Wall clock time and date at job start Mon Mar 30 2020 01:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42096 * 108.57914 * 2 1 4 4 O 1.42097 * 108.57862 * 228.97302 * 2 1 3 5 5 C 1.81404 * 101.92151 * 114.48674 * 2 1 3 6 6 H 1.08993 * 109.47080 * 299.99489 * 5 2 1 7 7 C 1.53002 * 109.46960 * 60.00025 * 5 2 1 8 8 C 1.53001 * 109.46637 * 179.97438 * 7 5 2 9 9 C 1.52996 * 109.47486 * 299.99742 * 8 7 5 10 10 C 1.53002 * 109.46972 * 60.00463 * 9 8 7 11 11 H 1.09002 * 109.47070 * 179.97438 * 10 9 8 12 12 N 1.46899 * 109.47394 * 59.99875 * 10 9 8 13 13 C 1.46897 * 111.00355 * 84.99974 * 12 10 9 14 14 C 1.52994 * 109.47637 * 180.02562 * 13 12 10 15 15 C 1.50698 * 109.47254 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00321 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99675 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99402 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00318 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.46772 * 90.00014 * 19 17 15 21 21 H 1.48497 * 109.47293 * 209.99992 * 19 17 15 22 22 H 1.48498 * 109.47054 * 330.00581 * 19 17 15 23 23 C 1.52997 * 109.46817 * 299.99733 * 10 9 8 24 24 H 1.09003 * 109.46909 * 305.50950 * 1 2 3 25 25 H 1.08998 * 109.47094 * 65.51488 * 1 2 3 26 26 H 1.09006 * 109.46951 * 185.51895 * 1 2 3 27 27 H 1.08996 * 109.47407 * 60.00271 * 7 5 2 28 28 H 1.08992 * 109.47063 * 299.99875 * 7 5 2 29 29 H 1.09001 * 109.47109 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.47086 * 60.00158 * 8 7 5 31 31 H 1.08996 * 109.47452 * 300.00003 * 9 8 7 32 32 H 1.09000 * 109.47054 * 180.02562 * 9 8 7 33 33 H 1.00898 * 111.00393 * 208.95929 * 12 10 9 34 34 H 1.09006 * 109.46948 * 300.00869 * 13 12 10 35 35 H 1.09006 * 109.47033 * 59.99701 * 13 12 10 36 36 H 1.09008 * 109.47073 * 300.00564 * 14 13 12 37 37 H 1.08997 * 109.47237 * 59.99919 * 14 13 12 38 38 H 0.96999 * 119.99380 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.47533 * 179.97438 * 23 10 9 40 40 H 1.08996 * 109.47853 * 300.00202 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7357 1.6153 6 1 1.7611 -0.1171 2.4042 7 6 1.5884 -2.1412 1.6872 8 6 1.9050 -2.7618 3.0493 9 6 3.4218 -2.8452 3.2316 10 6 4.0221 -1.4398 3.1598 11 1 5.1027 -1.4991 3.2901 12 7 3.4462 -0.6062 4.2234 13 6 4.1759 -0.7850 5.4858 14 6 3.5480 0.0966 6.5671 15 6 4.2971 -0.0864 7.8619 16 1 5.1367 -0.7640 7.9090 17 6 3.9097 0.6106 8.9868 18 7 4.5638 0.4513 10.1166 19 14 2.4570 1.7821 8.9057 20 1 1.2094 1.0470 9.2349 21 1 2.6545 2.8839 9.8815 22 1 2.3522 2.3465 7.5362 23 6 3.7056 -0.8191 1.7976 24 1 -0.3633 0.5969 0.8366 25 1 -0.3633 0.4259 -0.9352 26 1 -0.3633 -1.0230 0.0988 27 1 2.0160 -2.7598 0.8982 28 1 0.5079 -2.0818 1.5568 29 1 1.4769 -3.7629 3.1008 30 1 1.4776 -2.1433 3.8386 31 1 3.8492 -3.4637 2.4424 32 1 3.6473 -3.2878 4.2019 33 1 3.4270 0.3652 3.9513 34 1 4.1214 -1.8297 5.7921 35 1 5.2191 -0.5014 5.3457 36 1 3.6021 1.1414 6.2609 37 1 2.5050 -0.1874 6.7071 38 1 4.2915 0.9419 10.9079 39 1 4.1328 0.1823 1.7465 40 1 4.1329 -1.4375 1.0083 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352860790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:19 Heat of formation + Delta-G solvation = -116.262149 kcal Electronic energy + Delta-G solvation = -20085.254096 eV Core-core repulsion = 17025.349679 eV Total energy + Delta-G solvation = -3059.904417 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.06381 -37.97311 -36.99906 -36.47088 -34.70691 -32.34400 -31.97099 -30.45448 -29.32135 -25.84008 -24.03845 -23.23977 -22.18980 -20.22227 -19.67822 -18.88194 -17.92233 -17.24451 -16.83225 -16.50847 -16.33477 -15.94321 -15.52876 -15.25764 -14.82036 -14.62892 -14.24413 -13.93521 -13.82734 -13.54818 -13.24272 -13.17677 -13.13579 -13.04166 -12.97423 -12.82357 -12.55124 -12.10809 -12.03546 -11.84365 -11.73920 -11.61121 -11.40203 -11.36782 -11.13931 -10.76638 -10.66479 -9.27952 -8.29828 -6.34534 -0.86518 1.37542 1.39489 1.51788 1.89951 2.36995 2.75547 3.06182 3.12412 3.25414 3.58716 3.67237 3.90776 4.14924 4.19360 4.27692 4.34408 4.37216 4.46219 4.54492 4.56561 4.58301 4.75811 4.91382 4.93896 4.97814 5.04544 5.11903 5.19025 5.32753 5.35481 5.37599 5.51527 5.63105 5.69546 6.17086 6.26509 6.55777 6.74932 7.30511 8.87111 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.025608 B = 0.004210 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.153379 B = 6648.915205 C = 7111.592024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.640 4.640 2 S 2.417 3.583 3 O -0.990 6.990 4 O -0.979 6.979 5 C -0.551 4.551 6 H 0.154 0.846 7 C -0.105 4.105 8 C -0.103 4.103 9 C -0.111 4.111 10 C 0.092 3.908 11 H 0.038 0.962 12 N -0.677 5.677 13 C 0.088 3.912 14 C -0.003 4.003 15 C -0.535 4.535 16 H 0.028 0.972 17 C 0.004 3.996 18 N -0.953 5.953 19 Si 0.956 3.044 20 H -0.266 1.266 21 H -0.287 1.287 22 H -0.245 1.245 23 C -0.110 4.110 24 H 0.150 0.850 25 H 0.138 0.862 26 H 0.156 0.844 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.341 0.659 34 H 0.055 0.945 35 H 0.010 0.990 36 H 0.018 0.982 37 H 0.025 0.975 38 H 0.266 0.734 39 H 0.074 0.926 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.797 -4.049 -22.470 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.792 4.792 2 S 2.606 3.394 3 O -0.988 6.988 4 O -0.976 6.976 5 C -0.661 4.661 6 H 0.172 0.828 7 C -0.143 4.143 8 C -0.141 4.141 9 C -0.149 4.149 10 C -0.019 4.019 11 H 0.056 0.944 12 N -0.309 5.309 13 C -0.041 4.041 14 C -0.041 4.041 15 C -0.573 4.573 16 H 0.047 0.953 17 C -0.193 4.193 18 N -0.593 5.593 19 Si 0.780 3.220 20 H -0.191 1.191 21 H -0.212 1.212 22 H -0.168 1.168 23 C -0.148 4.148 24 H 0.168 0.832 25 H 0.156 0.844 26 H 0.175 0.825 27 H 0.103 0.897 28 H 0.124 0.876 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.159 0.841 34 H 0.074 0.926 35 H 0.028 0.972 36 H 0.037 0.963 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.663 -4.132 -22.851 25.986 hybrid contribution 0.503 0.741 1.219 1.513 sum -11.160 -3.391 -21.632 24.576 Atomic orbital electron populations 1.30115 1.21758 1.14073 1.13296 1.07735 0.80226 0.74086 0.77390 1.93537 1.81248 1.36771 1.87213 1.93521 1.80980 1.67298 1.55786 1.30029 1.04387 1.10054 1.21647 0.82786 1.21522 1.02020 0.91207 0.99596 1.21304 0.94956 1.00931 0.96957 1.21559 0.97405 0.94750 1.01215 1.21447 0.96160 0.94643 0.89666 0.94426 1.60583 1.55485 1.12321 1.02546 1.21638 0.93766 0.99472 0.89218 1.19422 0.96351 0.95624 0.92666 1.21436 1.15269 1.25299 0.95318 0.95347 1.26035 0.99981 0.98634 0.94620 1.70078 1.43123 1.44289 1.01857 0.85568 0.78983 0.78357 0.79139 1.19059 1.21248 1.16828 1.21551 0.92443 1.02430 0.98420 0.83157 0.84362 0.82530 0.89740 0.87602 0.90970 0.91364 0.90673 0.93475 0.84091 0.92632 0.97169 0.96339 0.95633 0.92487 0.90701 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -4.08 10.17 113.37 1.15 -2.93 16 2 S 2.42 38.11 4.88 -56.49 -0.28 37.84 16 3 O -0.99 -24.60 18.10 -127.37 -2.30 -26.90 16 4 O -0.98 -21.82 17.91 -127.37 -2.28 -24.11 16 5 C -0.55 -8.36 2.42 30.60 0.07 -8.29 16 6 H 0.15 2.14 7.48 -2.39 -0.02 2.12 16 7 C -0.11 -1.32 4.95 30.60 0.15 -1.17 16 8 C -0.10 -1.83 5.77 30.59 0.18 -1.66 16 9 C -0.11 -2.42 5.53 30.59 0.17 -2.25 16 10 C 0.09 2.21 2.82 44.92 0.13 2.33 16 11 H 0.04 0.99 7.80 -2.39 -0.02 0.97 16 12 N -0.68 -19.61 4.83 -491.57 -2.37 -21.98 16 13 C 0.09 3.39 5.42 86.30 0.47 3.86 16 14 C 0.00 -0.13 4.30 29.85 0.13 0.00 16 15 C -0.53 -30.94 9.66 25.60 0.25 -30.69 16 16 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 17 C 0.00 0.23 5.47 84.66 0.46 0.70 16 18 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 19 Si 0.96 44.11 27.47 68.60 1.88 45.99 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 21 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.24 -10.40 6.54 99.48 0.65 -9.75 16 23 C -0.11 -2.15 4.59 30.60 0.14 -2.01 16 24 H 0.15 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.16 0.25 6.87 -2.39 -0.02 0.23 16 27 H 0.08 1.00 8.06 -2.39 -0.02 0.98 16 28 H 0.11 0.60 6.55 -2.39 -0.02 0.58 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.47 7.60 -2.38 -0.02 1.45 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.21 7.46 -2.39 -0.02 1.19 16 33 H 0.34 9.30 8.19 -89.70 -0.73 8.57 16 34 H 0.06 2.22 7.44 -2.38 -0.02 2.21 16 35 H 0.01 0.41 8.06 -2.38 -0.02 0.39 16 36 H 0.02 0.83 7.20 -2.38 -0.02 0.81 16 37 H 0.03 1.15 7.57 -2.39 -0.02 1.13 16 38 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 39 H 0.07 1.50 8.12 -2.39 -0.02 1.48 16 40 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -78.62 324.40 -1.53 -80.15 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 0.22 Total: 10.90 kcal Atomic # 6 Polarization: -45.41 SS G_CDS: 3.30 Total: -42.11 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -2.07 Total: -81.76 kcal Atomic # 8 Polarization: -46.42 SS G_CDS: -4.59 Total: -51.01 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 45.99 kcal Atomic # 16 Polarization: 38.11 SS G_CDS: -0.28 Total: 37.84 kcal Total: -78.62 -1.53 -80.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352860790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.110 kcal (2) G-P(sol) polarization free energy of solvation -78.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds