Wall clock time and date at job start Mon Mar 30 2020 02:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00328 * 2 1 4 4 H 1.48501 * 109.46948 * 269.99766 * 3 2 1 5 5 H 1.48492 * 109.47225 * 29.99445 * 3 2 1 6 6 H 1.48499 * 109.47148 * 150.00070 * 3 2 1 7 7 C 1.37883 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99902 * 173.55095 * 7 2 1 9 9 C 1.50700 * 119.99791 * 353.55855 * 7 2 1 10 10 C 1.52995 * 115.55426 * 85.39881 * 9 7 2 11 11 N 1.46504 * 109.46632 * 65.14189 * 10 9 7 12 12 C 1.34774 * 119.99674 * 178.28083 * 11 10 9 13 13 O 1.21280 * 120.00397 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99840 * 179.97438 * 12 11 10 15 15 C 1.53001 * 109.47014 * 179.97438 * 14 12 11 16 16 C 1.50703 * 109.47014 * 179.97438 * 15 14 12 17 17 C 1.38594 * 120.79811 * 90.00148 * 16 15 14 18 18 N 1.32344 * 119.10104 * 179.72063 * 17 16 15 19 19 C 1.31793 * 120.81678 * 0.27659 * 18 17 16 20 20 N 1.31794 * 121.75731 * 0.02562 * 19 18 17 21 21 C 1.32329 * 120.81733 * 359.97302 * 20 19 18 22 22 C 1.52998 * 117.49577 * 231.07298 * 9 7 2 23 23 C 1.53000 * 117.49567 * 299.72929 * 9 7 2 24 24 H 0.96999 * 119.99632 * 5.07130 * 1 2 3 25 25 H 1.08997 * 109.47407 * 305.14646 * 10 9 7 26 26 H 1.09000 * 109.47526 * 185.13908 * 10 9 7 27 27 H 0.96996 * 120.00297 * 358.28177 * 11 10 9 28 28 H 1.08995 * 109.47251 * 60.00048 * 14 12 11 29 29 H 1.08998 * 109.47472 * 300.00080 * 14 12 11 30 30 H 1.09003 * 109.47063 * 60.00275 * 15 14 12 31 31 H 1.09001 * 109.47604 * 299.99806 * 15 14 12 32 32 H 1.07997 * 120.45238 * 359.97438 * 17 16 15 33 33 H 1.08002 * 119.11681 * 179.97438 * 19 18 17 34 34 H 1.08004 * 120.44657 * 180.02562 * 21 20 19 35 35 H 1.09003 * 117.49889 * 214.99775 * 22 9 7 36 36 H 1.08999 * 117.50013 * 0.02562 * 22 9 7 37 37 H 1.08996 * 117.50216 * 359.97438 * 23 9 7 38 38 H 1.09006 * 117.49731 * 144.97625 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0794 -1.1971 -0.1045 9 6 1.2581 -2.4950 0.1475 10 6 0.7019 -3.0869 -1.1490 11 7 1.8110 -3.4600 -2.0305 12 6 1.5597 -4.0373 -3.2222 13 8 0.4155 -4.2475 -3.5650 14 6 2.7005 -4.4206 -4.1292 15 6 2.1457 -5.0526 -5.4074 16 6 3.2865 -5.4353 -6.3147 17 6 3.8697 -6.6898 -6.2309 18 7 4.8659 -6.9923 -7.0479 19 6 5.3068 -6.1163 -7.9284 20 7 4.7806 -4.9125 -8.0325 21 6 3.7816 -4.5392 -7.2490 22 6 1.7469 -3.4728 1.2179 23 6 0.4417 -2.7005 1.4251 24 1 -0.4849 0.8368 -0.0743 25 1 0.0753 -2.3469 -1.6469 26 1 0.1073 -3.9710 -0.9191 27 1 2.7261 -3.2916 -1.7566 28 1 3.3446 -5.1375 -3.6200 29 1 3.2770 -3.5313 -4.3838 30 1 1.5014 -4.3360 -5.9169 31 1 1.5695 -5.9421 -5.1525 32 1 3.5134 -7.4121 -5.5114 33 1 6.1215 -6.3922 -8.5815 34 1 3.3546 -3.5513 -7.3397 35 1 1.6723 -4.5379 0.9984 36 1 2.6081 -3.1751 1.8160 37 1 0.4449 -1.8950 2.1594 38 1 -0.4918 -3.2571 1.3418 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352643078.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:10 Heat of formation + Delta-G solvation = 1.467412 kcal Electronic energy + Delta-G solvation = -20139.097015 eV Core-core repulsion = 16981.146534 eV Total energy + Delta-G solvation = -3157.950480 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.97310 -40.59232 -38.49335 -35.72239 -34.88672 -34.64348 -33.96139 -31.42113 -28.32457 -27.33515 -25.77620 -25.52757 -23.09101 -22.83916 -21.32584 -20.84930 -18.55989 -18.52521 -18.37544 -17.75125 -16.72596 -16.56743 -16.40427 -15.79104 -15.53054 -15.29798 -14.71106 -14.54421 -14.48768 -14.30513 -14.09434 -13.54073 -13.39666 -13.18787 -12.91006 -12.83197 -12.34445 -12.08792 -12.03841 -11.80623 -11.79275 -11.48564 -10.91632 -10.83487 -10.45886 -10.32775 -10.17853 -10.01634 -9.78050 -8.09578 -6.22686 -0.07660 0.11356 1.42306 1.45924 1.53603 1.80289 2.40114 2.45641 2.83057 3.19066 3.28480 3.31349 3.49563 3.69081 3.73613 3.87159 4.03040 4.24351 4.34598 4.36905 4.56806 4.58541 4.66731 4.70255 4.75263 4.82084 5.00419 5.08035 5.15093 5.17939 5.28323 5.47092 5.60269 5.62263 5.71626 5.79356 5.99448 6.37439 6.81539 6.86772 7.11114 7.44870 7.47450 8.97887 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022057 B = 0.003568 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.150865 B = 7846.560711 C = 8487.401860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.948 3.052 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.505 4.505 8 H 0.065 0.935 9 C 0.006 3.994 10 C 0.179 3.821 11 N -0.702 5.702 12 C 0.501 3.499 13 O -0.598 6.598 14 C -0.123 4.123 15 C -0.047 4.047 16 C -0.177 4.177 17 C 0.147 3.853 18 N -0.537 5.537 19 C 0.277 3.723 20 N -0.539 5.539 21 C 0.143 3.857 22 C -0.176 4.176 23 C -0.163 4.163 24 H 0.258 0.742 25 H 0.028 0.972 26 H 0.035 0.965 27 H 0.410 0.590 28 H 0.118 0.882 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.189 0.811 33 H 0.218 0.782 34 H 0.183 0.817 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.427 -10.855 -10.503 17.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.176 4.176 3 Si 0.775 3.225 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.188 1.188 7 C -0.543 4.543 8 H 0.083 0.917 9 C 0.006 3.994 10 C 0.055 3.945 11 N -0.351 5.351 12 C 0.289 3.711 13 O -0.480 6.480 14 C -0.162 4.162 15 C -0.087 4.087 16 C -0.181 4.181 17 C -0.019 4.019 18 N -0.250 5.250 19 C -0.010 4.010 20 N -0.252 5.252 21 C -0.022 4.022 22 C -0.213 4.213 23 C -0.201 4.201 24 H 0.067 0.933 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.246 0.754 28 H 0.136 0.864 29 H 0.127 0.873 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.206 0.794 33 H 0.234 0.766 34 H 0.200 0.800 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.237 -11.123 -11.264 18.329 hybrid contribution -0.463 1.585 0.850 1.858 sum 8.774 -9.538 -10.414 16.626 Atomic orbital electron populations 1.70103 1.07291 1.27309 1.49850 1.25694 0.95412 1.02036 0.94410 0.85705 0.78931 0.79870 0.78036 1.20441 1.21745 1.18845 1.20674 0.93162 0.89589 1.50836 0.91737 1.19064 0.99519 0.94438 0.86402 1.20515 0.87985 0.95403 0.90643 1.45922 1.10972 1.60116 1.18079 1.21344 0.91074 0.76747 0.81955 1.90653 1.25093 1.57177 1.75090 1.21635 0.95938 1.03978 0.94693 1.20088 0.93694 1.02346 0.92531 1.21641 1.00094 0.96658 0.99726 1.23611 0.89106 0.94791 0.94347 1.68511 1.13371 1.36641 1.06484 1.25482 0.97281 0.84737 0.93542 1.68497 1.11275 1.19648 1.25790 1.23564 0.89955 1.00214 0.88501 1.23009 0.97248 0.96326 1.04714 1.22436 0.93819 1.01451 1.02385 0.93253 0.95406 0.94695 0.75389 0.86396 0.87319 0.90302 0.89568 0.79406 0.76605 0.80044 0.89173 0.89647 0.91980 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.51 12.91 21.45 0.28 -50.24 16 2 C 0.03 1.31 5.39 84.66 0.46 1.76 16 3 Si 0.95 41.24 29.55 68.60 2.03 43.27 16 4 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 7 C -0.50 -24.96 8.63 25.60 0.22 -24.74 16 8 H 0.06 3.06 7.82 -2.91 -0.02 3.04 16 9 C 0.01 0.29 1.38 -52.93 -0.07 0.22 16 10 C 0.18 7.85 5.50 86.38 0.48 8.32 16 11 N -0.70 -24.51 5.47 -463.06 -2.54 -27.05 16 12 C 0.50 16.03 7.83 87.66 0.69 16.72 16 13 O -0.60 -24.18 15.98 -3.03 -0.05 -24.22 16 14 C -0.12 -2.44 5.68 29.85 0.17 -2.27 16 15 C -0.05 -0.88 4.68 29.85 0.14 -0.74 16 16 C -0.18 -2.98 5.17 -19.69 -0.10 -3.08 16 17 C 0.15 2.43 11.01 84.70 0.93 3.37 16 18 N -0.54 -10.25 10.44 -200.04 -2.09 -12.34 16 19 C 0.28 4.93 12.28 180.88 2.22 7.15 16 20 N -0.54 -10.76 10.44 -200.04 -2.09 -12.85 16 21 C 0.14 2.55 11.01 84.70 0.93 3.49 16 22 C -0.18 -6.70 9.96 30.62 0.30 -6.40 16 23 C -0.16 -7.24 9.42 30.62 0.29 -6.95 16 24 H 0.26 13.92 8.32 -92.71 -0.77 13.15 16 25 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.03 1.52 8.09 -2.39 -0.02 1.50 16 27 H 0.41 12.60 8.37 -92.71 -0.78 11.83 16 28 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.08 1.63 8.06 -2.39 -0.02 1.61 16 31 H 0.09 1.64 8.06 -2.39 -0.02 1.62 16 32 H 0.19 2.17 8.06 -2.91 -0.02 2.14 16 33 H 0.22 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 35 H 0.09 3.00 8.14 -2.39 -0.02 2.99 16 36 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 37 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.07 2.98 8.14 -2.38 -0.02 2.96 16 Total: -1.00 -65.75 333.94 2.49 -63.26 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.29 Total: 23.31 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 6.65 Total: -3.15 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -6.43 Total: -102.47 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.05 Total: -24.22 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -65.75 2.49 -63.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352643078.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.730 kcal (2) G-P(sol) polarization free energy of solvation -65.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds