Wall clock time and date at job start Mon Mar 30 2020 02:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00328 * 2 1 4 4 H 1.48501 * 109.46948 * 269.99766 * 3 2 1 5 5 H 1.48492 * 109.47225 * 29.99445 * 3 2 1 6 6 H 1.48499 * 109.47148 * 150.00070 * 3 2 1 7 7 C 1.37883 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99902 * 173.55095 * 7 2 1 9 9 C 1.50700 * 119.99791 * 353.55855 * 7 2 1 10 10 C 1.52995 * 115.55426 * 85.39881 * 9 7 2 11 11 N 1.46504 * 109.46632 * 65.14189 * 10 9 7 12 12 C 1.34774 * 119.99674 * 178.28083 * 11 10 9 13 13 O 1.21280 * 120.00397 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99840 * 179.97438 * 12 11 10 15 15 C 1.53001 * 109.47014 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.47014 * 179.97438 * 15 14 12 17 17 C 1.38594 * 120.79811 * 90.00148 * 16 15 14 18 18 N 1.32344 * 119.10104 * 179.72063 * 17 16 15 19 19 C 1.31793 * 120.81678 * 0.27659 * 18 17 16 20 20 N 1.31794 * 121.75731 * 0.02562 * 19 18 17 21 21 C 1.32329 * 120.81733 * 359.97302 * 20 19 18 22 22 C 1.52998 * 117.49577 * 231.07298 * 9 7 2 23 23 C 1.53000 * 117.49567 * 299.72929 * 9 7 2 24 24 H 0.96999 * 119.99632 * 5.07130 * 1 2 3 25 25 H 1.08997 * 109.47407 * 305.14646 * 10 9 7 26 26 H 1.09000 * 109.47526 * 185.13908 * 10 9 7 27 27 H 0.96996 * 120.00297 * 358.28177 * 11 10 9 28 28 H 1.08995 * 109.47251 * 60.00048 * 14 12 11 29 29 H 1.08998 * 109.47472 * 300.00080 * 14 12 11 30 30 H 1.09003 * 109.47063 * 60.00275 * 15 14 12 31 31 H 1.09001 * 109.47604 * 299.99806 * 15 14 12 32 32 H 1.07997 * 120.45238 * 359.97438 * 17 16 15 33 33 H 1.08002 * 119.11681 * 179.97438 * 19 18 17 34 34 H 1.08004 * 120.44657 * 180.02562 * 21 20 19 35 35 H 1.09003 * 117.49889 * 214.99775 * 22 9 7 36 36 H 1.08999 * 117.50013 * 0.02562 * 22 9 7 37 37 H 1.08996 * 117.50216 * 359.97438 * 23 9 7 38 38 H 1.09006 * 117.49731 * 144.97625 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0794 -1.1971 -0.1045 9 6 1.2581 -2.4950 0.1475 10 6 0.7019 -3.0869 -1.1490 11 7 1.8110 -3.4600 -2.0305 12 6 1.5597 -4.0373 -3.2222 13 8 0.4155 -4.2475 -3.5650 14 6 2.7005 -4.4206 -4.1292 15 6 2.1457 -5.0526 -5.4074 16 6 3.2865 -5.4353 -6.3147 17 6 3.8697 -6.6898 -6.2309 18 7 4.8659 -6.9923 -7.0479 19 6 5.3068 -6.1163 -7.9284 20 7 4.7806 -4.9125 -8.0325 21 6 3.7816 -4.5392 -7.2490 22 6 1.7469 -3.4728 1.2179 23 6 0.4417 -2.7005 1.4251 24 1 -0.4849 0.8368 -0.0743 25 1 0.0753 -2.3469 -1.6469 26 1 0.1073 -3.9710 -0.9191 27 1 2.7261 -3.2916 -1.7566 28 1 3.3446 -5.1375 -3.6200 29 1 3.2770 -3.5313 -4.3838 30 1 1.5014 -4.3360 -5.9169 31 1 1.5695 -5.9421 -5.1525 32 1 3.5134 -7.4121 -5.5114 33 1 6.1215 -6.3922 -8.5815 34 1 3.3546 -3.5513 -7.3397 35 1 1.6723 -4.5379 0.9984 36 1 2.6081 -3.1751 1.8160 37 1 0.4449 -1.8950 2.1594 38 1 -0.4918 -3.2571 1.3418 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352643078.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:11 Heat of formation + Delta-G solvation = 19.707538 kcal Electronic energy + Delta-G solvation = -20138.306064 eV Core-core repulsion = 16981.146534 eV Total energy + Delta-G solvation = -3157.159529 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.23485 -39.19124 -36.79846 -34.83272 -33.90653 -33.33615 -32.02446 -30.50405 -26.85899 -25.59878 -24.80544 -24.58774 -22.10289 -21.22758 -19.76726 -19.26597 -17.85226 -17.80964 -16.89434 -16.15184 -15.29772 -15.18346 -14.79447 -14.68145 -14.42716 -13.89024 -13.85159 -13.76203 -13.32218 -12.87866 -12.66405 -12.29680 -11.80063 -11.63179 -11.20362 -11.04434 -11.02736 -11.02530 -10.97717 -10.57029 -10.32153 -9.76409 -9.67085 -9.43663 -9.29730 -9.02038 -8.54930 -8.34037 -8.13686 -6.13031 -4.22067 0.64945 0.83901 3.12766 3.21707 3.30247 3.31859 3.51508 3.78686 3.94344 3.99917 4.30746 4.38285 4.60156 4.62690 4.95256 5.14197 5.16253 5.17232 5.26437 5.43566 5.53597 5.62424 5.95180 5.97491 5.99591 6.18069 6.28258 6.41342 6.51090 6.64140 6.71361 6.83093 7.04432 7.21886 7.37844 7.43268 7.76104 7.83182 8.22671 8.28423 8.77809 8.81560 9.45152 10.94714 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022057 B = 0.003568 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.150865 B = 7846.560711 C = 8487.401860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.502 4.502 8 H 0.060 0.940 9 C 0.028 3.972 10 C 0.163 3.837 11 N -0.702 5.702 12 C 0.503 3.497 13 O -0.559 6.559 14 C -0.136 4.136 15 C -0.057 4.057 16 C -0.180 4.180 17 C 0.148 3.852 18 N -0.520 5.520 19 C 0.281 3.719 20 N -0.519 5.519 21 C 0.150 3.850 22 C -0.211 4.211 23 C -0.148 4.148 24 H 0.262 0.738 25 H 0.072 0.928 26 H 0.037 0.963 27 H 0.400 0.600 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.168 0.832 33 H 0.194 0.806 34 H 0.169 0.831 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.368 -9.930 -10.113 15.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.027 3.973 10 C 0.040 3.960 11 N -0.351 5.351 12 C 0.288 3.712 13 O -0.438 6.438 14 C -0.176 4.176 15 C -0.096 4.096 16 C -0.184 4.184 17 C -0.017 4.017 18 N -0.233 5.233 19 C -0.006 4.006 20 N -0.232 5.232 21 C -0.016 4.016 22 C -0.248 4.248 23 C -0.186 4.186 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.055 0.945 27 H 0.234 0.766 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.185 0.815 33 H 0.210 0.790 34 H 0.186 0.814 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.134 -10.190 -10.872 16.521 hybrid contribution 0.184 1.346 0.748 1.550 sum 7.319 -8.844 -10.125 15.307 Atomic orbital electron populations 1.69973 1.05911 1.26993 1.48083 1.24989 0.94800 0.98972 0.94244 0.86633 0.79953 0.83511 0.78182 1.20643 1.21124 1.19800 1.20336 0.92816 0.88626 1.52213 0.92209 1.19032 0.98604 0.93929 0.85754 1.20998 0.87349 0.96902 0.90783 1.46005 1.11519 1.59754 1.17788 1.20418 0.90185 0.78271 0.82315 1.90667 1.22862 1.55853 1.74460 1.21646 0.97952 1.02569 0.95477 1.20224 0.93627 1.02721 0.92985 1.21819 1.00332 0.96522 0.99717 1.23224 0.89647 0.94466 0.94401 1.68435 1.12709 1.36281 1.05861 1.24949 0.97032 0.85091 0.93575 1.68438 1.10587 1.19031 1.25147 1.23257 0.90186 0.99470 0.88711 1.23025 0.98705 0.95632 1.07447 1.22494 0.92267 1.01085 1.02782 0.92799 0.90952 0.94486 0.76570 0.89162 0.88920 0.89363 0.89462 0.81468 0.78961 0.81379 0.91662 0.90352 0.89816 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.78 12.91 55.43 0.72 -23.06 16 2 C 0.07 1.93 5.39 -17.82 -0.10 1.83 16 3 Si 0.89 20.11 29.55 -169.99 -5.02 15.09 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.50 -12.56 8.63 -34.44 -0.30 -12.86 16 8 H 0.06 1.47 7.82 -52.49 -0.41 1.05 16 9 C 0.03 0.63 1.38 -155.66 -0.21 0.41 16 10 C 0.16 3.55 5.50 -4.04 -0.02 3.52 16 11 N -0.70 -12.66 5.47 -60.29 -0.33 -12.99 16 12 C 0.50 8.35 7.83 -10.98 -0.09 8.27 16 13 O -0.56 -11.32 15.98 5.56 0.09 -11.23 16 14 C -0.14 -1.53 5.68 -27.88 -0.16 -1.69 16 15 C -0.06 -0.58 4.68 -27.88 -0.13 -0.71 16 16 C -0.18 -1.71 5.17 -104.35 -0.54 -2.25 16 17 C 0.15 1.41 11.01 -17.20 -0.19 1.22 16 18 N -0.52 -5.51 10.44 -14.58 -0.15 -5.66 16 19 C 0.28 2.77 12.28 -92.16 -1.13 1.64 16 20 N -0.52 -5.63 10.44 -14.58 -0.15 -5.78 16 21 C 0.15 1.47 11.01 -17.20 -0.19 1.28 16 22 C -0.21 -4.24 9.96 -26.70 -0.27 -4.50 16 23 C -0.15 -3.30 9.42 -26.70 -0.25 -3.55 16 24 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 25 H 0.07 1.83 8.14 -51.93 -0.42 1.41 16 26 H 0.04 0.80 8.09 -51.93 -0.42 0.38 16 27 H 0.40 6.55 8.37 -40.82 -0.34 6.21 16 28 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.09 0.96 8.06 -51.93 -0.42 0.54 16 31 H 0.09 0.91 8.06 -51.93 -0.42 0.49 16 32 H 0.17 1.21 8.06 -52.49 -0.42 0.78 16 33 H 0.19 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.17 1.33 8.06 -52.48 -0.42 0.91 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 38 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 333.94 15.07 5.03 5.03 Total: -1.00 -30.38 333.94 -8.77 -39.15 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.37 Total: 6.84 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -3.57 Total: -7.39 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.08 Total: -47.49 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.38 -8.77 -39.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352643078.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.857 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds