Wall clock time and date at job start Mon Mar 30 2020 01:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42097 * 108.57971 * 2 1 4 4 O 1.42099 * 108.57976 * 228.96626 * 2 1 3 5 5 C 1.81408 * 101.91685 * 114.48126 * 2 1 3 6 6 H 1.08992 * 109.47429 * 300.00117 * 5 2 1 7 7 C 1.53002 * 109.46808 * 60.00041 * 5 2 1 8 8 C 1.52997 * 109.46817 * 179.97438 * 7 5 2 9 9 C 1.53005 * 109.47452 * 300.00239 * 8 7 5 10 10 C 1.52999 * 109.47159 * 59.99536 * 9 8 7 11 11 H 1.09002 * 109.46716 * 60.00455 * 10 9 8 12 12 N 1.46894 * 109.46927 * 180.02562 * 10 9 8 13 13 C 1.46903 * 111.00270 * 275.00239 * 12 10 9 14 14 C 1.53002 * 109.46994 * 180.02562 * 13 12 10 15 15 C 1.50698 * 109.46839 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00321 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00192 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99585 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00430 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47005 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46901 * 120.00235 * 19 17 15 22 22 H 1.48492 * 109.47211 * 240.00448 * 19 17 15 23 23 C 1.52997 * 109.47317 * 300.00546 * 10 9 8 24 24 H 1.08995 * 109.47031 * 305.52237 * 1 2 3 25 25 H 1.09006 * 109.47053 * 65.51572 * 1 2 3 26 26 H 1.08998 * 109.47551 * 185.51454 * 1 2 3 27 27 H 1.08993 * 109.47662 * 299.99907 * 7 5 2 28 28 H 1.09002 * 109.47075 * 60.00413 * 7 5 2 29 29 H 1.09002 * 109.47153 * 60.00231 * 8 7 5 30 30 H 1.09001 * 109.47289 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47360 * 180.02562 * 9 8 7 32 32 H 1.09002 * 109.46935 * 300.00125 * 9 8 7 33 33 H 1.00907 * 110.99954 * 151.05315 * 12 10 9 34 34 H 1.09000 * 109.47021 * 300.00052 * 13 12 10 35 35 H 1.08998 * 109.47037 * 60.00492 * 13 12 10 36 36 H 1.09000 * 109.47032 * 299.99742 * 14 13 12 37 37 H 1.08998 * 109.47074 * 60.00211 * 14 13 12 38 38 H 0.97006 * 119.99413 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.47153 * 299.99641 * 23 10 9 40 40 H 1.09001 * 109.46832 * 179.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8843 -1.0160 5 6 2.1886 -0.7355 1.6154 6 1 1.7609 -0.1170 2.4043 7 6 1.5882 -2.1410 1.6873 8 6 1.9047 -2.7616 3.0495 9 6 3.4215 -2.8450 3.2320 10 6 4.0219 -1.4396 3.1600 11 1 3.5944 -0.8210 3.9492 12 7 5.4782 -1.5197 3.3346 13 6 5.8378 -1.5320 4.7589 14 6 7.3590 -1.6154 4.9001 15 6 7.7278 -1.6286 6.3612 16 1 6.9546 -1.5826 7.1138 17 6 9.0524 -1.7005 6.7373 18 7 9.9940 -1.7570 5.8208 19 14 9.5097 -1.7162 8.5484 20 1 8.2756 -1.6435 9.3711 21 1 10.2410 -2.9697 8.8634 22 1 10.3759 -0.5485 8.8503 23 6 3.7054 -0.8190 1.7978 24 1 -0.3633 0.5971 0.8364 25 1 -0.3633 0.4259 -0.9353 26 1 -0.3634 -1.0229 0.0988 27 1 0.5077 -2.0817 1.5569 28 1 2.0160 -2.7597 0.8984 29 1 1.4772 -2.1431 3.8387 30 1 1.4773 -3.7630 3.1007 31 1 3.6469 -3.2875 4.2023 32 1 3.8489 -3.4635 2.4428 33 1 5.9425 -0.7656 2.8510 34 1 5.4789 -0.6181 5.2322 35 1 5.3799 -2.3953 5.2418 36 1 7.7183 -2.5291 4.4268 37 1 7.8166 -0.7519 4.4173 38 1 10.9259 -1.8071 6.0854 39 1 4.1329 -1.4375 1.0086 40 1 4.1328 0.1825 1.7467 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352860789.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:16 Heat of formation + Delta-G solvation = -94.294367 kcal Electronic energy + Delta-G solvation = -19656.136638 eV Core-core repulsion = 16597.184816 eV Total energy + Delta-G solvation = -3058.951822 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.99634 -37.21981 -36.24790 -35.27621 -32.93279 -31.24730 -30.71445 -29.69951 -27.56244 -24.20089 -23.22853 -22.00134 -20.50246 -19.94053 -19.00201 -17.15909 -16.41345 -16.23141 -16.11922 -15.26896 -15.15636 -14.68335 -14.33022 -14.31911 -13.85663 -13.59483 -13.39348 -12.97400 -12.73765 -12.44713 -12.30428 -12.21638 -12.02945 -11.88612 -11.48795 -11.35372 -11.22650 -11.11277 -10.94146 -10.84485 -10.69837 -10.44361 -10.02504 -9.92557 -9.35906 -9.12430 -8.35806 -7.85924 -5.99838 -4.02527 -0.29948 2.44475 3.30937 3.34413 3.38277 3.41995 3.67356 4.10495 4.16682 4.41349 4.44734 4.57301 4.68088 4.80943 4.90419 5.03542 5.16633 5.19696 5.25017 5.32020 5.36179 5.48530 5.63917 5.75558 5.86128 5.91037 6.04170 6.24518 6.31405 6.35846 6.49183 6.97899 7.47264 7.72472 7.81786 7.94606 8.08109 8.43151 9.04991 9.61318 11.11595 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.037226 B = 0.003253 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.983917 B = 8605.319580 C = 8947.924281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.417 3.583 3 O -0.941 6.941 4 O -0.936 6.936 5 C -0.561 4.561 6 H 0.136 0.864 7 C -0.109 4.109 8 C -0.111 4.111 9 C -0.111 4.111 10 C 0.097 3.903 11 H 0.042 0.958 12 N -0.689 5.689 13 C 0.067 3.933 14 C 0.024 3.976 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.057 3.943 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.109 4.109 24 H 0.127 0.873 25 H 0.127 0.873 26 H 0.130 0.870 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.338 0.662 34 H 0.015 0.985 35 H 0.058 0.942 36 H 0.026 0.974 37 H 0.014 0.986 38 H 0.260 0.740 39 H 0.089 0.911 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.483 1.266 -10.244 24.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.600 3.400 3 O -0.938 6.938 4 O -0.933 6.933 5 C -0.671 4.671 6 H 0.154 0.846 7 C -0.147 4.147 8 C -0.150 4.150 9 C -0.149 4.149 10 C -0.014 4.014 11 H 0.060 0.940 12 N -0.320 5.320 13 C -0.061 4.061 14 C -0.013 4.013 15 C -0.560 4.560 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.532 5.532 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.148 4.148 24 H 0.146 0.854 25 H 0.146 0.854 26 H 0.148 0.852 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.156 0.844 34 H 0.033 0.967 35 H 0.077 0.923 36 H 0.044 0.956 37 H 0.032 0.968 38 H 0.070 0.930 39 H 0.108 0.892 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.705 0.898 -11.005 24.352 hybrid contribution -0.435 0.764 1.929 2.120 sum -22.140 1.663 -9.076 23.985 Atomic orbital electron populations 1.30309 1.27287 1.11580 1.11620 1.08090 0.78229 0.75709 0.77955 1.93601 1.78982 1.34598 1.86593 1.93592 1.78800 1.66844 1.54034 1.30146 1.06041 1.08701 1.22203 0.84624 1.21487 0.99763 0.92394 1.01072 1.21473 0.97244 1.00702 0.95567 1.21567 0.93292 0.97003 1.03058 1.21369 0.90062 0.95842 0.94139 0.94027 1.60626 1.04950 1.51717 1.14708 1.22204 1.00463 0.98461 0.84982 1.19079 0.87828 0.97815 0.96605 1.21204 0.91997 1.50647 0.92182 0.92758 1.25011 0.96632 0.95316 0.97447 1.69988 1.00069 1.50500 1.32606 0.86532 0.78446 0.77594 0.85386 1.19800 1.20976 1.21024 1.21554 0.89633 1.02725 1.00845 0.85380 0.85400 0.85179 0.90960 0.89496 0.91849 0.91216 0.91350 0.90954 0.84363 0.96676 0.92309 0.95605 0.96774 0.93028 0.89203 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.83 10.17 101.05 1.03 -1.80 16 2 S 2.42 20.47 4.88 -107.50 -0.52 19.95 16 3 O -0.94 -11.69 18.10 -57.83 -1.05 -12.74 16 4 O -0.94 -11.25 17.91 -57.83 -1.04 -12.28 16 5 C -0.56 -4.50 2.58 -26.73 -0.07 -4.57 16 6 H 0.14 0.80 8.14 -51.93 -0.42 0.38 16 7 C -0.11 -0.78 4.95 -26.73 -0.13 -0.91 16 8 C -0.11 -0.96 5.92 -26.73 -0.16 -1.12 16 9 C -0.11 -1.36 5.42 -26.73 -0.15 -1.51 16 10 C 0.10 1.32 2.49 -67.72 -0.17 1.15 16 11 H 0.04 0.57 7.80 -51.93 -0.41 0.17 16 12 N -0.69 -12.01 6.31 -106.73 -0.67 -12.68 16 13 C 0.07 1.39 5.42 -3.82 -0.02 1.37 16 14 C 0.02 0.63 5.23 -27.88 -0.15 0.49 16 15 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 16 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -27.05 13.29 55.43 0.74 -26.32 16 19 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 C -0.11 -1.24 4.48 -26.73 -0.12 -1.36 16 24 H 0.13 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 26 H 0.13 0.33 6.87 -51.92 -0.36 -0.03 16 27 H 0.07 0.28 6.55 -51.93 -0.34 -0.06 16 28 H 0.09 0.66 8.06 -51.93 -0.42 0.24 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.93 7.46 -51.93 -0.39 0.54 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.34 5.74 8.34 -39.29 -0.33 5.42 16 34 H 0.01 0.31 8.06 -51.93 -0.42 -0.11 16 35 H 0.06 1.22 7.44 -51.93 -0.39 0.83 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16 LS Contribution 330.61 15.07 4.98 4.98 Total: -1.00 -35.90 330.61 -9.73 -45.63 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.81 Total: -1.38 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: -0.34 Total: -21.85 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.06 Total: -39.00 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -2.08 Total: -25.02 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 20.47 SS G_CDS: -0.52 Total: 19.95 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.90 -9.73 -45.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352860789.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.665 kcal (2) G-P(sol) polarization free energy of solvation -35.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds