Wall clock time and date at job start Mon Mar 30 2020 01:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42096 * 108.57914 * 2 1 4 4 O 1.42097 * 108.57862 * 228.97302 * 2 1 3 5 5 C 1.81404 * 101.92151 * 114.48674 * 2 1 3 6 6 H 1.08993 * 109.47080 * 299.99489 * 5 2 1 7 7 C 1.53002 * 109.46960 * 60.00025 * 5 2 1 8 8 C 1.53001 * 109.46637 * 179.97438 * 7 5 2 9 9 C 1.52996 * 109.47486 * 299.99742 * 8 7 5 10 10 C 1.53002 * 109.46972 * 60.00463 * 9 8 7 11 11 H 1.09002 * 109.47070 * 179.97438 * 10 9 8 12 12 N 1.46899 * 109.47394 * 59.99875 * 10 9 8 13 13 C 1.46897 * 111.00355 * 84.99974 * 12 10 9 14 14 C 1.52994 * 109.47637 * 180.02562 * 13 12 10 15 15 C 1.50698 * 109.47254 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00321 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99675 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99402 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00318 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46772 * 90.00014 * 19 17 15 21 21 H 1.48497 * 109.47293 * 209.99992 * 19 17 15 22 22 H 1.48498 * 109.47054 * 330.00581 * 19 17 15 23 23 C 1.52997 * 109.46817 * 299.99733 * 10 9 8 24 24 H 1.09003 * 109.46909 * 305.50950 * 1 2 3 25 25 H 1.08998 * 109.47094 * 65.51488 * 1 2 3 26 26 H 1.09006 * 109.46951 * 185.51895 * 1 2 3 27 27 H 1.08996 * 109.47407 * 60.00271 * 7 5 2 28 28 H 1.08992 * 109.47063 * 299.99875 * 7 5 2 29 29 H 1.09001 * 109.47109 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.47086 * 60.00158 * 8 7 5 31 31 H 1.08996 * 109.47452 * 300.00003 * 9 8 7 32 32 H 1.09000 * 109.47054 * 180.02562 * 9 8 7 33 33 H 1.00898 * 111.00393 * 208.95929 * 12 10 9 34 34 H 1.09006 * 109.46948 * 300.00869 * 13 12 10 35 35 H 1.09006 * 109.47033 * 59.99701 * 13 12 10 36 36 H 1.09008 * 109.47073 * 300.00564 * 14 13 12 37 37 H 1.08997 * 109.47237 * 59.99919 * 14 13 12 38 38 H 0.96999 * 119.99380 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.47533 * 179.97438 * 23 10 9 40 40 H 1.08996 * 109.47853 * 300.00202 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7357 1.6153 6 1 1.7611 -0.1171 2.4042 7 6 1.5884 -2.1412 1.6872 8 6 1.9050 -2.7618 3.0493 9 6 3.4218 -2.8452 3.2316 10 6 4.0221 -1.4398 3.1598 11 1 5.1027 -1.4991 3.2901 12 7 3.4462 -0.6062 4.2234 13 6 4.1759 -0.7850 5.4858 14 6 3.5480 0.0966 6.5671 15 6 4.2971 -0.0864 7.8619 16 1 5.1367 -0.7640 7.9090 17 6 3.9097 0.6106 8.9868 18 7 4.5638 0.4513 10.1166 19 14 2.4570 1.7821 8.9057 20 1 1.2094 1.0470 9.2349 21 1 2.6545 2.8839 9.8815 22 1 2.3522 2.3465 7.5362 23 6 3.7056 -0.8191 1.7976 24 1 -0.3633 0.5969 0.8366 25 1 -0.3633 0.4259 -0.9352 26 1 -0.3633 -1.0230 0.0988 27 1 2.0160 -2.7598 0.8982 28 1 0.5079 -2.0818 1.5568 29 1 1.4769 -3.7629 3.1008 30 1 1.4776 -2.1433 3.8386 31 1 3.8492 -3.4637 2.4424 32 1 3.6473 -3.2878 4.2019 33 1 3.4270 0.3652 3.9513 34 1 4.1214 -1.8297 5.7921 35 1 5.2191 -0.5014 5.3457 36 1 3.6021 1.1414 6.2609 37 1 2.5050 -0.1874 6.7071 38 1 4.2915 0.9419 10.9079 39 1 4.1328 0.1823 1.7465 40 1 4.1329 -1.4375 1.0083 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352860790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:19 Heat of formation + Delta-G solvation = -89.240356 kcal Electronic energy + Delta-G solvation = -20084.082343 eV Core-core repulsion = 17025.349679 eV Total energy + Delta-G solvation = -3058.732664 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.13673 -37.16526 -36.19848 -35.06326 -32.81254 -31.16958 -30.92893 -29.72417 -28.08221 -24.11569 -23.15107 -22.40878 -20.40268 -19.28399 -18.94624 -17.17201 -16.75402 -16.41953 -16.09954 -15.41088 -15.15364 -14.59846 -14.25198 -14.07534 -13.62656 -13.49924 -13.39556 -13.06399 -12.72717 -12.51284 -12.27841 -12.17644 -12.14098 -12.02873 -11.79222 -11.38601 -11.29358 -11.20091 -11.03475 -10.67673 -10.52213 -10.10708 -9.93184 -9.80865 -9.69143 -9.25033 -8.56081 -7.99363 -6.06731 -4.05167 -0.20912 2.51526 3.29997 3.37352 3.40750 3.41307 3.77275 4.21456 4.29459 4.43604 4.50696 4.60401 4.69280 4.79875 5.05363 5.08979 5.14240 5.27916 5.30416 5.33752 5.40364 5.56530 5.68766 5.77181 5.83571 6.03763 6.11564 6.16287 6.23643 6.29809 6.49705 6.75720 7.09998 7.35258 7.55771 7.71312 7.86703 8.50705 8.97504 9.55626 11.06709 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.025608 B = 0.004210 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.153379 B = 6648.915205 C = 7111.592024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.410 3.590 3 O -0.943 6.943 4 O -0.943 6.943 5 C -0.553 4.553 6 H 0.148 0.852 7 C -0.104 4.104 8 C -0.104 4.104 9 C -0.108 4.108 10 C 0.094 3.906 11 H 0.049 0.951 12 N -0.688 5.688 13 C 0.073 3.927 14 C -0.009 4.009 15 C -0.522 4.522 16 H 0.070 0.930 17 C 0.067 3.933 18 N -0.904 5.904 19 Si 0.883 3.117 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.265 1.265 23 C -0.106 4.106 24 H 0.130 0.870 25 H 0.125 0.875 26 H 0.129 0.871 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.335 0.665 34 H 0.064 0.936 35 H 0.022 0.978 36 H 0.013 0.987 37 H 0.020 0.980 38 H 0.263 0.737 39 H 0.077 0.923 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.711 -4.383 -20.629 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.595 3.405 3 O -0.940 6.940 4 O -0.940 6.940 5 C -0.663 4.663 6 H 0.165 0.835 7 C -0.142 4.142 8 C -0.142 4.142 9 C -0.146 4.146 10 C -0.017 4.017 11 H 0.067 0.933 12 N -0.319 5.319 13 C -0.055 4.055 14 C -0.047 4.047 15 C -0.560 4.560 16 H 0.088 0.912 17 C -0.134 4.134 18 N -0.543 5.543 19 Si 0.711 3.289 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.190 1.190 23 C -0.145 4.145 24 H 0.148 0.852 25 H 0.144 0.856 26 H 0.148 0.852 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.153 0.847 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.031 0.969 37 H 0.038 0.962 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.623 -4.456 -20.978 23.114 hybrid contribution -0.502 0.937 0.636 1.239 sum -9.125 -3.519 -20.341 22.570 Atomic orbital electron populations 1.30280 1.27169 1.11634 1.11597 1.08205 0.78349 0.75725 0.78225 1.93595 1.79016 1.34666 1.86764 1.93568 1.78976 1.66919 1.54571 1.30056 1.05688 1.09110 1.21496 0.83462 1.21420 0.99714 0.92177 1.00893 1.21327 0.96484 1.00230 0.96169 1.21525 0.95841 0.95530 1.01751 1.21375 0.96736 0.94215 0.89409 0.93319 1.60667 1.56360 1.11538 1.03383 1.22001 0.94362 1.01004 0.88108 1.19537 0.96709 0.94579 0.93887 1.21069 1.15968 1.26270 0.92723 0.91173 1.25013 0.96600 0.96564 0.95250 1.69917 1.40857 1.42671 1.00817 0.86728 0.83111 0.80965 0.78138 1.20308 1.21507 1.19002 1.21552 0.90653 1.02581 0.99686 0.85170 0.85590 0.85202 0.90377 0.91130 0.92287 0.89667 0.92273 0.91377 0.84695 0.91705 0.95965 0.96905 0.96191 0.92719 0.90398 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.60 10.17 101.05 1.03 -2.57 16 2 S 2.41 21.61 4.88 -107.50 -0.52 21.09 16 3 O -0.94 -12.16 18.10 -57.83 -1.05 -13.21 16 4 O -0.94 -11.28 17.91 -57.83 -1.04 -12.31 16 5 C -0.55 -4.89 2.42 -26.73 -0.06 -4.95 16 6 H 0.15 1.23 7.48 -51.93 -0.39 0.85 16 7 C -0.10 -0.83 4.95 -26.73 -0.13 -0.96 16 8 C -0.10 -1.05 5.77 -26.73 -0.15 -1.20 16 9 C -0.11 -1.23 5.53 -26.73 -0.15 -1.38 16 10 C 0.09 1.16 2.82 -67.71 -0.19 0.97 16 11 H 0.05 0.63 7.80 -51.93 -0.40 0.23 16 12 N -0.69 -10.25 4.83 -106.73 -0.51 -10.77 16 13 C 0.07 1.40 5.42 -3.83 -0.02 1.38 16 14 C -0.01 -0.22 4.30 -27.89 -0.12 -0.34 16 15 C -0.52 -14.72 9.66 -34.44 -0.33 -15.06 16 16 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 17 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 18 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 19 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 23 C -0.11 -1.10 4.59 -26.73 -0.12 -1.23 16 24 H 0.13 0.55 8.14 -51.92 -0.42 0.13 16 25 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.13 0.48 6.87 -51.92 -0.36 0.13 16 27 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16 28 H 0.07 0.38 6.55 -51.93 -0.34 0.04 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 1.01 7.60 -51.93 -0.39 0.62 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.87 7.46 -51.93 -0.39 0.48 16 33 H 0.34 4.80 8.19 -39.29 -0.32 4.48 16 34 H 0.06 1.26 7.44 -51.93 -0.39 0.88 16 35 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 36 H 0.01 0.30 7.20 -51.92 -0.37 -0.08 16 37 H 0.02 0.47 7.57 -51.93 -0.39 0.07 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 324.40 15.07 4.89 4.89 Total: -1.00 -35.30 324.40 -9.19 -44.49 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.71 Total: -0.63 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: -0.36 Total: -23.50 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.26 Total: -37.79 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -2.08 Total: -25.52 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Atomic # 16 Polarization: 21.61 SS G_CDS: -0.52 Total: 21.09 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.30 -9.19 -44.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352860790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.748 kcal (2) G-P(sol) polarization free energy of solvation -35.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds