Wall clock time and date at job start Mon Mar 30 2020 01:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00166 * 2 1 4 4 H 1.48497 * 109.47139 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47155 * 300.00407 * 3 2 1 6 6 H 1.48496 * 109.47077 * 60.00341 * 3 2 1 7 7 C 1.37884 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99421 * 173.64862 * 7 2 1 9 9 C 1.50690 * 119.99933 * 353.64621 * 7 2 1 10 10 C 1.53002 * 115.55062 * 85.48199 * 9 7 2 11 11 N 1.46498 * 109.47177 * 65.13805 * 10 9 7 12 12 C 1.34773 * 120.00197 * 178.58417 * 11 10 9 13 13 O 1.21593 * 120.00090 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00218 * 179.72696 * 12 11 10 15 15 C 1.46505 * 120.00183 * 180.27686 * 14 12 11 16 16 C 1.50702 * 109.47045 * 180.02562 * 15 14 12 17 17 C 1.38229 * 119.61648 * 94.72842 * 16 15 14 18 18 C 1.38634 * 119.15590 * 179.75527 * 17 16 15 19 19 C 1.38678 * 118.42167 * 0.50303 * 18 17 16 20 20 C 1.38183 * 119.15928 * 359.73565 * 19 18 17 21 21 N 1.31850 * 119.61515 * 274.99551 * 16 15 14 22 22 C 1.53004 * 117.50159 * 231.14743 * 9 7 2 23 23 C 1.52996 * 117.50424 * 299.81072 * 9 7 2 24 24 H 0.96994 * 120.00241 * 5.05634 * 1 2 3 25 25 H 1.09002 * 109.47035 * 305.14487 * 10 9 7 26 26 H 1.08997 * 109.47581 * 185.14004 * 10 9 7 27 27 H 0.97000 * 120.00179 * 358.58608 * 11 10 9 28 28 H 0.97000 * 120.00102 * 0.27497 * 14 12 11 29 29 H 1.08999 * 109.46808 * 299.99643 * 15 14 12 30 30 H 1.09001 * 109.47368 * 59.99823 * 15 14 12 31 31 H 1.07991 * 120.42127 * 359.97438 * 17 16 15 32 32 H 1.08000 * 120.78759 * 180.26833 * 18 17 16 33 33 H 1.07990 * 120.41500 * 179.71215 * 19 18 17 34 34 H 1.08004 * 119.61089 * 179.97438 * 20 19 18 35 35 H 1.08992 * 117.50521 * 215.00669 * 22 9 7 36 36 H 1.09000 * 117.49433 * 0.02646 * 22 9 7 37 37 H 1.09010 * 117.49559 * 359.97438 * 23 9 7 38 38 H 1.08995 * 117.50577 * 144.97072 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0796 -1.1969 -0.1040 9 6 1.2580 -2.4952 0.1433 10 6 0.7053 -3.0859 -1.1553 11 7 1.8166 -3.4579 -2.0344 12 6 1.5683 -4.0285 -3.2299 13 8 0.4219 -4.2340 -3.5791 14 7 2.5905 -4.3657 -4.0410 15 6 2.3203 -4.9803 -5.3432 16 6 3.6233 -5.2580 -6.0476 17 6 4.2054 -6.5071 -5.9400 18 6 5.4015 -6.7536 -6.5961 19 6 5.9753 -5.7268 -7.3306 20 6 5.3375 -4.5023 -7.3882 21 7 4.1975 -4.3049 -6.7551 22 6 1.7443 -3.4742 1.2139 23 6 0.4383 -2.7022 1.4185 24 1 -0.4850 0.8367 -0.0740 25 1 0.0798 -2.3455 -1.6540 26 1 0.1102 -3.9704 -0.9279 27 1 2.7311 -3.2937 -1.7561 28 1 3.5050 -4.2014 -3.7627 29 1 1.7796 -5.9156 -5.1983 30 1 1.7177 -4.3020 -5.9472 31 1 3.7327 -7.2821 -5.3552 32 1 5.8771 -7.7213 -6.5336 33 1 6.9090 -5.8821 -7.8506 34 1 5.7781 -3.6973 -7.9577 35 1 1.6705 -4.5389 0.9931 36 1 2.6040 -3.1769 1.8144 37 1 0.4394 -1.8974 2.1537 38 1 -0.4948 -3.2588 1.3323 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362330514.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:08 Heat of formation + Delta-G solvation = 6.532061 kcal Electronic energy + Delta-G solvation = -20250.119706 eV Core-core repulsion = 17092.388846 eV Total energy + Delta-G solvation = -3157.730861 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.36109 -40.68189 -38.55270 -36.00735 -34.93774 -33.95578 -33.38710 -32.38959 -28.59674 -27.55161 -26.37854 -24.43347 -23.04236 -22.87326 -21.82793 -21.22173 -19.41530 -18.25971 -17.65213 -17.37966 -17.03305 -16.67979 -16.33735 -16.24760 -15.76248 -15.36706 -15.08996 -14.57756 -14.40810 -14.29401 -14.01040 -13.71519 -13.48610 -13.34183 -12.92218 -12.83128 -12.54620 -12.33052 -12.02090 -11.52721 -11.33557 -10.84526 -10.83097 -10.45842 -10.40912 -10.31758 -10.07785 -9.99573 -9.59990 -8.08772 -6.21575 0.04530 0.36279 1.41095 1.44474 1.53674 1.84129 2.24101 2.43125 2.86824 3.19350 3.21185 3.39210 3.65127 3.74301 4.04229 4.17989 4.22942 4.27073 4.51652 4.55455 4.58869 4.68100 4.74955 4.76819 4.84987 5.01345 5.04683 5.22276 5.26928 5.29476 5.43585 5.60859 5.63536 5.71843 5.77321 5.80159 6.10353 6.38414 6.85478 7.03447 7.19900 7.47674 7.66022 8.98958 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020537 B = 0.003818 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.038649 B = 7331.205249 C = 7985.273181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.024 3.976 3 Si 0.949 3.051 4 H -0.262 1.262 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.503 4.503 8 H 0.063 0.937 9 C 0.004 3.996 10 C 0.200 3.800 11 N -0.714 5.714 12 C 0.699 3.301 13 O -0.643 6.643 14 N -0.728 5.728 15 C 0.195 3.805 16 C 0.092 3.908 17 C -0.153 4.153 18 C -0.075 4.075 19 C -0.159 4.159 20 C 0.082 3.918 21 N -0.507 5.507 22 C -0.175 4.175 23 C -0.158 4.158 24 H 0.258 0.742 25 H 0.025 0.975 26 H 0.035 0.965 27 H 0.406 0.594 28 H 0.406 0.594 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.153 0.847 32 H 0.169 0.831 33 H 0.169 0.831 34 H 0.174 0.826 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.411 -14.014 -11.934 23.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.176 4.176 3 Si 0.775 3.225 4 H -0.186 1.186 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.541 4.541 8 H 0.081 0.919 9 C 0.003 3.997 10 C 0.075 3.925 11 N -0.367 5.367 12 C 0.399 3.601 13 O -0.526 6.526 14 N -0.384 5.384 15 C 0.070 3.930 16 C -0.045 4.045 17 C -0.173 4.173 18 C -0.101 4.101 19 C -0.178 4.178 20 C -0.075 4.075 21 N -0.217 5.217 22 C -0.212 4.212 23 C -0.196 4.196 24 H 0.067 0.933 25 H 0.043 0.957 26 H 0.053 0.947 27 H 0.241 0.759 28 H 0.241 0.759 29 H 0.106 0.894 30 H 0.076 0.924 31 H 0.171 0.829 32 H 0.186 0.814 33 H 0.186 0.814 34 H 0.191 0.809 35 H 0.108 0.892 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.790 -13.253 -12.219 22.103 hybrid contribution 0.930 0.734 0.292 1.220 sum 13.720 -12.519 -11.927 22.073 Atomic orbital electron populations 1.70105 1.07245 1.27220 1.49925 1.25700 0.95455 1.02048 0.94436 0.85651 0.79494 0.80233 0.77104 1.18587 1.21581 1.20923 1.20682 0.93068 0.89623 1.50706 0.91925 1.19051 0.99842 0.94480 0.86279 1.20416 0.86895 0.95272 0.89949 1.44907 1.11019 1.63869 1.16927 1.16116 0.84580 0.78573 0.80875 1.90846 1.21849 1.63526 1.76383 1.44813 1.08161 1.67294 1.18155 1.19856 0.92715 0.98579 0.81826 1.21019 0.96003 0.91097 0.96426 1.22246 0.97106 0.97436 1.00524 1.22054 0.93845 1.00850 0.93378 1.22593 1.02155 0.93528 0.99567 1.23238 0.90305 0.98076 0.95892 1.67436 1.11599 1.34845 1.07829 1.23005 0.97348 0.96288 1.04534 1.22433 0.93803 1.01398 1.01992 0.93257 0.95702 0.94655 0.75902 0.75901 0.89407 0.92431 0.82932 0.81365 0.81376 0.80898 0.89211 0.89535 0.91787 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.20 12.91 21.45 0.28 -51.92 16 2 C 0.02 1.31 5.39 84.66 0.46 1.76 16 3 Si 0.95 43.00 29.55 68.60 2.03 45.03 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 7 C -0.50 -26.03 8.63 25.60 0.22 -25.81 16 8 H 0.06 3.13 7.82 -2.91 -0.02 3.11 16 9 C 0.00 0.20 1.38 -52.93 -0.07 0.13 16 10 C 0.20 9.44 5.50 86.38 0.48 9.92 16 11 N -0.71 -28.68 5.48 -478.53 -2.62 -31.30 16 12 C 0.70 27.85 8.57 179.06 1.53 29.39 16 13 O -0.64 -31.04 16.34 -4.01 -0.07 -31.11 16 14 N -0.73 -21.93 5.55 -482.28 -2.68 -24.61 16 15 C 0.19 5.30 5.98 85.63 0.51 5.81 16 16 C 0.09 2.05 6.15 42.55 0.26 2.31 16 17 C -0.15 -2.41 9.72 22.36 0.22 -2.19 16 18 C -0.08 -0.84 10.18 22.47 0.23 -0.61 16 19 C -0.16 -1.77 10.11 22.36 0.23 -1.54 16 20 C 0.08 1.38 11.18 84.67 0.95 2.32 16 21 N -0.51 -12.21 10.27 -183.88 -1.89 -14.10 16 22 C -0.17 -6.93 9.96 30.62 0.30 -6.63 16 23 C -0.16 -7.24 9.41 30.62 0.29 -6.95 16 24 H 0.26 14.34 8.32 -92.71 -0.77 13.57 16 25 H 0.02 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.04 1.64 8.09 -2.39 -0.02 1.62 16 27 H 0.41 14.50 8.38 -92.71 -0.78 13.72 16 28 H 0.41 10.38 8.48 -92.71 -0.79 9.60 16 29 H 0.09 2.21 8.04 -2.39 -0.02 2.19 16 30 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.15 1.86 8.06 -2.92 -0.02 1.84 16 32 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16 33 H 0.17 0.72 8.06 -2.92 -0.02 0.69 16 34 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 36 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 37 H 0.06 3.15 8.14 -2.38 -0.02 3.14 16 38 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -70.46 333.80 0.16 -70.29 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: -0.49 Total: 29.82 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 5.60 Total: 7.90 kcal Atomic # 7 Polarization: -115.02 SS G_CDS: -6.91 Total: -121.93 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.07 Total: -31.11 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -70.46 0.16 -70.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362330514.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.827 kcal (2) G-P(sol) polarization free energy of solvation -70.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds