Wall clock time and date at job start Mon Mar 30 2020 01:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 113.99932 * 2 1 4 4 C 1.52996 * 109.47308 * 179.97438 * 3 2 1 5 5 C 1.50698 * 115.55281 * 66.70340 * 4 3 2 6 6 O 1.21282 * 120.00273 * 243.74285 * 5 4 3 7 7 N 1.34780 * 119.99705 * 63.73421 * 5 4 3 8 8 C 1.39241 * 119.99552 * 184.61611 * 7 5 4 9 9 C 1.39477 * 119.83488 * 327.52790 * 8 7 5 10 10 C 1.36379 * 120.16875 * 179.72332 * 9 8 7 11 11 C 1.40871 * 119.82447 * 0.57192 * 10 9 8 12 12 C 1.41150 * 120.16413 * 179.68161 * 11 10 9 13 13 H 1.08000 * 120.00293 * 194.29398 * 12 11 10 14 14 C 1.39912 * 119.99822 * 14.29344 * 12 11 10 15 15 N 1.30872 * 119.99803 * 30.19701 * 14 12 11 16 16 Si 1.86798 * 120.00158 * 210.19711 * 14 12 11 17 17 H 1.48502 * 109.46903 * 59.99690 * 16 14 12 18 18 H 1.48497 * 109.47406 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.47115 * 300.00268 * 16 14 12 20 20 C 1.40870 * 119.67299 * 359.69892 * 11 10 9 21 21 C 1.36375 * 119.82996 * 0.02562 * 20 11 10 22 22 C 1.53005 * 117.50110 * 281.03311 * 4 3 2 23 23 C 1.53003 * 117.49955 * 212.37613 * 4 3 2 24 24 H 1.09007 * 109.46972 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47048 * 60.00192 * 1 2 3 26 26 H 1.08997 * 109.47327 * 299.99824 * 1 2 3 27 27 H 1.08996 * 109.47757 * 300.00193 * 3 2 1 28 28 H 1.09005 * 109.47300 * 59.99946 * 3 2 1 29 29 H 0.97001 * 120.00068 * 4.61924 * 7 5 4 30 30 H 1.08000 * 119.91780 * 359.97438 * 9 8 7 31 31 H 1.07996 * 120.08443 * 180.25567 * 10 9 8 32 32 H 0.97004 * 119.99626 * 179.97438 * 15 14 12 33 33 H 1.08005 * 120.08265 * 179.97438 * 20 11 10 34 34 H 1.07994 * 119.91417 * 179.97438 * 21 20 11 35 35 H 1.09006 * 117.49646 * 359.97438 * 22 4 3 36 36 H 1.08991 * 117.49939 * 145.01824 * 22 4 3 37 37 H 1.09001 * 117.49952 * 214.98034 * 23 4 3 38 38 H 1.08998 * 117.50078 * 359.97135 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1415 0.5971 -1.2477 6 8 4.7410 -0.4557 -1.1932 7 7 4.0171 1.2416 -2.4249 8 6 4.4925 0.6536 -3.5941 9 6 5.6172 -0.1700 -3.5489 10 6 6.0853 -0.7539 -4.6890 11 6 5.4370 -0.5136 -5.9164 12 6 5.9194 -1.1089 -7.1018 13 1 5.5779 -0.7529 -8.0626 14 6 6.8401 -2.1601 -7.0322 15 7 6.8270 -2.9746 -6.0078 16 14 8.0880 -2.4011 -8.4012 17 1 8.9366 -1.1879 -8.5165 18 1 8.9421 -3.5756 -8.0914 19 1 7.3767 -2.6314 -9.6843 20 6 4.3050 0.3240 -5.9548 21 6 3.8452 0.8963 -4.8056 22 6 4.2187 0.8703 1.3331 23 6 4.3298 2.2717 0.7275 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 1.6886 1.8464 -0.8899 28 1 1.6886 1.8464 0.8900 29 1 3.5964 2.1151 -2.4576 30 1 6.1162 -0.3491 -2.6080 31 1 6.9538 -1.3947 -4.6518 32 1 7.4651 -3.7036 -5.9598 33 1 3.8031 0.5130 -6.8923 34 1 2.9778 1.5390 -4.8336 35 1 3.5815 0.7498 2.2093 36 1 5.1066 0.2388 1.3066 37 1 5.2910 2.5616 0.3029 38 1 3.7659 3.0731 1.2048 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351894856.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:33 Heat of formation + Delta-G solvation = -53.102951 kcal Electronic energy + Delta-G solvation = -20736.467691 eV Core-core repulsion = 17543.858111 eV Total energy + Delta-G solvation = -3192.609580 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.49414 -39.56962 -38.62999 -37.17366 -36.20388 -34.76487 -31.43908 -30.97879 -29.23011 -27.28216 -26.44221 -24.48019 -23.40033 -23.19480 -22.23894 -20.39628 -19.29818 -18.53783 -17.87701 -17.16350 -17.13169 -16.75878 -16.46466 -15.83165 -15.65420 -15.51582 -14.92396 -14.64136 -14.46180 -13.98842 -13.79528 -13.35959 -13.32660 -13.17762 -12.82183 -12.73226 -12.51343 -12.31900 -12.30263 -11.84627 -11.69022 -11.57926 -11.28923 -11.20090 -10.71732 -10.60449 -10.33247 -9.46376 -9.01525 -8.72386 -6.23414 0.82635 1.13996 1.35399 1.44458 1.51358 1.76513 2.16776 2.28039 2.44510 2.67155 3.10890 3.62388 3.72546 3.77477 3.91765 4.08063 4.36337 4.41539 4.48030 4.50694 4.53408 4.64150 4.70862 4.80816 4.85344 4.95032 4.99010 5.07604 5.18633 5.20761 5.27790 5.44636 5.66495 5.85998 6.08173 6.10557 6.25070 6.31247 6.65134 6.76414 6.88647 7.00498 7.44522 8.19802 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.029221 B = 0.003953 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.979067 B = 7082.132020 C = 7320.968959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.423 6.423 3 C 0.106 3.894 4 C -0.177 4.177 5 C 0.533 3.467 6 O -0.579 6.579 7 N -0.635 5.635 8 C -0.012 4.012 9 C -0.098 4.098 10 C -0.205 4.205 11 C 0.074 3.926 12 C -0.495 4.495 13 H 0.085 0.915 14 C 0.040 3.960 15 N -0.806 5.806 16 Si 0.983 3.017 17 H -0.259 1.259 18 H -0.268 1.268 19 H -0.252 1.252 20 C -0.235 4.235 21 C -0.092 4.092 22 C -0.146 4.146 23 C -0.116 4.116 24 H 0.084 0.916 25 H 0.048 0.952 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.415 0.585 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.292 0.708 33 H 0.110 0.890 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.642 11.715 11.440 18.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.343 6.343 3 C 0.030 3.970 4 C -0.181 4.181 5 C 0.321 3.679 6 O -0.459 6.459 7 N -0.279 5.279 8 C -0.106 4.106 9 C -0.118 4.118 10 C -0.225 4.225 11 C 0.072 3.928 12 C -0.523 4.523 13 H 0.103 0.897 14 C -0.179 4.179 15 N -0.430 5.430 16 Si 0.802 3.198 17 H -0.183 1.183 18 H -0.193 1.193 19 H -0.175 1.175 20 C -0.255 4.255 21 C -0.112 4.112 22 C -0.183 4.183 23 C -0.153 4.153 24 H 0.102 0.898 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.114 0.886 29 H 0.252 0.748 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.128 0.872 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.063 10.592 11.607 17.661 hybrid contribution 0.330 -0.283 -0.700 0.824 sum -7.734 10.309 10.907 16.883 Atomic orbital electron populations 1.22912 0.79246 1.03477 1.01290 1.87975 1.21653 1.29033 1.95644 1.22044 0.87455 0.84705 1.02829 1.21368 0.95341 1.09558 0.91803 1.20241 0.79128 0.83669 0.84834 1.90653 1.43861 1.25133 1.86255 1.42758 1.59025 1.21191 1.04904 1.17263 0.99264 1.07620 0.86404 1.20637 0.95873 0.98196 0.97135 1.20913 1.02823 1.05667 0.93064 1.17974 0.90605 0.91130 0.93119 1.19842 1.23283 1.14908 0.94237 0.89650 1.26971 0.98549 0.93009 0.99354 1.69998 1.30994 1.10427 1.31562 0.85259 0.77594 0.78738 0.78215 1.18340 1.19254 1.17547 1.20709 1.00004 1.07075 0.97729 1.20358 0.98772 1.00882 0.91153 1.23019 1.02039 0.99076 0.94151 1.23281 1.00617 0.92160 0.99271 0.89754 0.93366 0.91585 0.91558 0.88578 0.74766 0.88689 0.88482 0.89765 0.87151 0.84961 0.85495 0.90388 0.88377 0.83388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.42 -11.73 10.65 -148.98 -1.59 -13.32 16 3 C 0.11 2.18 5.76 71.98 0.41 2.60 16 4 C -0.18 -4.57 2.16 -52.93 -0.11 -4.68 16 5 C 0.53 20.52 6.90 87.66 0.60 21.13 16 6 O -0.58 -29.15 13.89 -3.03 -0.04 -29.20 16 7 N -0.64 -23.29 5.31 -303.11 -1.61 -24.90 16 8 C -0.01 -0.57 6.36 38.56 0.25 -0.33 16 9 C -0.10 -5.39 8.64 22.13 0.19 -5.20 16 10 C -0.20 -12.00 8.77 22.48 0.20 -11.80 16 11 C 0.07 4.24 5.65 -21.28 -0.12 4.12 16 12 C -0.50 -27.47 8.98 23.39 0.21 -27.26 16 13 H 0.09 4.46 8.00 -2.91 -0.02 4.44 16 14 C 0.04 2.06 4.95 85.24 0.42 2.48 16 15 N -0.81 -44.60 11.10 21.82 0.24 -44.36 16 16 Si 0.98 38.80 29.65 68.60 2.03 40.83 16 17 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 18 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 19 H -0.25 -9.37 7.11 99.48 0.71 -8.67 16 20 C -0.24 -11.75 9.74 22.48 0.22 -11.54 16 21 C -0.09 -4.07 9.89 22.13 0.22 -3.85 16 22 C -0.15 -3.34 9.77 30.62 0.30 -3.04 16 23 C -0.12 -1.99 9.92 30.62 0.30 -1.69 16 24 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 25 H 0.05 0.80 8.14 -2.38 -0.02 0.79 16 26 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.10 1.23 8.08 -2.38 -0.02 1.21 16 29 H 0.42 11.21 8.81 -92.71 -0.82 10.40 16 30 H 0.10 5.37 5.99 -2.91 -0.02 5.36 16 31 H 0.10 5.97 5.90 -2.91 -0.02 5.95 16 32 H 0.29 14.54 8.30 -92.71 -0.77 13.77 16 33 H 0.11 5.03 8.06 -2.91 -0.02 5.00 16 34 H 0.13 4.63 8.06 -2.91 -0.02 4.60 16 35 H 0.13 2.24 8.14 -2.38 -0.02 2.22 16 36 H 0.08 2.24 7.96 -2.39 -0.02 2.22 16 37 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.15 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -76.72 326.58 3.63 -73.09 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: 0.26 Total: 35.17 kcal Atomic # 6 Polarization: -41.66 SS G_CDS: 4.34 Total: -37.32 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -1.37 Total: -69.26 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -1.63 Total: -42.52 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -76.72 3.63 -73.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351894856.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.988 kcal (2) G-P(sol) polarization free energy of solvation -76.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds