Wall clock time and date at job start Mon Mar 30 2020 01:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42100 * 108.57996 * 2 1 4 4 O 1.42100 * 108.57483 * 228.97692 * 2 1 3 5 5 C 1.81399 * 101.92209 * 114.49179 * 2 1 3 6 6 C 1.52995 * 109.47038 * 179.97438 * 5 2 1 7 7 C 1.52997 * 109.47173 * 294.99784 * 6 5 2 8 8 C 1.53003 * 109.47358 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.46705 * 60.00173 * 8 7 6 10 10 N 1.46902 * 109.46822 * 180.02562 * 9 8 7 11 11 C 1.46898 * 110.99790 * 274.99716 * 10 9 8 12 12 C 1.50701 * 109.47018 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99960 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00365 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00392 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99893 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.46710 * 90.00581 * 16 14 12 18 18 H 1.48494 * 109.47387 * 210.00645 * 16 14 12 19 19 H 1.48504 * 109.46981 * 330.01087 * 16 14 12 20 20 C 1.52997 * 109.47071 * 300.00003 * 9 8 7 21 21 C 1.52995 * 109.47173 * 60.00357 * 20 9 8 22 22 H 1.08998 * 109.46716 * 305.51407 * 1 2 3 23 23 H 1.09006 * 109.46801 * 65.50576 * 1 2 3 24 24 H 1.08993 * 109.47055 * 185.50649 * 1 2 3 25 25 H 1.08999 * 109.46744 * 299.99771 * 5 2 1 26 26 H 1.08998 * 109.46870 * 59.99867 * 5 2 1 27 27 H 1.08997 * 109.47236 * 54.99926 * 6 5 2 28 28 H 1.09005 * 109.47325 * 300.00354 * 7 6 5 29 29 H 1.09003 * 109.47024 * 60.00338 * 7 6 5 30 30 H 1.08997 * 109.47176 * 300.00219 * 8 7 6 31 31 H 1.09001 * 109.47436 * 179.97438 * 8 7 6 32 32 H 1.09005 * 109.47049 * 60.00175 * 9 8 7 33 33 H 1.00908 * 110.99751 * 151.04778 * 10 9 8 34 34 H 1.08996 * 109.47314 * 300.00156 * 11 10 9 35 35 H 1.09002 * 109.47509 * 60.00505 * 11 10 9 36 36 H 0.96997 * 119.99829 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.47156 * 300.00166 * 20 9 8 38 38 H 1.09003 * 109.47024 * 180.02562 * 20 9 8 39 39 H 1.08998 * 109.47350 * 179.97438 * 21 20 9 40 40 H 1.08997 * 109.47236 * 59.99858 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7358 1.6152 6 6 3.7055 -0.8197 1.7978 7 6 4.2906 -1.7870 0.7669 8 6 5.8074 -1.8704 0.9490 9 6 6.1248 -2.3741 2.3585 10 7 7.5811 -2.4536 2.5337 11 6 8.1032 -3.7303 2.0282 12 6 9.5966 -3.7756 2.2250 13 1 10.1069 -2.9394 2.6797 14 6 10.3116 -4.8840 1.8237 15 7 11.6150 -4.9233 1.9950 16 14 9.4291 -6.3300 1.0365 17 1 9.3788 -6.1376 -0.4352 18 1 10.1601 -7.5847 1.3469 19 1 8.0466 -6.4172 1.5718 20 6 5.5397 -1.4068 3.3895 21 6 4.0229 -1.3233 3.2073 22 1 -0.3633 0.5970 0.8365 23 1 -0.3633 0.4261 -0.9352 24 1 -0.3633 -1.0229 0.0986 25 1 1.7611 -0.1172 2.4042 26 1 1.7611 -1.7370 1.6663 27 1 4.1435 0.1686 1.6583 28 1 3.8525 -2.7754 0.9063 29 1 4.0649 -1.4280 -0.2373 30 1 6.2451 -0.8820 0.8092 31 1 6.2242 -2.5599 0.2149 32 1 5.6871 -3.3625 2.4983 33 1 7.8372 -2.3154 3.4999 34 1 7.6402 -4.5532 2.5726 35 1 7.8734 -3.8221 0.9666 36 1 12.1179 -5.7033 1.7129 37 1 5.9773 -0.4184 3.2497 38 1 5.7662 -1.7653 4.3936 39 1 3.6060 -0.6346 3.9420 40 1 3.5853 -2.3117 3.3471 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353229827.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:00 Heat of formation + Delta-G solvation = -117.378812 kcal Electronic energy + Delta-G solvation = -19818.733323 eV Core-core repulsion = 16758.780484 eV Total energy + Delta-G solvation = -3059.952839 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.07833 -37.91696 -37.02967 -36.63952 -34.66623 -32.42144 -31.72661 -30.36635 -29.09133 -26.34888 -23.99312 -23.09326 -21.87305 -20.76213 -19.68980 -18.99088 -17.60345 -17.02681 -16.95072 -16.71590 -16.21163 -15.93199 -15.50481 -15.19042 -14.81237 -14.56153 -14.11110 -14.03499 -13.87205 -13.71812 -13.53325 -13.32434 -13.09619 -12.93197 -12.79799 -12.70352 -12.44901 -12.06501 -12.01164 -11.98675 -11.85581 -11.75371 -11.55066 -11.44098 -11.02476 -10.82780 -10.69611 -9.13270 -8.32737 -6.37115 -0.83655 1.32158 1.33746 1.44655 1.98606 2.31473 2.81875 3.01090 3.18723 3.35994 3.66872 3.73694 3.80989 4.07682 4.14553 4.28769 4.30128 4.42821 4.45967 4.50001 4.57423 4.63010 4.71870 4.81775 4.90227 4.98552 5.01633 5.11840 5.16074 5.18122 5.27474 5.31588 5.38508 5.48095 5.57244 5.98672 6.57624 6.65987 6.78385 7.28156 8.84130 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.033912 B = 0.003661 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.459542 B = 7645.504085 C = 8014.835862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.637 4.637 2 S 2.405 3.595 3 O -0.992 6.992 4 O -0.984 6.984 5 C -0.590 4.590 6 C -0.082 4.082 7 C -0.143 4.143 8 C -0.108 4.108 9 C 0.081 3.919 10 N -0.690 5.690 11 C 0.178 3.822 12 C -0.529 4.529 13 H 0.037 0.963 14 C 0.008 3.992 15 N -0.947 5.947 16 Si 0.951 3.049 17 H -0.268 1.268 18 H -0.277 1.277 19 H -0.251 1.251 20 C -0.119 4.119 21 C -0.094 4.094 22 H 0.155 0.845 23 H 0.131 0.869 24 H 0.154 0.846 25 H 0.170 0.830 26 H 0.163 0.837 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.040 0.960 32 H 0.033 0.967 33 H 0.338 0.662 34 H -0.014 1.014 35 H 0.018 0.982 36 H 0.268 0.732 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.362 8.093 1.212 31.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.789 4.789 2 S 2.594 3.406 3 O -0.990 6.990 4 O -0.981 6.981 5 C -0.720 4.720 6 C -0.101 4.101 7 C -0.181 4.181 8 C -0.146 4.146 9 C -0.029 4.029 10 N -0.321 5.321 11 C 0.049 3.951 12 C -0.567 4.567 13 H 0.055 0.945 14 C -0.190 4.190 15 N -0.587 5.587 16 Si 0.774 3.226 17 H -0.193 1.193 18 H -0.202 1.202 19 H -0.175 1.175 20 C -0.157 4.157 21 C -0.133 4.133 22 H 0.173 0.827 23 H 0.150 0.850 24 H 0.172 0.828 25 H 0.188 0.812 26 H 0.181 0.819 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.156 0.844 34 H 0.003 0.997 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -29.477 8.646 -0.085 30.719 hybrid contribution -0.022 -1.507 0.649 1.641 sum -29.499 7.139 0.564 30.356 Atomic orbital electron populations 1.30082 1.21778 1.13893 1.13194 1.07884 0.80002 0.74409 0.78313 1.93543 1.81114 1.36866 1.87443 1.93541 1.80471 1.67328 1.56796 1.30241 1.03683 1.16176 1.21924 1.20936 0.91813 1.00035 0.97318 1.22094 0.94825 1.01141 1.00014 1.21490 0.95941 1.00935 0.96245 1.21661 0.87276 0.97717 0.96199 1.60381 1.11271 1.35404 1.25044 1.19741 0.93376 0.87154 0.94843 1.21363 0.92473 1.02653 1.40236 0.94458 1.25887 0.95478 1.01590 0.96019 1.70052 1.07968 1.31376 1.49337 0.85667 0.79480 0.78199 0.79292 1.19299 1.20202 1.17526 1.21719 0.96834 0.99386 0.97752 1.21494 0.94028 1.02795 0.95013 0.82680 0.85047 0.82790 0.81218 0.81938 0.90431 0.90274 0.90320 0.92447 0.94098 0.94883 0.84440 0.99672 0.96378 0.92284 0.91565 0.91192 0.88775 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -1.92 10.62 113.37 1.20 -0.71 16 2 S 2.40 32.35 5.15 -56.49 -0.29 32.06 16 3 O -0.99 -22.70 18.10 -127.37 -2.31 -25.00 16 4 O -0.98 -22.46 15.46 -127.37 -1.97 -24.43 16 5 C -0.59 -4.84 5.26 71.98 0.38 -4.46 16 6 C -0.08 -1.47 2.19 -10.80 -0.02 -1.49 16 7 C -0.14 -3.54 4.84 30.59 0.15 -3.39 16 8 C -0.11 -3.54 5.43 30.60 0.17 -3.37 16 9 C 0.08 2.68 2.49 44.92 0.11 2.79 16 10 N -0.69 -29.42 6.30 -495.57 -3.12 -32.54 16 11 C 0.18 8.90 4.31 85.56 0.37 9.27 16 12 C -0.53 -31.86 9.87 25.60 0.25 -31.61 16 13 H 0.04 2.48 8.06 -2.91 -0.02 2.46 16 14 C 0.01 0.47 5.47 84.65 0.46 0.93 16 15 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 16 Si 0.95 45.52 27.47 68.60 1.88 47.40 16 17 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 19 H -0.25 -11.27 6.54 99.48 0.65 -10.62 16 20 C -0.12 -2.91 5.19 30.59 0.16 -2.75 16 21 C -0.09 -1.56 5.20 30.59 0.16 -1.40 16 22 H 0.15 -0.32 8.14 -2.39 -0.02 -0.34 16 23 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 24 H 0.15 -0.24 8.14 -2.39 -0.02 -0.26 16 25 H 0.17 0.15 8.14 -2.39 -0.02 0.13 16 26 H 0.16 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.08 2.11 5.40 -2.39 -0.01 2.10 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.04 1.51 7.45 -2.39 -0.02 1.49 16 32 H 0.03 1.11 7.80 -2.38 -0.02 1.09 16 33 H 0.34 13.87 8.34 -89.69 -0.75 13.13 16 34 H -0.01 -0.70 7.11 -2.39 -0.02 -0.72 16 35 H 0.02 0.93 6.86 -2.39 -0.02 0.91 16 36 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 37 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.07 1.61 8.12 -2.39 -0.02 1.59 16 39 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -84.93 325.08 -1.91 -86.83 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.21 Total: 12.20 kcal Atomic # 6 Polarization: -39.58 SS G_CDS: 3.39 Total: -36.19 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -2.82 Total: -92.86 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -4.27 Total: -49.43 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.40 kcal Atomic # 16 Polarization: 32.35 SS G_CDS: -0.29 Total: 32.06 kcal Total: -84.93 -1.91 -86.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353229827.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.546 kcal (2) G-P(sol) polarization free energy of solvation -84.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds