Wall clock time and date at job start Mon Mar 30 2020 01:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42097 * 108.57971 * 2 1 4 4 O 1.42099 * 108.57976 * 228.96626 * 2 1 3 5 5 C 1.81408 * 101.91685 * 114.48126 * 2 1 3 6 6 H 1.08992 * 109.47429 * 300.00117 * 5 2 1 7 7 C 1.53002 * 109.46808 * 60.00041 * 5 2 1 8 8 C 1.52997 * 109.46817 * 179.97438 * 7 5 2 9 9 C 1.53005 * 109.47452 * 300.00239 * 8 7 5 10 10 C 1.52999 * 109.47159 * 59.99536 * 9 8 7 11 11 H 1.09002 * 109.46716 * 60.00455 * 10 9 8 12 12 N 1.46894 * 109.46927 * 180.02562 * 10 9 8 13 13 C 1.46903 * 111.00270 * 275.00239 * 12 10 9 14 14 C 1.53002 * 109.46994 * 180.02562 * 13 12 10 15 15 C 1.50698 * 109.46839 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00321 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00192 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99585 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00430 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47005 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46901 * 120.00235 * 19 17 15 22 22 H 1.48492 * 109.47211 * 240.00448 * 19 17 15 23 23 C 1.52997 * 109.47317 * 300.00546 * 10 9 8 24 24 H 1.08995 * 109.47031 * 305.52237 * 1 2 3 25 25 H 1.09006 * 109.47053 * 65.51572 * 1 2 3 26 26 H 1.08998 * 109.47551 * 185.51454 * 1 2 3 27 27 H 1.08993 * 109.47662 * 299.99907 * 7 5 2 28 28 H 1.09002 * 109.47075 * 60.00413 * 7 5 2 29 29 H 1.09002 * 109.47153 * 60.00231 * 8 7 5 30 30 H 1.09001 * 109.47289 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47360 * 180.02562 * 9 8 7 32 32 H 1.09002 * 109.46935 * 300.00125 * 9 8 7 33 33 H 1.00907 * 110.99954 * 151.05315 * 12 10 9 34 34 H 1.09000 * 109.47021 * 300.00052 * 13 12 10 35 35 H 1.08998 * 109.47037 * 60.00492 * 13 12 10 36 36 H 1.09000 * 109.47032 * 299.99742 * 14 13 12 37 37 H 1.08998 * 109.47074 * 60.00211 * 14 13 12 38 38 H 0.97006 * 119.99413 * 179.97438 * 18 17 15 39 39 H 1.09002 * 109.47153 * 299.99641 * 23 10 9 40 40 H 1.09001 * 109.46832 * 179.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8843 -1.0160 5 6 2.1886 -0.7355 1.6154 6 1 1.7609 -0.1170 2.4043 7 6 1.5882 -2.1410 1.6873 8 6 1.9047 -2.7616 3.0495 9 6 3.4215 -2.8450 3.2320 10 6 4.0219 -1.4396 3.1600 11 1 3.5944 -0.8210 3.9492 12 7 5.4782 -1.5197 3.3346 13 6 5.8378 -1.5320 4.7589 14 6 7.3590 -1.6154 4.9001 15 6 7.7278 -1.6286 6.3612 16 1 6.9546 -1.5826 7.1138 17 6 9.0524 -1.7005 6.7373 18 7 9.9940 -1.7570 5.8208 19 14 9.5097 -1.7162 8.5484 20 1 8.2756 -1.6435 9.3711 21 1 10.2410 -2.9697 8.8634 22 1 10.3759 -0.5485 8.8503 23 6 3.7054 -0.8190 1.7978 24 1 -0.3633 0.5971 0.8364 25 1 -0.3633 0.4259 -0.9353 26 1 -0.3634 -1.0229 0.0988 27 1 0.5077 -2.0817 1.5569 28 1 2.0160 -2.7597 0.8984 29 1 1.4772 -2.1431 3.8387 30 1 1.4773 -3.7630 3.1007 31 1 3.6469 -3.2875 4.2023 32 1 3.8489 -3.4635 2.4428 33 1 5.9425 -0.7656 2.8510 34 1 5.4789 -0.6181 5.2322 35 1 5.3799 -2.3953 5.2418 36 1 7.7183 -2.5291 4.4268 37 1 7.8166 -0.7519 4.4173 38 1 10.9259 -1.8071 6.0854 39 1 4.1329 -1.4375 1.0086 40 1 4.1328 0.1825 1.7467 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352860789.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:15 Heat of formation + Delta-G solvation = -122.320268 kcal Electronic energy + Delta-G solvation = -19657.351932 eV Core-core repulsion = 16597.184816 eV Total energy + Delta-G solvation = -3060.167117 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.94322 -38.00318 -37.01991 -36.72434 -34.88880 -32.12184 -32.03842 -30.39306 -28.96654 -26.00967 -24.18356 -22.95323 -22.29404 -20.85956 -19.68810 -18.56207 -17.81388 -17.06439 -16.83546 -16.65388 -16.37349 -16.00814 -15.67856 -15.18429 -14.97104 -14.56124 -14.18648 -13.93885 -13.84783 -13.56845 -13.39622 -13.09278 -13.04660 -13.00535 -12.94059 -12.67465 -12.52138 -12.40309 -12.13154 -11.98474 -11.79465 -11.62753 -11.48116 -11.34777 -11.14919 -10.74961 -10.58756 -9.30674 -8.21832 -6.33813 -0.91204 1.39424 1.40134 1.53455 1.87772 2.39204 2.70882 3.08154 3.11595 3.19922 3.55794 3.75776 3.80028 4.13231 4.14833 4.17976 4.32853 4.34148 4.43641 4.45446 4.52896 4.57483 4.60426 4.90217 4.96797 4.99939 5.04441 5.09722 5.13116 5.26698 5.32274 5.42809 5.50453 5.65402 5.77872 6.13041 6.28387 6.51294 6.83861 7.35754 8.90655 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.037226 B = 0.003253 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.983917 B = 8605.319580 C = 8947.924281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.632 4.632 2 S 2.413 3.587 3 O -0.991 6.991 4 O -0.982 6.982 5 C -0.554 4.554 6 H 0.165 0.835 7 C -0.113 4.113 8 C -0.106 4.106 9 C -0.113 4.113 10 C 0.095 3.905 11 H 0.047 0.953 12 N -0.700 5.700 13 C 0.087 3.913 14 C 0.030 3.970 15 C -0.544 4.544 16 H 0.061 0.939 17 C -0.002 4.002 18 N -0.933 5.933 19 Si 0.969 3.031 20 H -0.260 1.260 21 H -0.278 1.278 22 H -0.278 1.278 23 C -0.113 4.113 24 H 0.157 0.843 25 H 0.139 0.861 26 H 0.159 0.841 27 H 0.120 0.880 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.337 0.663 34 H 0.018 0.982 35 H 0.059 0.941 36 H -0.007 1.007 37 H -0.011 1.011 38 H 0.264 0.736 39 H 0.077 0.923 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.934 1.298 -9.110 27.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.786 4.786 2 S 2.602 3.398 3 O -0.988 6.988 4 O -0.980 6.980 5 C -0.664 4.664 6 H 0.183 0.817 7 C -0.151 4.151 8 C -0.145 4.145 9 C -0.152 4.152 10 C -0.015 4.015 11 H 0.065 0.935 12 N -0.331 5.331 13 C -0.041 4.041 14 C -0.007 4.007 15 C -0.582 4.582 16 H 0.080 0.920 17 C -0.199 4.199 18 N -0.573 5.573 19 Si 0.794 3.206 20 H -0.184 1.184 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.152 4.152 24 H 0.175 0.825 25 H 0.157 0.843 26 H 0.178 0.822 27 H 0.138 0.862 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.155 0.845 34 H 0.037 0.963 35 H 0.078 0.922 36 H 0.011 0.989 37 H 0.008 0.992 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -25.128 0.932 -9.886 27.019 hybrid contribution 0.591 0.736 1.527 1.795 sum -24.537 1.667 -8.359 25.976 Atomic orbital electron populations 1.30079 1.20471 1.14357 1.13666 1.07834 0.80727 0.73994 0.77275 1.93539 1.81528 1.36691 1.87091 1.93534 1.81271 1.67402 1.55760 1.30091 1.03275 1.10203 1.22842 0.81742 1.21626 1.02619 0.91057 0.99765 1.21461 0.93833 1.02227 0.96944 1.21593 0.96515 0.95518 1.01526 1.21502 0.87273 0.97206 0.95554 0.93505 1.60568 1.08025 1.52034 1.12464 1.21789 0.96569 0.98563 0.87216 1.18939 0.91434 0.94966 0.95406 1.21637 0.92631 1.50686 0.93277 0.92041 1.26022 0.96541 0.94598 1.02782 1.70129 1.00589 1.51293 1.35261 0.85335 0.78499 0.77807 0.78998 1.18393 1.20324 1.20333 1.21500 0.92860 1.01838 0.99004 0.82486 0.84271 0.82244 0.86189 0.90366 0.90522 0.89631 0.93164 0.92315 0.84483 0.96338 0.92219 0.98870 0.99246 0.92735 0.90483 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -2.31 10.17 113.37 1.15 -1.16 16 2 S 2.41 37.36 4.88 -56.49 -0.28 37.08 16 3 O -0.99 -24.55 18.10 -127.37 -2.30 -26.86 16 4 O -0.98 -23.53 17.91 -127.37 -2.28 -25.81 16 5 C -0.55 -7.64 2.58 30.60 0.08 -7.56 16 6 H 0.16 1.31 8.14 -2.39 -0.02 1.29 16 7 C -0.11 -1.21 4.95 30.59 0.15 -1.06 16 8 C -0.11 -1.51 5.92 30.60 0.18 -1.33 16 9 C -0.11 -2.73 5.42 30.60 0.17 -2.57 16 10 C 0.09 2.58 2.49 44.92 0.11 2.69 16 11 H 0.05 1.24 7.80 -2.39 -0.02 1.22 16 12 N -0.70 -25.44 6.31 -491.58 -3.10 -28.54 16 13 C 0.09 3.75 5.42 86.30 0.47 4.21 16 14 C 0.03 1.64 5.23 29.85 0.16 1.80 16 15 C -0.54 -31.57 9.11 25.60 0.23 -31.34 16 16 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 17 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 18 N -0.93 -58.00 13.29 21.45 0.28 -57.72 16 19 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 20 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 C -0.11 -2.61 4.48 30.59 0.14 -2.47 16 24 H 0.16 -0.17 8.14 -2.39 -0.02 -0.19 16 25 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.16 -0.24 6.87 -2.39 -0.02 -0.25 16 27 H 0.12 0.19 6.55 -2.39 -0.02 0.18 16 28 H 0.08 1.02 8.06 -2.39 -0.02 1.00 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 1.37 7.46 -2.39 -0.02 1.35 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 33 H 0.34 12.17 8.34 -89.69 -0.75 11.43 16 34 H 0.02 0.77 8.06 -2.39 -0.02 0.75 16 35 H 0.06 2.53 7.44 -2.39 -0.02 2.51 16 36 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 37 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 38 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.07 1.71 8.12 -2.39 -0.02 1.69 16 Total: -1.00 -82.05 330.61 -2.09 -84.14 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.26 Total: 9.37 kcal Atomic # 6 Polarization: -41.71 SS G_CDS: 3.30 Total: -38.41 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -2.82 Total: -86.26 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -4.59 Total: -52.67 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: 37.36 SS G_CDS: -0.28 Total: 37.08 kcal Total: -82.05 -2.09 -84.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352860789.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.178 kcal (2) G-P(sol) polarization free energy of solvation -82.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds