Wall clock time and date at job start Mon Mar 30 2020 01:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42091 * 108.57796 * 2 1 4 4 O 1.42101 * 108.57303 * 228.97548 * 2 1 3 5 5 C 1.81396 * 101.92105 * 114.48800 * 2 1 3 6 6 H 1.09002 * 109.47214 * 64.99939 * 5 2 1 7 7 C 1.52999 * 109.47550 * 305.00118 * 5 2 1 8 8 C 1.52997 * 109.47317 * 180.02562 * 7 5 2 9 9 C 1.53000 * 109.47060 * 59.99960 * 8 7 5 10 10 C 1.53002 * 109.47233 * 299.99657 * 9 8 7 11 11 C 1.52997 * 109.46817 * 60.00194 * 10 9 8 12 12 H 1.09001 * 109.47289 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47114 * 60.00039 * 11 10 9 14 14 C 1.46897 * 110.99854 * 85.00012 * 13 11 10 15 15 C 1.53008 * 109.47153 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.46975 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00432 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99912 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99828 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00231 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47045 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47263 * 119.99835 * 20 18 16 23 23 H 1.48502 * 109.47443 * 239.99634 * 20 18 16 24 24 H 1.09004 * 109.47016 * 305.50968 * 1 2 3 25 25 H 1.08998 * 109.47420 * 65.51442 * 1 2 3 26 26 H 1.09003 * 109.47195 * 185.51619 * 1 2 3 27 27 H 1.08996 * 109.46929 * 59.99320 * 7 5 2 28 28 H 1.09002 * 109.46716 * 300.00126 * 7 5 2 29 29 H 1.09002 * 109.47153 * 299.99641 * 8 7 5 30 30 H 1.09001 * 109.46832 * 179.97438 * 8 7 5 31 31 H 1.08992 * 109.47399 * 59.99823 * 9 8 7 32 32 H 1.09004 * 109.46724 * 180.02562 * 9 8 7 33 33 H 1.08993 * 109.47662 * 180.02562 * 10 9 8 34 34 H 1.09002 * 109.47075 * 300.00932 * 10 9 8 35 35 H 1.00894 * 111.00547 * 321.04743 * 13 11 10 36 36 H 1.08995 * 109.47393 * 300.00160 * 14 13 11 37 37 H 1.09006 * 109.47616 * 60.00192 * 14 13 11 38 38 H 1.08996 * 109.47074 * 299.99777 * 15 14 13 39 39 H 1.08998 * 109.46866 * 59.99867 * 15 14 13 40 40 H 0.97006 * 120.00321 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2666 -0.8842 -1.0162 5 6 2.1887 -0.7357 1.6152 6 1 1.8388 -1.7678 1.6343 7 6 1.4845 0.0619 2.7147 8 6 1.8011 -0.5583 4.0770 9 6 3.3126 -0.5271 4.3127 10 6 4.0168 -1.3248 3.2133 11 6 3.7002 -0.7046 1.8509 12 1 4.2015 -1.2731 1.0676 13 7 4.1713 0.6865 1.8248 14 6 5.5914 0.7545 1.4553 15 6 6.0448 2.2158 1.4394 16 6 7.5016 2.2855 1.0597 17 1 8.0493 1.3785 0.8510 18 6 8.1354 3.5074 0.9797 19 7 7.4685 4.6119 1.2344 20 14 9.9411 3.5939 0.5098 21 1 10.4578 2.2217 0.2750 22 1 10.0921 4.3979 -0.7297 23 1 10.7090 4.2311 1.6096 24 1 -0.3633 0.5969 0.8366 25 1 -0.3634 0.4259 -0.9352 26 1 -0.3634 -1.0229 0.0988 27 1 0.4079 0.0401 2.5464 28 1 1.8344 1.0940 2.6956 29 1 1.4515 -1.5905 4.0964 30 1 1.2998 0.0103 4.8603 31 1 3.6621 0.5051 4.2933 32 1 3.5381 -0.9694 5.2832 33 1 5.0934 -1.3030 3.3814 34 1 3.6671 -2.3570 3.2326 35 1 4.0060 1.1410 2.7103 36 1 6.1831 0.1987 2.1826 37 1 5.7305 0.3198 0.4654 38 1 5.4532 2.7719 0.7123 39 1 5.9058 2.6500 2.4294 40 1 7.9143 5.4717 1.1778 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336669985.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:09 Heat of formation + Delta-G solvation = -112.872602 kcal Electronic energy + Delta-G solvation = -20601.939467 eV Core-core repulsion = 17542.182032 eV Total energy + Delta-G solvation = -3059.757435 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.32570 -37.76140 -36.73704 -36.34734 -34.66316 -32.23079 -31.92531 -30.01637 -29.37345 -25.99995 -23.97670 -23.37199 -22.56835 -20.18176 -19.46885 -18.45802 -17.95663 -17.00731 -16.73317 -16.68014 -16.43334 -15.89638 -15.54770 -14.89834 -14.79199 -14.47150 -14.27547 -13.89509 -13.73141 -13.62491 -13.24200 -13.05979 -12.96394 -12.87028 -12.82484 -12.76497 -12.39684 -12.39115 -12.18722 -11.92159 -11.67107 -11.52413 -11.30377 -11.23676 -11.06247 -10.74762 -10.56642 -9.21832 -8.20147 -6.32138 -0.74205 1.38111 1.40133 1.53143 2.08408 2.39916 2.93216 3.12724 3.17816 3.35535 3.63925 3.71198 4.00036 4.11469 4.15194 4.22551 4.32723 4.38604 4.43906 4.50266 4.53154 4.59213 4.74683 4.90986 4.94656 5.04675 5.06788 5.13601 5.24291 5.26781 5.34540 5.44078 5.53292 5.69128 5.78917 6.12954 6.25303 6.55445 6.85427 7.36773 8.92587 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.021528 B = 0.005114 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.344944 B = 5473.976146 C = 6148.519674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.400 3.600 3 O -0.962 6.962 4 O -1.003 7.003 5 C -0.537 4.537 6 H 0.173 0.827 7 C -0.116 4.116 8 C -0.103 4.103 9 C -0.128 4.128 10 C -0.134 4.134 11 C 0.088 3.912 12 H 0.074 0.926 13 N -0.689 5.689 14 C 0.084 3.916 15 C 0.033 3.967 16 C -0.545 4.545 17 H 0.060 0.940 18 C -0.001 4.001 19 N -0.932 5.932 20 Si 0.970 3.030 21 H -0.262 1.262 22 H -0.279 1.279 23 H -0.274 1.274 24 H 0.154 0.846 25 H 0.131 0.869 26 H 0.158 0.842 27 H 0.113 0.887 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.347 0.653 36 H 0.027 0.973 37 H 0.046 0.954 38 H -0.011 1.011 39 H -0.006 1.006 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.318 -14.979 6.287 24.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.589 3.411 3 O -0.959 6.959 4 O -1.000 7.000 5 C -0.649 4.649 6 H 0.190 0.810 7 C -0.154 4.154 8 C -0.142 4.142 9 C -0.166 4.166 10 C -0.174 4.174 11 C -0.023 4.023 12 H 0.092 0.908 13 N -0.323 5.323 14 C -0.044 4.044 15 C -0.004 4.004 16 C -0.584 4.584 17 H 0.078 0.922 18 C -0.199 4.199 19 N -0.572 5.572 20 Si 0.794 3.206 21 H -0.186 1.186 22 H -0.204 1.204 23 H -0.199 1.199 24 H 0.173 0.827 25 H 0.149 0.851 26 H 0.177 0.823 27 H 0.132 0.868 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.168 0.832 36 H 0.046 0.954 37 H 0.065 0.935 38 H 0.007 0.993 39 H 0.012 0.988 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.928 -14.364 4.941 23.498 hybrid contribution 1.174 0.036 0.807 1.425 sum -16.754 -14.328 5.748 22.782 Atomic orbital electron populations 1.30195 1.22283 1.13934 1.13071 1.08181 0.80029 0.75112 0.77825 1.93608 1.79954 1.35774 1.86526 1.93490 1.81515 1.68322 1.56676 1.30034 1.02796 1.13590 1.18458 0.80958 1.21607 1.01121 0.99037 0.93631 1.21447 0.94538 1.02468 0.95707 1.21602 0.96874 0.99609 0.98474 1.22041 1.00223 1.01196 0.93930 1.21340 0.92018 0.89798 0.99157 0.90802 1.60680 1.18792 1.14575 1.38256 1.21766 0.86713 0.97678 0.98291 1.18888 0.94602 0.91923 0.95015 1.21646 0.96648 0.93068 1.47009 0.92225 1.26015 1.03510 0.95240 0.95100 1.70137 1.38461 0.98340 1.50255 0.85334 0.78764 0.78552 0.77961 1.18602 1.20441 1.19913 0.82735 0.85093 0.82327 0.86844 0.91374 0.89421 0.90110 0.93611 0.90379 0.93023 0.88829 0.83153 0.95440 0.93515 0.99259 0.98808 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -7.64 10.01 113.37 1.14 -6.51 16 2 S 2.40 61.75 4.85 -56.49 -0.27 61.47 16 3 O -0.96 -36.62 16.71 -127.37 -2.13 -38.75 16 4 O -1.00 -34.05 18.10 -127.37 -2.30 -36.35 16 5 C -0.54 -10.17 2.44 30.60 0.07 -10.10 16 6 H 0.17 1.73 8.14 -2.39 -0.02 1.71 16 7 C -0.12 -1.74 4.67 30.59 0.14 -1.60 16 8 C -0.10 -1.33 5.92 30.59 0.18 -1.15 16 9 C -0.13 -2.40 5.67 30.60 0.17 -2.23 16 10 C -0.13 -2.89 5.52 30.59 0.17 -2.72 16 11 C 0.09 2.40 2.30 44.92 0.10 2.51 16 12 H 0.07 2.20 7.80 -2.39 -0.02 2.19 16 13 N -0.69 -25.66 4.22 -491.56 -2.08 -27.74 16 14 C 0.08 3.86 5.42 86.31 0.47 4.33 16 15 C 0.03 1.92 5.23 29.85 0.16 2.07 16 16 C -0.55 -33.11 9.11 25.60 0.23 -32.87 16 17 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 18 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 19 N -0.93 -59.69 13.29 21.45 0.28 -59.41 16 20 Si 0.97 46.37 29.54 68.60 2.03 48.39 16 21 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 24 H 0.15 1.09 6.77 -2.39 -0.02 1.07 16 25 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.16 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.11 0.75 6.39 -2.39 -0.02 0.73 16 28 H 0.07 1.43 7.21 -2.39 -0.02 1.41 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 1.08 6.26 -2.39 -0.01 1.06 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 33 H 0.05 1.30 7.45 -2.39 -0.02 1.29 16 34 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.35 12.34 5.56 -89.70 -0.50 11.84 16 36 H 0.03 1.18 7.44 -2.39 -0.02 1.17 16 37 H 0.05 2.22 8.06 -2.38 -0.02 2.20 16 38 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 39 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 40 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -86.44 322.05 -0.66 -87.10 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.52 Total: 13.14 kcal Atomic # 6 Polarization: -51.15 SS G_CDS: 3.30 Total: -47.86 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -1.79 Total: -87.14 kcal Atomic # 8 Polarization: -70.67 SS G_CDS: -4.43 Total: -75.10 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Atomic # 16 Polarization: 61.75 SS G_CDS: -0.27 Total: 61.47 kcal Total: -86.44 -0.66 -87.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336669985.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.775 kcal (2) G-P(sol) polarization free energy of solvation -86.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds