Wall clock time and date at job start Mon Mar 30 2020 01:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99819 * 2 1 4 4 H 1.48499 * 109.47522 * 274.24288 * 3 2 1 5 5 H 1.48507 * 109.47256 * 34.24543 * 3 2 1 6 6 H 1.48507 * 109.46899 * 154.24341 * 3 2 1 7 7 C 1.37876 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99722 * 352.90883 * 7 2 1 9 9 C 1.50704 * 120.00263 * 173.19361 * 7 2 1 10 10 C 1.52998 * 115.54563 * 301.36461 * 9 7 2 11 11 N 1.46498 * 109.47310 * 294.79303 * 10 9 7 12 12 C 1.34778 * 119.99663 * 184.70876 * 11 10 9 13 13 O 1.21584 * 120.00258 * 4.73664 * 12 11 10 14 14 N 1.34779 * 119.99537 * 184.72934 * 12 11 10 15 15 C 1.46498 * 119.99961 * 184.68371 * 14 12 11 16 16 C 1.50699 * 109.47316 * 180.02562 * 15 14 12 17 17 C 1.38677 * 120.41896 * 269.72379 * 16 15 14 18 18 C 1.38627 * 118.42028 * 179.77964 * 17 16 15 19 19 C 1.38226 * 119.15907 * 0.51773 * 18 17 16 20 20 N 1.31855 * 120.76504 * 359.72142 * 19 18 17 21 21 C 1.31885 * 121.72485 * 0.02562 * 20 19 18 22 22 C 1.53001 * 117.50059 * 155.69605 * 9 7 2 23 23 C 1.53001 * 117.49864 * 87.03551 * 9 7 2 24 24 H 0.97001 * 120.00265 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47282 * 54.79452 * 10 9 7 26 26 H 1.09003 * 109.46587 * 174.78768 * 10 9 7 27 27 H 0.96995 * 119.99834 * 4.70303 * 11 10 9 28 28 H 0.97001 * 120.00031 * 4.69283 * 14 12 11 29 29 H 1.08997 * 109.47217 * 300.00835 * 15 14 12 30 30 H 1.08999 * 109.46843 * 60.00666 * 15 14 12 31 31 H 1.08002 * 120.79041 * 0.02562 * 17 16 15 32 32 H 1.07998 * 120.42038 * 180.21800 * 18 17 16 33 33 H 1.07998 * 119.61675 * 179.74762 * 19 18 17 34 34 H 1.07998 * 119.61354 * 179.97438 * 21 20 19 35 35 H 1.09000 * 117.49568 * 0.02562 * 22 9 7 36 36 H 1.08993 * 117.49839 * 145.01790 * 22 9 7 37 37 H 1.08999 * 117.49851 * 214.98167 * 23 9 7 38 38 H 1.08997 * 117.49732 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4069 2.0983 -1.3962 5 1 1.4942 2.6252 0.7879 6 1 3.5886 1.4159 0.6084 7 6 2.0045 -1.1940 -0.0005 8 1 1.4707 -2.1258 0.1145 9 6 3.5036 -1.1985 -0.1552 10 6 4.0367 -0.5526 -1.4356 11 7 3.6011 -1.3348 -2.5952 12 6 4.0323 -1.0074 -3.8294 13 8 4.8494 -0.1184 -3.9719 14 7 3.5579 -1.6656 -4.9056 15 6 4.1009 -1.3813 -6.2362 16 6 3.4052 -2.2437 -7.2575 17 6 3.9104 -3.4937 -7.5821 18 6 3.2347 -4.2543 -8.5238 19 6 2.0940 -3.7406 -9.1116 20 7 1.6451 -2.5454 -8.7820 21 6 2.2592 -1.7965 -7.8868 22 6 4.2674 -2.4025 0.3997 23 6 4.3452 -1.0509 1.1140 24 1 -0.4850 0.8400 0.0004 25 1 3.6515 0.4637 -1.5175 26 1 5.1259 -0.5268 -1.4031 27 1 3.0024 -2.0884 -2.4746 28 1 2.8569 -2.3275 -4.7991 29 1 3.9394 -0.3307 -6.4776 30 1 5.1695 -1.5962 -6.2460 31 1 4.8068 -3.8675 -7.1096 32 1 3.5977 -5.2337 -8.7982 33 1 1.5641 -4.3250 -9.8491 34 1 1.8619 -0.8223 -7.6429 35 1 3.6856 -3.1915 0.8762 36 1 5.1500 -2.7342 -0.1472 37 1 5.2789 -0.4939 1.0367 38 1 3.8146 -0.9500 2.0607 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362336728.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:43 Heat of formation + Delta-G solvation = 31.212511 kcal Electronic energy + Delta-G solvation = -20451.590020 eV Core-core repulsion = 17294.929384 eV Total energy + Delta-G solvation = -3156.660636 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.51138 -39.42334 -37.15605 -35.11656 -33.40381 -32.53765 -32.21151 -31.50143 -27.36918 -26.04265 -24.74529 -23.82475 -22.17735 -21.60479 -20.44126 -19.31796 -17.98738 -17.34622 -16.72259 -16.64984 -15.80289 -15.35026 -15.14683 -14.72125 -14.29332 -14.05398 -13.82259 -13.39107 -13.31125 -13.15187 -13.07387 -12.83680 -12.23951 -12.06832 -11.76482 -11.06057 -10.68223 -10.57177 -10.25367 -10.19132 -9.89475 -9.71100 -9.54202 -9.30270 -9.20331 -8.98553 -8.82501 -8.50371 -8.15279 -6.19611 -4.21229 0.75114 0.99451 3.08953 3.29409 3.39041 3.44399 3.61799 3.66148 4.16249 4.37630 4.48811 4.55375 4.63553 4.70808 4.75664 4.99024 5.16162 5.21758 5.37021 5.56764 5.64999 5.68282 5.81018 5.95565 6.01825 6.13755 6.24762 6.40484 6.43704 6.48808 6.62635 6.70258 6.91631 7.06888 7.17382 7.38812 7.65976 7.70313 8.39538 8.51913 8.82121 9.05011 9.44333 10.91348 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022570 B = 0.004051 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.293688 B = 6910.458721 C = 7231.516502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.084 3.916 3 Si 0.870 3.130 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.252 1.252 7 C -0.490 4.490 8 H 0.078 0.922 9 C -0.016 4.016 10 C 0.172 3.828 11 N -0.717 5.717 12 C 0.701 3.299 13 O -0.605 6.605 14 N -0.750 5.750 15 C 0.187 3.813 16 C -0.155 4.155 17 C -0.056 4.056 18 C -0.176 4.176 19 C 0.101 3.899 20 N -0.486 5.486 21 C 0.120 3.880 22 C -0.180 4.180 23 C -0.188 4.188 24 H 0.266 0.734 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.403 0.597 28 H 0.397 0.603 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.099 -7.967 -14.498 18.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.120 4.120 3 Si 0.698 3.302 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.176 1.176 7 C -0.527 4.527 8 H 0.096 0.904 9 C -0.017 4.017 10 C 0.048 3.952 11 N -0.371 5.371 12 C 0.401 3.599 13 O -0.484 6.484 14 N -0.407 5.407 15 C 0.062 3.938 16 C -0.158 4.158 17 C -0.083 4.083 18 C -0.196 4.196 19 C -0.056 4.056 20 N -0.194 5.194 21 C -0.038 4.038 22 C -0.218 4.218 23 C -0.227 4.227 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.238 0.762 28 H 0.231 0.769 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.155 0.845 32 H 0.154 0.846 33 H 0.173 0.827 34 H 0.176 0.824 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.924 -6.692 -14.997 17.822 hybrid contribution 0.474 -0.081 0.532 0.717 sum 7.398 -6.773 -14.465 17.602 Atomic orbital electron populations 1.69890 1.06399 1.27324 1.49154 1.24907 0.94500 0.99084 0.93487 0.87008 0.81291 0.83565 0.78338 1.20387 1.21969 1.17573 1.20244 0.86750 0.94635 1.51066 0.90449 1.19601 0.94727 0.97833 0.89547 1.20952 0.96628 0.93922 0.83709 1.44995 1.52122 1.35541 1.04399 1.15985 0.81449 0.81792 0.80691 1.90871 1.37872 1.34044 1.85640 1.45100 1.43892 1.46182 1.05492 1.19838 0.96880 0.98057 0.79048 1.20986 0.98146 0.96513 1.00128 1.21597 0.98968 0.92808 0.94913 1.22173 0.97446 1.01457 0.98531 1.22853 0.93445 0.91907 0.97379 1.67766 1.31727 1.06043 1.13900 1.22832 0.90869 0.99227 0.90839 1.22771 1.01759 0.91876 1.05357 1.23062 1.01224 0.99727 0.98645 0.92432 0.92900 0.93245 0.76189 0.76914 0.90498 0.90834 0.84547 0.84622 0.82717 0.82418 0.89709 0.90892 0.91110 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.96 55.43 0.77 -25.35 16 2 C 0.08 2.31 5.46 -17.82 -0.10 2.21 16 3 Si 0.87 21.47 24.69 -169.99 -4.20 17.27 16 4 H -0.28 -7.02 6.96 56.52 0.39 -6.63 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.25 -5.88 6.12 56.52 0.35 -5.54 16 7 C -0.49 -12.77 9.19 -34.44 -0.32 -13.09 16 8 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 9 C -0.02 -0.35 0.85 -155.66 -0.13 -0.48 16 10 C 0.17 3.72 5.08 -4.04 -0.02 3.70 16 11 N -0.72 -13.83 5.48 -65.23 -0.36 -14.19 16 12 C 0.70 13.09 8.55 -86.92 -0.74 12.35 16 13 O -0.60 -13.40 16.33 5.29 0.09 -13.31 16 14 N -0.75 -10.48 5.55 -66.42 -0.37 -10.84 16 15 C 0.19 2.20 5.83 -5.20 -0.03 2.17 16 16 C -0.16 -1.56 5.27 -104.48 -0.55 -2.11 16 17 C -0.06 -0.48 9.86 -39.28 -0.39 -0.87 16 18 C -0.18 -1.35 10.11 -39.44 -0.40 -1.75 16 19 C 0.10 0.90 11.18 -17.55 -0.20 0.70 16 20 N -0.49 -5.54 10.36 -13.26 -0.14 -5.68 16 21 C 0.12 1.30 10.86 -17.55 -0.19 1.11 16 22 C -0.18 -3.44 9.96 -26.69 -0.27 -3.70 16 23 C -0.19 -3.82 8.70 -26.69 -0.23 -4.05 16 24 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.05 1.27 4.25 -51.93 -0.22 1.05 16 26 H 0.05 1.03 8.06 -51.93 -0.42 0.62 16 27 H 0.40 7.24 8.36 -40.82 -0.34 6.90 16 28 H 0.40 4.86 8.49 -40.82 -0.35 4.51 16 29 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 30 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 31 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 LS Contribution 323.97 15.07 4.88 4.88 Total: -1.00 -32.32 323.97 -8.05 -40.37 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.17 Total: 10.65 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -3.56 Total: -3.81 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.09 Total: -56.06 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.09 Total: -13.31 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.20 Total: 17.27 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.32 -8.05 -40.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362336728.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.583 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds