Wall clock time and date at job start Mon Mar 30 2020 01:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42100 * 108.57996 * 2 1 4 4 O 1.42100 * 108.57483 * 228.97692 * 2 1 3 5 5 C 1.81399 * 101.92209 * 114.49179 * 2 1 3 6 6 C 1.52995 * 109.47038 * 179.97438 * 5 2 1 7 7 C 1.52997 * 109.47173 * 294.99784 * 6 5 2 8 8 C 1.53003 * 109.47358 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.46705 * 60.00173 * 8 7 6 10 10 N 1.46902 * 109.46822 * 180.02562 * 9 8 7 11 11 C 1.46898 * 110.99790 * 274.99716 * 10 9 8 12 12 C 1.50701 * 109.47018 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99960 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00365 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00392 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99893 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46710 * 90.00581 * 16 14 12 18 18 H 1.48494 * 109.47387 * 210.00645 * 16 14 12 19 19 H 1.48504 * 109.46981 * 330.01087 * 16 14 12 20 20 C 1.52997 * 109.47071 * 300.00003 * 9 8 7 21 21 C 1.52995 * 109.47173 * 60.00357 * 20 9 8 22 22 H 1.08998 * 109.46716 * 305.51407 * 1 2 3 23 23 H 1.09006 * 109.46801 * 65.50576 * 1 2 3 24 24 H 1.08993 * 109.47055 * 185.50649 * 1 2 3 25 25 H 1.08999 * 109.46744 * 299.99771 * 5 2 1 26 26 H 1.08998 * 109.46870 * 59.99867 * 5 2 1 27 27 H 1.08997 * 109.47236 * 54.99926 * 6 5 2 28 28 H 1.09005 * 109.47325 * 300.00354 * 7 6 5 29 29 H 1.09003 * 109.47024 * 60.00338 * 7 6 5 30 30 H 1.08997 * 109.47176 * 300.00219 * 8 7 6 31 31 H 1.09001 * 109.47436 * 179.97438 * 8 7 6 32 32 H 1.09005 * 109.47049 * 60.00175 * 9 8 7 33 33 H 1.00908 * 110.99751 * 151.04778 * 10 9 8 34 34 H 1.08996 * 109.47314 * 300.00156 * 11 10 9 35 35 H 1.09002 * 109.47509 * 60.00505 * 11 10 9 36 36 H 0.96997 * 119.99829 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.47156 * 300.00166 * 20 9 8 38 38 H 1.09003 * 109.47024 * 180.02562 * 20 9 8 39 39 H 1.08998 * 109.47350 * 179.97438 * 21 20 9 40 40 H 1.08997 * 109.47236 * 59.99858 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7358 1.6152 6 6 3.7055 -0.8197 1.7978 7 6 4.2906 -1.7870 0.7669 8 6 5.8074 -1.8704 0.9490 9 6 6.1248 -2.3741 2.3585 10 7 7.5811 -2.4536 2.5337 11 6 8.1032 -3.7303 2.0282 12 6 9.5966 -3.7756 2.2250 13 1 10.1069 -2.9394 2.6797 14 6 10.3116 -4.8840 1.8237 15 7 11.6150 -4.9233 1.9950 16 14 9.4291 -6.3300 1.0365 17 1 9.3788 -6.1376 -0.4352 18 1 10.1601 -7.5847 1.3469 19 1 8.0466 -6.4172 1.5718 20 6 5.5397 -1.4068 3.3895 21 6 4.0229 -1.3233 3.2073 22 1 -0.3633 0.5970 0.8365 23 1 -0.3633 0.4261 -0.9352 24 1 -0.3633 -1.0229 0.0986 25 1 1.7611 -0.1172 2.4042 26 1 1.7611 -1.7370 1.6663 27 1 4.1435 0.1686 1.6583 28 1 3.8525 -2.7754 0.9063 29 1 4.0649 -1.4280 -0.2373 30 1 6.2451 -0.8820 0.8092 31 1 6.2242 -2.5599 0.2149 32 1 5.6871 -3.3625 2.4983 33 1 7.8372 -2.3154 3.4999 34 1 7.6402 -4.5532 2.5726 35 1 7.8734 -3.8221 0.9666 36 1 12.1179 -5.7033 1.7129 37 1 5.9773 -0.4184 3.2497 38 1 5.7662 -1.7653 4.3936 39 1 3.6060 -0.6346 3.9420 40 1 3.5853 -2.3117 3.3471 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353229827.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:00 Heat of formation + Delta-G solvation = -87.761408 kcal Electronic energy + Delta-G solvation = -19817.449016 eV Core-core repulsion = 16758.780484 eV Total energy + Delta-G solvation = -3058.668532 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.99505 -37.23069 -36.28311 -35.22996 -32.66838 -31.06073 -30.69610 -29.95923 -27.48414 -25.08436 -22.78146 -21.49335 -20.54335 -19.68583 -19.09964 -17.07292 -16.71945 -16.38572 -16.34067 -15.12487 -14.81720 -14.54480 -14.36522 -13.88885 -13.73516 -13.62358 -13.51479 -13.08964 -12.65465 -12.50658 -12.47112 -12.22322 -11.98590 -11.91887 -11.80040 -11.35265 -11.10475 -11.06738 -10.93726 -10.81289 -10.67276 -10.33675 -10.08111 -9.74693 -9.69149 -9.22517 -8.56254 -7.42738 -6.03454 -4.01056 -0.33042 2.44659 3.31138 3.33221 3.37882 3.40366 3.67103 4.21423 4.29870 4.37704 4.44388 4.59603 4.70003 4.87957 4.98349 5.16873 5.21772 5.29650 5.37018 5.37516 5.49372 5.59220 5.64811 5.68699 5.95124 5.99692 6.12284 6.23118 6.32154 6.41592 6.57803 6.70916 6.86005 7.06272 7.65788 7.95438 8.39431 8.68706 9.04937 9.58876 11.09931 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.033912 B = 0.003661 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.459542 B = 7645.504085 C = 8014.835862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.661 4.661 2 S 2.417 3.583 3 O -0.939 6.939 4 O -0.932 6.932 5 C -0.603 4.603 6 C -0.075 4.075 7 C -0.145 4.145 8 C -0.105 4.105 9 C 0.083 3.917 10 N -0.678 5.678 11 C 0.164 3.836 12 C -0.515 4.515 13 H 0.079 0.921 14 C 0.068 3.932 15 N -0.901 5.901 16 Si 0.877 3.123 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.268 1.268 20 C -0.122 4.122 21 C -0.100 4.100 22 H 0.126 0.874 23 H 0.127 0.873 24 H 0.127 0.873 25 H 0.131 0.869 26 H 0.132 0.868 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.034 0.966 33 H 0.335 0.665 34 H -0.018 1.018 35 H 0.022 0.978 36 H 0.263 0.737 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.154 8.828 0.272 27.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.599 3.401 3 O -0.936 6.936 4 O -0.929 6.929 5 C -0.733 4.733 6 C -0.094 4.094 7 C -0.183 4.183 8 C -0.144 4.144 9 C -0.028 4.028 10 N -0.308 5.308 11 C 0.037 3.963 12 C -0.553 4.553 13 H 0.097 0.903 14 C -0.134 4.134 15 N -0.540 5.540 16 Si 0.705 3.295 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.193 1.193 20 C -0.160 4.160 21 C -0.140 4.140 22 H 0.145 0.855 23 H 0.146 0.854 24 H 0.146 0.854 25 H 0.149 0.851 26 H 0.150 0.850 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.153 0.847 34 H 0.000 1.000 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -25.290 9.351 -1.014 26.982 hybrid contribution -1.344 -1.820 0.897 2.434 sum -26.634 7.531 -0.118 27.679 Atomic orbital electron populations 1.30318 1.27626 1.11404 1.11602 1.08008 0.77894 0.75994 0.78204 1.93607 1.78804 1.34580 1.86651 1.93606 1.78160 1.66736 1.54396 1.30380 1.06659 1.13739 1.22483 1.20959 0.88884 1.01479 0.98117 1.22121 0.97470 0.99586 0.99130 1.21490 0.93179 1.02499 0.97188 1.21524 0.90018 0.96556 0.94665 1.60480 1.08002 1.37505 1.24851 1.20031 0.96131 0.85211 0.94971 1.21084 0.90047 1.03699 1.40501 0.90318 1.24912 0.94724 0.98221 0.95523 1.69903 1.06076 1.30048 1.48013 0.86827 0.80111 0.82362 0.80246 1.20078 1.21247 1.19312 1.21735 0.94388 1.01000 0.98856 1.21488 0.96705 1.01181 0.94581 0.85541 0.85398 0.85425 0.85089 0.84965 0.89389 0.91383 0.89525 0.91179 0.91414 0.94846 0.84701 1.00001 0.95953 0.92681 0.90927 0.91914 0.91812 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.41 10.62 101.05 1.07 -1.34 16 2 S 2.42 18.36 5.15 -107.50 -0.55 17.81 16 3 O -0.94 -10.86 18.10 -57.83 -1.05 -11.91 16 4 O -0.93 -10.73 15.46 -57.83 -0.89 -11.62 16 5 C -0.60 -3.74 5.26 37.15 0.20 -3.54 16 6 C -0.07 -0.76 2.19 -90.62 -0.20 -0.96 16 7 C -0.15 -1.86 4.84 -26.73 -0.13 -1.98 16 8 C -0.11 -1.69 5.43 -26.73 -0.15 -1.84 16 9 C 0.08 1.38 2.49 -67.71 -0.17 1.21 16 10 N -0.68 -14.16 6.30 -107.99 -0.68 -14.84 16 11 C 0.16 4.07 4.31 -4.98 -0.02 4.05 16 12 C -0.52 -15.00 9.87 -34.44 -0.34 -15.34 16 13 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 14 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 15 N -0.90 -28.11 13.96 55.43 0.77 -27.34 16 16 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 20 C -0.12 -1.59 5.19 -26.74 -0.14 -1.73 16 21 C -0.10 -1.02 5.20 -26.73 -0.14 -1.16 16 22 H 0.13 0.22 8.14 -51.92 -0.42 -0.20 16 23 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 24 H 0.13 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 26 H 0.13 0.55 8.14 -51.92 -0.42 0.13 16 27 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.09 1.14 5.40 -51.93 -0.28 0.86 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 1.20 7.45 -51.93 -0.39 0.81 16 32 H 0.03 0.58 7.80 -51.93 -0.41 0.18 16 33 H 0.34 6.73 8.34 -39.29 -0.33 6.40 16 34 H -0.02 -0.44 7.11 -51.93 -0.37 -0.81 16 35 H 0.02 0.57 6.86 -51.93 -0.36 0.21 16 36 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.79 8.12 -51.93 -0.42 0.36 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 325.08 15.07 4.90 4.90 Total: -1.00 -36.87 325.08 -9.07 -45.93 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.79 Total: 0.47 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -0.11 Total: -20.72 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.09 Total: -42.18 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -1.94 Total: -23.53 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Atomic # 16 Polarization: 18.36 SS G_CDS: -0.55 Total: 17.81 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.87 -9.07 -45.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353229827.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.828 kcal (2) G-P(sol) polarization free energy of solvation -36.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds