Wall clock time and date at job start Mon Mar 30 2020 01:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86797 * 119.99800 * 2 1 4 4 H 1.48510 * 109.47270 * 240.00350 * 3 2 1 5 5 H 1.48498 * 109.47520 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47261 * 120.00259 * 3 2 1 7 7 C 1.40137 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.41728 * 120.00411 * 359.97438 * 7 2 1 10 10 O 1.21789 * 119.99759 * 0.02562 * 9 7 2 11 11 N 1.34774 * 120.00214 * 179.97438 * 9 7 2 12 12 C 1.39481 * 119.99901 * 185.42264 * 11 9 7 13 13 C 1.39137 * 120.53788 * 335.83984 * 12 11 9 14 14 C 1.38658 * 118.43020 * 180.24534 * 13 12 11 15 15 C 1.38219 * 119.42330 * 359.74656 * 14 13 12 16 16 N 1.31987 * 121.05198 * 359.97438 * 15 14 13 17 17 C 1.32313 * 121.70772 * 0.02666 * 16 15 14 18 18 N 1.38943 * 119.77128 * 179.97438 * 17 16 15 19 19 C 1.46848 * 110.99886 * 333.25684 * 18 17 16 20 20 C 1.53037 * 109.52353 * 185.83999 * 19 18 17 21 21 C 1.53118 * 109.27608 * 300.82192 * 20 19 18 22 22 C 1.53115 * 109.21504 * 57.62459 * 21 20 19 23 23 C 1.46844 * 111.00113 * 97.46593 * 18 17 16 24 24 H 0.96996 * 120.00146 * 359.97438 * 1 2 3 25 25 H 0.96996 * 119.99937 * 5.42864 * 11 9 7 26 26 H 1.07997 * 120.78276 * 0.02562 * 13 12 11 27 27 H 1.07999 * 120.28989 * 179.72936 * 14 13 12 28 28 H 1.07995 * 119.47094 * 180.02562 * 15 14 13 29 29 H 1.08996 * 109.46102 * 65.82659 * 19 18 17 30 30 H 1.09002 * 109.45324 * 305.84896 * 19 18 17 31 31 H 1.09000 * 109.50481 * 180.87753 * 20 19 18 32 32 H 1.09000 * 109.50252 * 60.75846 * 20 19 18 33 33 H 1.09008 * 109.51828 * 177.55935 * 21 20 19 34 34 H 1.08998 * 109.52500 * 297.68038 * 21 20 19 35 35 H 1.08998 * 109.50696 * 62.31631 * 22 21 20 36 36 H 1.09007 * 109.50098 * 182.43775 * 22 21 20 37 37 H 1.08997 * 109.46641 * 294.17684 * 23 18 17 38 38 H 1.09000 * 109.46108 * 54.15468 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.0940 1.6965 -1.2126 5 1 1.2753 2.7465 0.0006 6 1 3.0940 1.6964 1.2124 7 6 2.0070 -1.2136 -0.0005 8 1 3.0870 -1.2136 -0.0010 9 6 1.2984 -2.4411 -0.0005 10 8 0.0805 -2.4411 -0.0005 11 7 1.9723 -3.6082 -0.0016 12 6 1.2795 -4.8134 -0.1157 13 6 -0.0562 -4.8998 0.2640 14 6 -0.7011 -6.1206 0.1368 15 6 -0.0072 -7.2062 -0.3638 16 7 1.2583 -7.0985 -0.7228 17 6 1.9155 -5.9548 -0.6199 18 7 3.2475 -5.8870 -1.0093 19 6 3.8977 -7.1983 -0.8910 20 6 5.3925 -7.0566 -1.1869 21 6 5.5772 -6.5002 -2.6014 22 6 4.8498 -5.1575 -2.7138 23 6 3.3710 -5.3541 -2.3721 24 1 -0.4850 0.8400 0.0004 25 1 2.9391 -3.6101 0.0771 26 1 -0.5774 -4.0371 0.6520 27 1 -1.7364 -6.2226 0.4267 28 1 -0.5089 -8.1573 -0.4636 29 1 3.4505 -7.8910 -1.6039 30 1 3.7625 -7.5806 0.1208 31 1 5.8721 -8.0327 -1.1143 32 1 5.8432 -6.3746 -0.4659 33 1 6.6393 -6.3568 -2.8006 34 1 5.1623 -7.2011 -3.3257 35 1 5.2916 -4.4448 -2.0175 36 1 4.9418 -4.7779 -3.7314 37 1 2.9262 -6.0555 -3.0780 38 1 2.8533 -4.3971 -2.4361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355653369.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:36 Heat of formation + Delta-G solvation = 3.348469 kcal Electronic energy + Delta-G solvation = -21571.538970 eV Core-core repulsion = 18413.670058 eV Total energy + Delta-G solvation = -3157.868911 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.32910 -38.23904 -37.37988 -33.89938 -33.42100 -32.44718 -30.77557 -30.54040 -28.69295 -26.48351 -24.44235 -23.34351 -22.40066 -21.54122 -19.99886 -19.51154 -17.74935 -17.07165 -16.11307 -15.87056 -15.21524 -14.88593 -14.60395 -14.30912 -14.03379 -13.85477 -13.38947 -13.13362 -13.03083 -12.69347 -12.47650 -12.19518 -12.00221 -11.63074 -11.38300 -11.15059 -11.08384 -10.73357 -10.69522 -10.41749 -10.36270 -10.34412 -9.80849 -9.34009 -9.00989 -8.97578 -8.23981 -7.61572 -6.97542 -6.41873 -4.95857 1.74188 2.06631 3.04217 3.09851 3.11564 3.92848 3.94112 4.24992 4.52289 4.61384 4.88763 4.97031 5.01008 5.13594 5.39213 5.54577 5.56956 5.63079 5.66323 5.72681 5.77065 5.87159 5.92368 5.99553 6.05742 6.09696 6.15038 6.23784 6.33126 6.45588 6.73228 6.89770 7.14260 7.17835 7.29145 7.60554 7.82211 7.99957 8.15101 8.55156 8.74753 9.24201 10.31379 10.50971 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016983 B = 0.006175 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.312087 B = 4533.436439 C = 5933.353639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.089 3.911 3 Si 0.913 3.087 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.534 4.534 8 H 0.071 0.929 9 C 0.541 3.459 10 O -0.568 6.568 11 N -0.678 5.678 12 C 0.168 3.832 13 C -0.108 4.108 14 C -0.160 4.160 15 C 0.049 3.951 16 N -0.497 5.497 17 C 0.223 3.777 18 N -0.473 5.473 19 C 0.070 3.930 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.116 4.116 23 C 0.061 3.939 24 H 0.274 0.726 25 H 0.401 0.599 26 H 0.174 0.826 27 H 0.125 0.875 28 H 0.142 0.858 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.036 0.964 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.425 -9.770 -2.647 12.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.569 4.569 8 H 0.090 0.910 9 C 0.351 3.649 10 O -0.453 6.453 11 N -0.318 5.318 12 C 0.062 3.938 13 C -0.137 4.137 14 C -0.181 4.181 15 C -0.111 4.111 16 N -0.209 5.209 17 C -0.011 4.011 18 N -0.195 5.195 19 C -0.058 4.058 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.154 4.154 23 C -0.066 4.066 24 H 0.085 0.915 25 H 0.235 0.765 26 H 0.191 0.809 27 H 0.143 0.857 28 H 0.159 0.841 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.133 -9.905 -2.683 12.498 hybrid contribution 0.038 0.889 -0.165 0.905 sum 7.171 -9.016 -2.848 11.867 Atomic orbital electron populations 1.69986 1.07299 1.28108 1.31953 1.25758 0.94657 1.00704 0.92368 0.86330 0.79878 0.80312 0.79775 1.18997 1.20322 1.18979 1.20010 0.94443 0.89888 1.52547 0.91048 1.17090 0.87507 0.82115 0.78154 1.90516 1.13682 1.85674 1.55403 1.44006 1.10411 1.03686 1.73704 1.18608 0.93013 0.87091 0.95120 1.22473 0.93874 0.98942 0.98417 1.21998 1.00813 0.93539 1.01724 1.22094 0.89873 0.98446 1.00678 1.67408 1.09913 1.26517 1.17087 1.19412 0.90114 0.89874 1.01702 1.59481 1.09504 1.26176 1.24331 1.21880 0.93102 0.89077 1.01731 1.21644 0.95928 1.00917 0.97181 1.21580 1.00058 0.97093 0.97057 1.21597 0.94581 0.97642 1.01546 1.22132 0.97108 1.00358 0.86988 0.91513 0.76487 0.80907 0.85692 0.84103 0.93431 0.91067 0.91725 0.91176 0.92011 0.92432 0.90737 0.91422 0.94564 0.90004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -20.93 11.73 55.55 0.65 -20.28 16 2 C 0.09 2.31 5.50 -17.35 -0.10 2.22 16 3 Si 0.91 18.94 29.56 -169.99 -5.02 13.92 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.53 -14.18 9.31 -37.54 -0.35 -14.53 16 8 H 0.07 1.73 7.85 -52.48 -0.41 1.32 16 9 C 0.54 14.63 7.47 -14.93 -0.11 14.51 16 10 O -0.57 -17.00 11.75 5.11 0.06 -16.94 16 11 N -0.68 -15.35 5.06 -12.18 -0.06 -15.41 16 12 C 0.17 3.62 6.38 -83.37 -0.53 3.09 16 13 C -0.11 -2.34 8.93 -39.09 -0.35 -2.69 16 14 C -0.16 -2.84 10.10 -39.43 -0.40 -3.24 16 15 C 0.05 0.83 11.17 -17.49 -0.20 0.63 16 16 N -0.50 -9.18 9.04 -12.19 -0.11 -9.29 16 17 C 0.22 4.29 5.78 -154.81 -0.89 3.40 16 18 N -0.47 -7.87 3.97 -172.98 -0.69 -8.56 16 19 C 0.07 1.00 4.77 -3.83 -0.02 0.98 16 20 C -0.12 -1.36 6.10 -26.65 -0.16 -1.52 16 21 C -0.12 -1.31 6.00 -26.61 -0.16 -1.47 16 22 C -0.12 -1.45 6.10 -26.65 -0.16 -1.61 16 23 C 0.06 0.95 5.38 -3.83 -0.02 0.93 16 24 H 0.27 6.96 8.29 -40.82 -0.34 6.62 16 25 H 0.40 8.26 8.24 -40.82 -0.34 7.92 16 26 H 0.17 4.25 5.48 -52.49 -0.29 3.96 16 27 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 28 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 29 H 0.05 0.72 7.83 -51.93 -0.41 0.31 16 30 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 1.47 7.81 -51.93 -0.41 1.06 16 LS Contribution 312.14 15.07 4.70 4.70 Total: -1.00 -30.48 312.14 -9.13 -39.61 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -5.21 Total: 11.56 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -3.45 Total: 0.70 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.21 Total: -53.53 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: 0.06 Total: -16.94 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.48 -9.13 -39.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355653369.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.954 kcal (2) G-P(sol) polarization free energy of solvation -30.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds