Wall clock time and date at job start Mon Mar 30 2020 01:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86797 * 119.99800 * 2 1 4 4 H 1.48510 * 109.47270 * 240.00350 * 3 2 1 5 5 H 1.48498 * 109.47520 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47261 * 120.00259 * 3 2 1 7 7 C 1.40137 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.41728 * 120.00411 * 359.97438 * 7 2 1 10 10 O 1.21789 * 119.99759 * 0.02562 * 9 7 2 11 11 N 1.34774 * 120.00214 * 179.97438 * 9 7 2 12 12 C 1.39481 * 119.99901 * 185.42264 * 11 9 7 13 13 C 1.39137 * 120.53788 * 335.83984 * 12 11 9 14 14 C 1.38658 * 118.43020 * 180.24534 * 13 12 11 15 15 C 1.38219 * 119.42330 * 359.74656 * 14 13 12 16 16 N 1.31987 * 121.05198 * 359.97438 * 15 14 13 17 17 C 1.32313 * 121.70772 * 0.02666 * 16 15 14 18 18 N 1.38943 * 119.77128 * 179.97438 * 17 16 15 19 19 C 1.46848 * 110.99886 * 333.25684 * 18 17 16 20 20 C 1.53037 * 109.52353 * 185.83999 * 19 18 17 21 21 C 1.53118 * 109.27608 * 300.82192 * 20 19 18 22 22 C 1.53115 * 109.21504 * 57.62459 * 21 20 19 23 23 C 1.46844 * 111.00113 * 97.46593 * 18 17 16 24 24 H 0.96996 * 120.00146 * 359.97438 * 1 2 3 25 25 H 0.96996 * 119.99937 * 5.42864 * 11 9 7 26 26 H 1.07997 * 120.78276 * 0.02562 * 13 12 11 27 27 H 1.07999 * 120.28989 * 179.72936 * 14 13 12 28 28 H 1.07995 * 119.47094 * 180.02562 * 15 14 13 29 29 H 1.08996 * 109.46102 * 65.82659 * 19 18 17 30 30 H 1.09002 * 109.45324 * 305.84896 * 19 18 17 31 31 H 1.09000 * 109.50481 * 180.87753 * 20 19 18 32 32 H 1.09000 * 109.50252 * 60.75846 * 20 19 18 33 33 H 1.09008 * 109.51828 * 177.55935 * 21 20 19 34 34 H 1.08998 * 109.52500 * 297.68038 * 21 20 19 35 35 H 1.08998 * 109.50696 * 62.31631 * 22 21 20 36 36 H 1.09007 * 109.50098 * 182.43775 * 22 21 20 37 37 H 1.08997 * 109.46641 * 294.17684 * 23 18 17 38 38 H 1.09000 * 109.46108 * 54.15468 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.0940 1.6965 -1.2126 5 1 1.2753 2.7465 0.0006 6 1 3.0940 1.6964 1.2124 7 6 2.0070 -1.2136 -0.0005 8 1 3.0870 -1.2136 -0.0010 9 6 1.2984 -2.4411 -0.0005 10 8 0.0805 -2.4411 -0.0005 11 7 1.9723 -3.6082 -0.0016 12 6 1.2795 -4.8134 -0.1157 13 6 -0.0562 -4.8998 0.2640 14 6 -0.7011 -6.1206 0.1368 15 6 -0.0072 -7.2062 -0.3638 16 7 1.2583 -7.0985 -0.7228 17 6 1.9155 -5.9548 -0.6199 18 7 3.2475 -5.8870 -1.0093 19 6 3.8977 -7.1983 -0.8910 20 6 5.3925 -7.0566 -1.1869 21 6 5.5772 -6.5002 -2.6014 22 6 4.8498 -5.1575 -2.7138 23 6 3.3710 -5.3541 -2.3721 24 1 -0.4850 0.8400 0.0004 25 1 2.9391 -3.6101 0.0771 26 1 -0.5774 -4.0371 0.6520 27 1 -1.7364 -6.2226 0.4267 28 1 -0.5089 -8.1573 -0.4636 29 1 3.4505 -7.8910 -1.6039 30 1 3.7625 -7.5806 0.1208 31 1 5.8721 -8.0327 -1.1143 32 1 5.8432 -6.3746 -0.4659 33 1 6.6393 -6.3568 -2.8006 34 1 5.1623 -7.2011 -3.3257 35 1 5.2916 -4.4448 -2.0175 36 1 4.9418 -4.7779 -3.7314 37 1 2.9262 -6.0555 -3.0780 38 1 2.8533 -4.3971 -2.4361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355653369.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:35 Heat of formation + Delta-G solvation = -16.345894 kcal Electronic energy + Delta-G solvation = -21572.392981 eV Core-core repulsion = 18413.670058 eV Total energy + Delta-G solvation = -3158.722923 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.82547 -39.79263 -38.97950 -35.65848 -34.80877 -34.37331 -32.23197 -31.76018 -30.28119 -28.38403 -25.70646 -24.75498 -23.73356 -22.94871 -21.84897 -20.60495 -19.59328 -18.46782 -17.81441 -17.73451 -16.83945 -16.25279 -15.91898 -15.68505 -15.45459 -15.22549 -14.75452 -14.63372 -14.42247 -14.28174 -13.94573 -13.75771 -13.29364 -13.14689 -13.05067 -12.79188 -12.71963 -12.16051 -12.07202 -11.66672 -11.61957 -11.37632 -11.35454 -10.95072 -10.80686 -10.49514 -9.86125 -9.49025 -8.64615 -8.38932 -7.03427 0.22504 0.46703 1.39545 1.41571 1.54395 2.19870 2.34626 2.59642 2.89094 2.95676 3.61066 3.69898 3.88513 3.96794 4.02154 4.15839 4.29858 4.31599 4.38658 4.41652 4.58613 4.63096 4.69997 4.86446 4.93095 5.00571 5.09718 5.18486 5.23749 5.24598 5.29944 5.38088 5.50821 5.63304 5.86552 5.93129 6.08530 6.11417 6.45742 6.71849 7.05052 7.35201 8.33988 8.52925 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016983 B = 0.006175 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.312087 B = 4533.436439 C = 5933.353639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.035 3.965 3 Si 0.999 3.001 4 H -0.253 1.253 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.561 4.561 8 H 0.089 0.911 9 C 0.528 3.472 10 O -0.609 6.609 11 N -0.671 5.671 12 C 0.131 3.869 13 C -0.132 4.132 14 C -0.155 4.155 15 C 0.063 3.937 16 N -0.501 5.501 17 C 0.231 3.769 18 N -0.479 5.479 19 C 0.071 3.929 20 C -0.113 4.113 21 C -0.115 4.115 22 C -0.111 4.111 23 C 0.065 3.935 24 H 0.280 0.720 25 H 0.407 0.593 26 H 0.137 0.863 27 H 0.156 0.844 28 H 0.187 0.813 29 H 0.042 0.958 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.032 0.968 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.476 -10.918 -3.311 14.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.184 4.184 3 Si 0.818 3.182 4 H -0.177 1.177 5 H -0.196 1.196 6 H -0.177 1.177 7 C -0.595 4.595 8 H 0.107 0.893 9 C 0.338 3.662 10 O -0.497 6.497 11 N -0.312 5.312 12 C 0.027 3.973 13 C -0.161 4.161 14 C -0.175 4.175 15 C -0.096 4.096 16 N -0.214 5.214 17 C -0.002 4.002 18 N -0.201 5.201 19 C -0.056 4.056 20 C -0.151 4.151 21 C -0.152 4.152 22 C -0.149 4.149 23 C -0.062 4.062 24 H 0.090 0.910 25 H 0.243 0.757 26 H 0.155 0.845 27 H 0.174 0.826 28 H 0.204 0.796 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.050 0.950 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.215 -11.114 -3.350 14.822 hybrid contribution -0.675 1.062 0.044 1.259 sum 8.541 -10.052 -3.306 13.599 Atomic orbital electron populations 1.70133 1.09595 1.29654 1.33172 1.26975 0.95490 1.04973 0.90936 0.85043 0.78327 0.74408 0.80464 1.17721 1.19609 1.17728 1.20514 0.95488 0.90496 1.53022 0.89305 1.17431 0.87284 0.83577 0.77869 1.90496 1.15292 1.86720 1.57178 1.43533 1.10439 1.03317 1.73945 1.18829 0.93499 0.87539 0.97399 1.22289 0.94410 0.99566 0.99882 1.22272 1.02188 0.92128 1.00958 1.22834 0.89261 0.99670 0.97840 1.67587 1.10680 1.25791 1.17361 1.19555 0.91148 0.89105 1.00431 1.59500 1.08116 1.27681 1.24769 1.21962 0.94949 0.87536 1.01151 1.21640 0.93537 1.02346 0.97533 1.21568 1.01221 0.95775 0.96672 1.21603 0.92127 0.98954 1.02213 1.22102 0.99278 0.98479 0.86304 0.90970 0.75699 0.84533 0.82612 0.79607 0.93918 0.91842 0.89282 0.91355 0.89615 0.91984 0.91116 0.89967 0.94994 0.93135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -46.51 11.73 21.85 0.26 -46.25 16 2 C 0.04 1.87 5.50 85.33 0.47 2.33 16 3 Si 1.00 38.94 29.56 68.60 2.03 40.97 16 4 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 5 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 6 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 7 C -0.56 -30.71 9.31 23.59 0.22 -30.49 16 8 H 0.09 4.36 7.85 -2.91 -0.02 4.34 16 9 C 0.53 30.13 7.47 85.10 0.64 30.77 16 10 O -0.61 -38.90 11.75 -4.63 -0.05 -38.96 16 11 N -0.67 -32.00 5.06 -310.63 -1.57 -33.57 16 12 C 0.13 5.92 6.38 38.58 0.25 6.17 16 13 C -0.13 -6.00 8.93 22.59 0.20 -5.80 16 14 C -0.15 -5.42 10.10 22.37 0.23 -5.20 16 15 C 0.06 2.00 11.17 84.66 0.95 2.94 16 16 N -0.50 -17.87 9.04 -192.48 -1.74 -19.61 16 17 C 0.23 8.95 5.78 133.33 0.77 9.72 16 18 N -0.48 -15.79 3.97 -701.18 -2.79 -18.57 16 19 C 0.07 1.93 4.77 86.33 0.41 2.34 16 20 C -0.11 -2.27 6.10 30.65 0.19 -2.09 16 21 C -0.11 -2.15 6.00 30.67 0.18 -1.96 16 22 C -0.11 -2.59 6.10 30.65 0.19 -2.41 16 23 C 0.06 2.03 5.38 86.33 0.46 2.49 16 24 H 0.28 14.73 8.29 -92.71 -0.77 13.96 16 25 H 0.41 17.55 8.24 -92.71 -0.76 16.78 16 26 H 0.14 7.27 5.48 -2.91 -0.02 7.25 16 27 H 0.16 4.38 8.06 -2.91 -0.02 4.35 16 28 H 0.19 4.21 8.06 -2.91 -0.02 4.18 16 29 H 0.04 1.20 7.83 -2.39 -0.02 1.18 16 30 H 0.06 1.81 8.10 -2.39 -0.02 1.79 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.05 1.88 7.81 -2.39 -0.02 1.86 16 Total: -1.00 -70.25 312.14 1.59 -68.67 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: 0.31 Total: 38.51 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 5.15 Total: 8.82 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -5.84 Total: -118.00 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -0.05 Total: -38.96 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -70.25 1.59 -68.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355653369.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.320 kcal (2) G-P(sol) polarization free energy of solvation -70.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds