Wall clock time and date at job start Mon Mar 30 2020 01:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42091 * 108.57796 * 2 1 4 4 O 1.42101 * 108.57303 * 228.97548 * 2 1 3 5 5 C 1.81396 * 101.92105 * 114.48800 * 2 1 3 6 6 H 1.09002 * 109.47214 * 64.99939 * 5 2 1 7 7 C 1.52999 * 109.47550 * 305.00118 * 5 2 1 8 8 C 1.52997 * 109.47317 * 180.02562 * 7 5 2 9 9 C 1.53000 * 109.47060 * 59.99960 * 8 7 5 10 10 C 1.53002 * 109.47233 * 299.99657 * 9 8 7 11 11 C 1.52997 * 109.46817 * 60.00194 * 10 9 8 12 12 H 1.09001 * 109.47289 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47114 * 60.00039 * 11 10 9 14 14 C 1.46897 * 110.99854 * 85.00012 * 13 11 10 15 15 C 1.53008 * 109.47153 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.46975 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00432 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99912 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99828 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00231 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47045 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47263 * 119.99835 * 20 18 16 23 23 H 1.48502 * 109.47443 * 239.99634 * 20 18 16 24 24 H 1.09004 * 109.47016 * 305.50968 * 1 2 3 25 25 H 1.08998 * 109.47420 * 65.51442 * 1 2 3 26 26 H 1.09003 * 109.47195 * 185.51619 * 1 2 3 27 27 H 1.08996 * 109.46929 * 59.99320 * 7 5 2 28 28 H 1.09002 * 109.46716 * 300.00126 * 7 5 2 29 29 H 1.09002 * 109.47153 * 299.99641 * 8 7 5 30 30 H 1.09001 * 109.46832 * 179.97438 * 8 7 5 31 31 H 1.08992 * 109.47399 * 59.99823 * 9 8 7 32 32 H 1.09004 * 109.46724 * 180.02562 * 9 8 7 33 33 H 1.08993 * 109.47662 * 180.02562 * 10 9 8 34 34 H 1.09002 * 109.47075 * 300.00932 * 10 9 8 35 35 H 1.00894 * 111.00547 * 321.04743 * 13 11 10 36 36 H 1.08995 * 109.47393 * 300.00160 * 14 13 11 37 37 H 1.09006 * 109.47616 * 60.00192 * 14 13 11 38 38 H 1.08996 * 109.47074 * 299.99777 * 15 14 13 39 39 H 1.08998 * 109.46866 * 59.99867 * 15 14 13 40 40 H 0.97006 * 120.00321 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2666 -0.8842 -1.0162 5 6 2.1887 -0.7357 1.6152 6 1 1.8388 -1.7678 1.6343 7 6 1.4845 0.0619 2.7147 8 6 1.8011 -0.5583 4.0770 9 6 3.3126 -0.5271 4.3127 10 6 4.0168 -1.3248 3.2133 11 6 3.7002 -0.7046 1.8509 12 1 4.2015 -1.2731 1.0676 13 7 4.1713 0.6865 1.8248 14 6 5.5914 0.7545 1.4553 15 6 6.0448 2.2158 1.4394 16 6 7.5016 2.2855 1.0597 17 1 8.0493 1.3785 0.8510 18 6 8.1354 3.5074 0.9797 19 7 7.4685 4.6119 1.2344 20 14 9.9411 3.5939 0.5098 21 1 10.4578 2.2217 0.2750 22 1 10.0921 4.3979 -0.7297 23 1 10.7090 4.2311 1.6096 24 1 -0.3633 0.5969 0.8366 25 1 -0.3634 0.4259 -0.9352 26 1 -0.3634 -1.0229 0.0988 27 1 0.4079 0.0401 2.5464 28 1 1.8344 1.0940 2.6956 29 1 1.4515 -1.5905 4.0964 30 1 1.2998 0.0103 4.8603 31 1 3.6621 0.5051 4.2933 32 1 3.5381 -0.9694 5.2832 33 1 5.0934 -1.3030 3.3814 34 1 3.6671 -2.3570 3.2326 35 1 4.0060 1.1410 2.7103 36 1 6.1831 0.1987 2.1826 37 1 5.7305 0.3198 0.4654 38 1 5.4532 2.7719 0.7123 39 1 5.9058 2.6500 2.4294 40 1 7.9143 5.4717 1.1778 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336669985.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:09 Heat of formation + Delta-G solvation = -84.719608 kcal Electronic energy + Delta-G solvation = -20600.718662 eV Core-core repulsion = 17542.182032 eV Total energy + Delta-G solvation = -3058.536630 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.31333 -36.63923 -35.60439 -34.74769 -32.72054 -31.40094 -30.40361 -29.29591 -27.76335 -23.99370 -23.12071 -22.47614 -20.61131 -19.18620 -18.44704 -16.95527 -16.22826 -15.96711 -15.67752 -15.51590 -14.81979 -14.50450 -14.29450 -13.86376 -13.65875 -13.26349 -13.16628 -12.90641 -12.54516 -12.41781 -12.08586 -11.77423 -11.67855 -11.64973 -11.47895 -11.24879 -11.03310 -10.91339 -10.75616 -10.60777 -10.43822 -10.28914 -10.04442 -9.75417 -9.30790 -9.04205 -8.27428 -7.80126 -5.91428 -3.93494 0.19485 2.98174 3.36551 3.43737 3.47903 3.85824 4.11176 4.37197 4.47377 4.51608 4.66571 4.77659 4.85595 4.88007 5.07199 5.17063 5.19282 5.32456 5.38818 5.44495 5.50036 5.57838 5.66257 5.80720 5.92612 5.99051 6.02983 6.12004 6.28886 6.40956 6.45704 7.05759 7.47557 7.79419 7.89061 8.01355 8.20288 8.51958 9.14349 9.69569 11.20055 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.021528 B = 0.005114 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.344944 B = 5473.976146 C = 6148.519674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.673 4.673 2 S 2.428 3.572 3 O -0.890 6.890 4 O -0.951 6.951 5 C -0.556 4.556 6 H 0.127 0.873 7 C -0.110 4.110 8 C -0.109 4.109 9 C -0.125 4.125 10 C -0.139 4.139 11 C 0.099 3.901 12 H 0.088 0.912 13 N -0.681 5.681 14 C 0.066 3.934 15 C 0.025 3.975 16 C -0.519 4.519 17 H 0.054 0.946 18 C 0.057 3.943 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.285 1.285 24 H 0.127 0.873 25 H 0.124 0.876 26 H 0.120 0.880 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.344 0.656 36 H 0.018 0.982 37 H 0.059 0.941 38 H 0.032 0.968 39 H 0.013 0.987 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.580 -12.778 4.992 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.820 4.820 2 S 2.607 3.393 3 O -0.887 6.887 4 O -0.948 6.948 5 C -0.666 4.666 6 H 0.145 0.855 7 C -0.148 4.148 8 C -0.147 4.147 9 C -0.162 4.162 10 C -0.179 4.179 11 C -0.013 4.013 12 H 0.106 0.894 13 N -0.315 5.315 14 C -0.062 4.062 15 C -0.013 4.013 16 C -0.558 4.558 17 H 0.072 0.928 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.211 1.211 24 H 0.145 0.855 25 H 0.142 0.858 26 H 0.139 0.861 27 H 0.088 0.912 28 H 0.112 0.888 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.165 0.835 36 H 0.036 0.964 37 H 0.078 0.922 38 H 0.050 0.950 39 H 0.031 0.969 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.225 -12.157 3.666 20.603 hybrid contribution 0.766 -0.625 1.167 1.530 sum -15.459 -12.782 4.834 20.633 Atomic orbital electron populations 1.30517 1.29533 1.10665 1.11316 1.08003 0.77213 0.76759 0.77294 1.93674 1.76825 1.32829 1.85401 1.93559 1.78994 1.68058 1.54194 1.30211 1.05166 1.10963 1.20237 0.85475 1.21450 0.98811 1.00743 0.93797 1.21432 0.96423 1.00747 0.96101 1.21559 0.95087 1.01256 0.98322 1.22085 1.01032 0.99619 0.95209 1.21183 0.89717 0.92419 0.97970 0.89351 1.60822 1.21661 1.11261 1.37710 1.22212 0.83834 1.01589 0.98546 1.19074 0.95544 0.88984 0.97689 1.21219 0.95551 0.92475 1.46590 0.92774 1.24993 0.98021 0.95824 0.95536 1.69993 1.36080 0.97578 1.49510 0.86552 0.85425 0.78001 0.78079 1.19825 1.21004 1.21142 0.85476 0.85772 0.86149 0.91158 0.88764 0.92028 0.91519 0.91142 0.91781 0.91070 0.91722 0.83531 0.96382 0.92235 0.94953 0.96887 0.93129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -5.34 10.01 101.05 1.01 -4.33 16 2 S 2.43 31.48 4.85 -107.50 -0.52 30.96 16 3 O -0.89 -15.90 16.71 -57.83 -0.97 -16.87 16 4 O -0.95 -15.70 18.10 -57.83 -1.05 -16.75 16 5 C -0.56 -5.91 2.44 -26.73 -0.07 -5.97 16 6 H 0.13 0.95 8.14 -51.92 -0.42 0.53 16 7 C -0.11 -1.00 4.67 -26.73 -0.12 -1.13 16 8 C -0.11 -0.92 5.92 -26.73 -0.16 -1.08 16 9 C -0.12 -1.29 5.67 -26.73 -0.15 -1.44 16 10 C -0.14 -1.61 5.52 -26.73 -0.15 -1.76 16 11 C 0.10 1.36 2.30 -67.71 -0.16 1.21 16 12 H 0.09 1.28 7.80 -51.93 -0.41 0.87 16 13 N -0.68 -11.99 4.22 -106.72 -0.45 -12.44 16 14 C 0.07 1.42 5.42 -3.82 -0.02 1.40 16 15 C 0.02 0.66 5.23 -27.88 -0.15 0.52 16 16 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 17 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.61 13.29 55.43 0.74 -26.87 16 20 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 21 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H 0.13 0.78 6.77 -51.92 -0.35 0.43 16 25 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.12 0.67 8.14 -51.92 -0.42 0.24 16 27 H 0.07 0.43 6.39 -51.93 -0.33 0.10 16 28 H 0.09 1.03 7.21 -51.93 -0.37 0.65 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.83 6.26 -51.93 -0.32 0.50 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.91 7.45 -51.93 -0.39 0.52 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.34 5.73 5.56 -39.29 -0.22 5.51 16 36 H 0.02 0.37 7.44 -51.93 -0.39 -0.02 16 37 H 0.06 1.32 8.06 -51.93 -0.42 0.90 16 38 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 LS Contribution 322.05 15.07 4.85 4.85 Total: -1.00 -36.50 322.05 -9.33 -45.83 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.54 Total: 0.55 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: -0.37 Total: -26.46 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.29 Total: -39.32 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -2.01 Total: -33.62 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 16 Polarization: 31.48 SS G_CDS: -0.52 Total: 30.96 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -36.50 -9.33 -45.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336669985.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.890 kcal (2) G-P(sol) polarization free energy of solvation -36.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds