7 Polarization: -85.64 SS G_CDS: -2.11 Total: -87.75 kcal Atomic # 8 Polarization: -66.83 SS G_CDS: -4.44 Total: -71.28 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 1.88 Total: 49.09 kcal Atomic # 16 Polarization: 57.86 SS G_CDS: -0.27 Total: 57.59 kcal Total: -86.78 -1.46 -88.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336669983.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.665 kcal (2) G-P(sol) polarization free energy of solvation -86.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds