Wall clock time and date at job start Mon Mar 30 2020 01:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 113.99932 * 2 1 4 4 C 1.52996 * 109.47308 * 179.97438 * 3 2 1 5 5 C 1.50698 * 115.55281 * 66.70340 * 4 3 2 6 6 O 1.21282 * 120.00273 * 243.74285 * 5 4 3 7 7 N 1.34780 * 119.99705 * 63.73421 * 5 4 3 8 8 C 1.39241 * 119.99552 * 184.61611 * 7 5 4 9 9 C 1.39477 * 119.83488 * 327.52790 * 8 7 5 10 10 C 1.36379 * 120.16875 * 179.72332 * 9 8 7 11 11 C 1.40871 * 119.82447 * 0.57192 * 10 9 8 12 12 C 1.41150 * 120.16413 * 179.68161 * 11 10 9 13 13 H 1.08000 * 120.00293 * 194.29398 * 12 11 10 14 14 C 1.39912 * 119.99822 * 14.29344 * 12 11 10 15 15 N 1.30872 * 119.99803 * 30.19701 * 14 12 11 16 16 Si 1.86798 * 120.00158 * 210.19711 * 14 12 11 17 17 H 1.48502 * 109.46903 * 59.99690 * 16 14 12 18 18 H 1.48497 * 109.47406 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.47115 * 300.00268 * 16 14 12 20 20 C 1.40870 * 119.67299 * 359.69892 * 11 10 9 21 21 C 1.36375 * 119.82996 * 0.02562 * 20 11 10 22 22 C 1.53005 * 117.50110 * 281.03311 * 4 3 2 23 23 C 1.53003 * 117.49955 * 212.37613 * 4 3 2 24 24 H 1.09007 * 109.46972 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47048 * 60.00192 * 1 2 3 26 26 H 1.08997 * 109.47327 * 299.99824 * 1 2 3 27 27 H 1.08996 * 109.47757 * 300.00193 * 3 2 1 28 28 H 1.09005 * 109.47300 * 59.99946 * 3 2 1 29 29 H 0.97001 * 120.00068 * 4.61924 * 7 5 4 30 30 H 1.08000 * 119.91780 * 359.97438 * 9 8 7 31 31 H 1.07996 * 120.08443 * 180.25567 * 10 9 8 32 32 H 0.97004 * 119.99626 * 179.97438 * 15 14 12 33 33 H 1.08005 * 120.08265 * 179.97438 * 20 11 10 34 34 H 1.07994 * 119.91417 * 179.97438 * 21 20 11 35 35 H 1.09006 * 117.49646 * 359.97438 * 22 4 3 36 36 H 1.08991 * 117.49939 * 145.01824 * 22 4 3 37 37 H 1.09001 * 117.49952 * 214.98034 * 23 4 3 38 38 H 1.08998 * 117.50078 * 359.97135 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1415 0.5971 -1.2477 6 8 4.7410 -0.4557 -1.1932 7 7 4.0171 1.2416 -2.4249 8 6 4.4925 0.6536 -3.5941 9 6 5.6172 -0.1700 -3.5489 10 6 6.0853 -0.7539 -4.6890 11 6 5.4370 -0.5136 -5.9164 12 6 5.9194 -1.1089 -7.1018 13 1 5.5779 -0.7529 -8.0626 14 6 6.8401 -2.1601 -7.0322 15 7 6.8270 -2.9746 -6.0078 16 14 8.0880 -2.4011 -8.4012 17 1 8.9366 -1.1879 -8.5165 18 1 8.9421 -3.5756 -8.0914 19 1 7.3767 -2.6314 -9.6843 20 6 4.3050 0.3240 -5.9548 21 6 3.8452 0.8963 -4.8056 22 6 4.2187 0.8703 1.3331 23 6 4.3298 2.2717 0.7275 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 1.6886 1.8464 0.8900 29 1 3.5964 2.1151 -2.4576 30 1 6.1162 -0.3491 -2.6080 31 1 6.9538 -1.3947 -4.6518 32 1 7.4651 -3.7036 -5.9598 33 1 3.8031 0.5130 -6.8923 34 1 2.9778 1.5390 -4.8336 35 1 3.5815 0.7498 2.2093 36 1 5.1066 0.2388 1.3066 37 1 5.2910 2.5616 0.3029 38 1 3.7659 3.0731 1.2048 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351894856.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:34 Heat of formation + Delta-G solvation = -31.563975 kcal Electronic energy + Delta-G solvation = -20735.533691 eV Core-core repulsion = 17543.858111 eV Total energy + Delta-G solvation = -3191.675580 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.04454 -38.15113 -37.17185 -35.99323 -34.38658 -32.92775 -29.45756 -29.11439 -28.30457 -25.92520 -25.10750 -22.98150 -22.49174 -21.27034 -20.47192 -18.90080 -17.36182 -17.20153 -16.44938 -16.07496 -15.79693 -15.40722 -15.07890 -14.44981 -14.14241 -13.94323 -13.55854 -12.91394 -12.71765 -12.58994 -12.23037 -11.95727 -11.90460 -11.66898 -11.47755 -11.35138 -11.07317 -10.98644 -10.64444 -10.48877 -10.31556 -10.00654 -9.77951 -9.70008 -9.38077 -8.95703 -8.51431 -7.45798 -7.08771 -6.81239 -4.21668 2.64535 2.99372 3.07072 3.09595 3.16394 3.24857 3.46505 3.77104 3.91387 4.01602 4.56820 4.59205 4.82446 4.87216 5.04031 5.15499 5.23341 5.32506 5.47579 5.48749 5.58929 5.72749 5.80706 5.85233 6.09224 6.20209 6.48811 6.89198 7.01386 7.06463 7.12491 7.18921 7.36530 7.64892 7.74611 8.04759 8.09852 8.27474 8.40718 8.65601 8.88022 8.90160 9.08747 10.07914 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.029221 B = 0.003953 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.979067 B = 7082.132020 C = 7320.968959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.107 3.893 4 C -0.160 4.160 5 C 0.539 3.461 6 O -0.521 6.521 7 N -0.645 5.645 8 C -0.019 4.019 9 C -0.083 4.083 10 C -0.176 4.176 11 C 0.105 3.895 12 C -0.460 4.460 13 H 0.080 0.920 14 C 0.082 3.918 15 N -0.766 5.766 16 Si 0.903 3.097 17 H -0.262 1.262 18 H -0.278 1.278 19 H -0.264 1.264 20 C -0.226 4.226 21 C -0.098 4.098 22 C -0.135 4.135 23 C -0.154 4.154 24 H 0.087 0.913 25 H 0.041 0.959 26 H 0.039 0.961 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.392 0.608 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.284 0.716 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.087 9.285 10.898 15.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C 0.030 3.970 4 C -0.163 4.163 5 C 0.324 3.676 6 O -0.397 6.397 7 N -0.287 5.287 8 C -0.111 4.111 9 C -0.103 4.103 10 C -0.196 4.196 11 C 0.102 3.898 12 C -0.488 4.488 13 H 0.098 0.902 14 C -0.139 4.139 15 N -0.389 5.389 16 Si 0.726 3.274 17 H -0.186 1.186 18 H -0.203 1.203 19 H -0.189 1.189 20 C -0.246 4.246 21 C -0.118 4.118 22 C -0.173 4.173 23 C -0.191 4.191 24 H 0.105 0.895 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.225 0.775 30 H 0.127 0.873 31 H 0.137 0.863 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.468 8.111 11.050 15.157 hybrid contribution -0.076 0.447 -0.655 0.796 sum -6.544 8.558 10.395 14.971 Atomic orbital electron populations 1.22750 0.81100 1.02979 0.99676 1.88029 1.19408 1.27030 1.95271 1.21851 0.89451 0.85303 1.00426 1.21391 0.93719 1.06808 0.94384 1.19186 0.80527 0.84452 0.83387 1.90676 1.41367 1.22387 1.85223 1.42841 1.59388 1.20288 1.06171 1.17155 1.00606 1.08991 0.84332 1.20603 0.94445 0.96967 0.98238 1.20997 1.02423 1.04302 0.91884 1.17622 0.89361 0.89766 0.93013 1.19535 1.21302 1.13774 0.94172 0.90190 1.26003 0.97244 0.94029 0.96665 1.69946 1.29943 1.09682 1.29337 0.86462 0.80642 0.78657 0.81618 1.18603 1.20270 1.18868 1.20405 1.00648 1.07440 0.96069 1.19993 0.98073 1.01350 0.92420 1.22932 1.02742 0.97588 0.94016 1.23100 1.01298 0.92447 1.02257 0.89491 0.94013 0.94287 0.92593 0.92574 0.77514 0.87318 0.86333 0.90480 0.88826 0.89451 0.88016 0.87514 0.87790 0.87904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.38 -5.60 10.65 -35.23 -0.38 -5.98 16 3 C 0.11 1.29 5.76 37.16 0.21 1.50 16 4 C -0.16 -2.23 2.16 -155.66 -0.34 -2.56 16 5 C 0.54 10.41 6.90 -10.98 -0.08 10.33 16 6 O -0.52 -12.54 13.89 5.56 0.08 -12.46 16 7 N -0.65 -12.18 5.31 -9.74 -0.05 -12.24 16 8 C -0.02 -0.44 6.36 -83.57 -0.53 -0.97 16 9 C -0.08 -2.16 8.64 -39.79 -0.34 -2.50 16 10 C -0.18 -4.88 8.77 -39.26 -0.34 -5.22 16 11 C 0.11 2.89 5.65 -106.80 -0.60 2.29 16 12 C -0.46 -12.39 8.98 -37.85 -0.34 -12.73 16 13 H 0.08 2.05 8.00 -52.49 -0.42 1.63 16 14 C 0.08 2.09 4.95 -17.33 -0.09 2.00 16 15 N -0.77 -20.28 11.10 55.55 0.62 -19.67 16 16 Si 0.90 18.64 29.65 -169.99 -5.04 13.60 16 17 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 18 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 20 C -0.23 -5.64 9.74 -39.26 -0.38 -6.02 16 21 C -0.10 -2.24 9.89 -39.79 -0.39 -2.64 16 22 C -0.14 -1.67 9.77 -26.69 -0.26 -1.93 16 23 C -0.15 -1.60 9.92 -26.69 -0.26 -1.86 16 24 H 0.09 0.84 8.14 -51.92 -0.42 0.42 16 25 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 29 H 0.39 5.84 8.81 -40.82 -0.36 5.48 16 30 H 0.11 2.87 5.99 -52.49 -0.31 2.55 16 31 H 0.12 3.37 5.90 -52.49 -0.31 3.06 16 32 H 0.28 6.80 8.30 -40.82 -0.34 6.47 16 33 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16 34 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.11 1.49 7.96 -51.93 -0.41 1.08 16 37 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 326.58 15.07 4.92 4.92 Total: -1.00 -32.59 326.58 -7.66 -40.26 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -5.18 Total: 10.44 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -2.64 Total: -18.88 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 0.56 Total: -31.90 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.30 Total: -18.44 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.04 Total: 13.60 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.59 -7.66 -40.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351894856.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.692 kcal (2) G-P(sol) polarization free energy of solvation -32.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds