Wall clock time and date at job start Mon Mar 30 2020 01:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99819 * 2 1 4 4 H 1.48499 * 109.47522 * 274.24288 * 3 2 1 5 5 H 1.48507 * 109.47256 * 34.24543 * 3 2 1 6 6 H 1.48507 * 109.46899 * 154.24341 * 3 2 1 7 7 C 1.37876 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99722 * 352.90883 * 7 2 1 9 9 C 1.50704 * 120.00263 * 173.19361 * 7 2 1 10 10 C 1.52998 * 115.54563 * 301.36461 * 9 7 2 11 11 N 1.46498 * 109.47310 * 294.79303 * 10 9 7 12 12 C 1.34778 * 119.99663 * 184.70876 * 11 10 9 13 13 O 1.21584 * 120.00258 * 4.73664 * 12 11 10 14 14 N 1.34779 * 119.99537 * 184.72934 * 12 11 10 15 15 C 1.46498 * 119.99961 * 184.68371 * 14 12 11 16 16 C 1.50699 * 109.47316 * 180.02562 * 15 14 12 17 17 C 1.38677 * 120.41896 * 269.72379 * 16 15 14 18 18 C 1.38627 * 118.42028 * 179.77964 * 17 16 15 19 19 C 1.38226 * 119.15907 * 0.51773 * 18 17 16 20 20 N 1.31855 * 120.76504 * 359.72142 * 19 18 17 21 21 C 1.31885 * 121.72485 * 0.02562 * 20 19 18 22 22 C 1.53001 * 117.50059 * 155.69605 * 9 7 2 23 23 C 1.53001 * 117.49864 * 87.03551 * 9 7 2 24 24 H 0.97001 * 120.00265 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47282 * 54.79452 * 10 9 7 26 26 H 1.09003 * 109.46587 * 174.78768 * 10 9 7 27 27 H 0.96995 * 119.99834 * 4.70303 * 11 10 9 28 28 H 0.97001 * 120.00031 * 4.69283 * 14 12 11 29 29 H 1.08997 * 109.47217 * 300.00835 * 15 14 12 30 30 H 1.08999 * 109.46843 * 60.00666 * 15 14 12 31 31 H 1.08002 * 120.79041 * 0.02562 * 17 16 15 32 32 H 1.07998 * 120.42038 * 180.21800 * 18 17 16 33 33 H 1.07998 * 119.61675 * 179.74762 * 19 18 17 34 34 H 1.07998 * 119.61354 * 179.97438 * 21 20 19 35 35 H 1.09000 * 117.49568 * 0.02562 * 22 9 7 36 36 H 1.08993 * 117.49839 * 145.01790 * 22 9 7 37 37 H 1.08999 * 117.49851 * 214.98167 * 23 9 7 38 38 H 1.08997 * 117.49732 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4069 2.0983 -1.3962 5 1 1.4942 2.6252 0.7879 6 1 3.5886 1.4159 0.6084 7 6 2.0045 -1.1940 -0.0005 8 1 1.4707 -2.1258 0.1145 9 6 3.5036 -1.1985 -0.1552 10 6 4.0367 -0.5526 -1.4356 11 7 3.6011 -1.3348 -2.5952 12 6 4.0323 -1.0074 -3.8294 13 8 4.8494 -0.1184 -3.9719 14 7 3.5579 -1.6656 -4.9056 15 6 4.1009 -1.3813 -6.2362 16 6 3.4052 -2.2437 -7.2575 17 6 3.9104 -3.4937 -7.5821 18 6 3.2347 -4.2543 -8.5238 19 6 2.0940 -3.7406 -9.1116 20 7 1.6451 -2.5454 -8.7820 21 6 2.2592 -1.7965 -7.8868 22 6 4.2674 -2.4025 0.3997 23 6 4.3452 -1.0509 1.1140 24 1 -0.4850 0.8400 0.0004 25 1 3.6515 0.4637 -1.5175 26 1 5.1259 -0.5268 -1.4031 27 1 3.0024 -2.0884 -2.4746 28 1 2.8569 -2.3275 -4.7991 29 1 3.9394 -0.3307 -6.4776 30 1 5.1695 -1.5962 -6.2460 31 1 4.8068 -3.8675 -7.1096 32 1 3.5977 -5.2337 -8.7982 33 1 1.5641 -4.3250 -9.8491 34 1 1.8619 -0.8223 -7.6429 35 1 3.6856 -3.1915 0.8762 36 1 5.1500 -2.7342 -0.1472 37 1 5.2789 -0.4939 1.0367 38 1 3.8146 -0.9500 2.0607 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362336728.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:42 Heat of formation + Delta-G solvation = 7.720054 kcal Electronic energy + Delta-G solvation = -20452.608729 eV Core-core repulsion = 17294.929384 eV Total energy + Delta-G solvation = -3157.679345 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.38048 -40.75803 -38.79953 -36.25987 -34.97949 -34.28662 -33.34291 -32.37069 -28.81842 -27.59956 -26.29504 -24.53430 -23.24092 -22.93887 -21.86359 -21.10525 -19.43974 -18.52337 -17.96668 -17.47218 -17.23792 -17.08974 -16.28197 -16.04057 -15.68021 -15.29580 -14.97653 -14.87732 -14.65906 -14.35780 -14.14044 -13.96640 -13.91244 -13.61022 -13.00766 -12.62078 -12.51585 -12.15549 -12.06085 -11.57437 -11.38750 -11.04249 -10.81684 -10.70906 -10.48295 -10.38088 -10.28370 -10.05883 -9.65510 -8.32337 -6.34208 0.01994 0.30694 1.31296 1.38004 1.47365 1.82655 2.17285 2.33447 2.82996 2.96513 3.31421 3.43637 3.55160 3.71430 3.88926 4.02151 4.03106 4.08394 4.31261 4.48449 4.49359 4.54900 4.59364 4.73552 4.80997 4.84677 4.93819 5.08061 5.15991 5.26845 5.28501 5.43069 5.52471 5.62131 5.69227 5.73783 6.05065 6.29849 6.71541 6.98644 7.13248 7.33434 7.59365 8.82071 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022570 B = 0.004051 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.293688 B = 6910.458721 C = 7231.516502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.036 3.964 3 Si 0.919 3.081 4 H -0.291 1.291 5 H -0.297 1.297 6 H -0.228 1.228 7 C -0.474 4.474 8 H 0.046 0.954 9 C -0.042 4.042 10 C 0.179 3.821 11 N -0.719 5.719 12 C 0.699 3.301 13 O -0.640 6.640 14 N -0.733 5.733 15 C 0.189 3.811 16 C -0.158 4.158 17 C -0.056 4.056 18 C -0.167 4.167 19 C 0.093 3.907 20 N -0.516 5.516 21 C 0.103 3.897 22 C -0.153 4.153 23 C -0.184 4.184 24 H 0.264 0.736 25 H 0.026 0.974 26 H 0.061 0.939 27 H 0.409 0.591 28 H 0.407 0.593 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.156 0.844 32 H 0.169 0.831 33 H 0.180 0.820 34 H 0.154 0.846 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.161 -9.592 -15.203 20.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.163 4.163 3 Si 0.746 3.254 4 H -0.218 1.218 5 H -0.224 1.224 6 H -0.151 1.151 7 C -0.512 4.512 8 H 0.064 0.936 9 C -0.043 4.043 10 C 0.054 3.946 11 N -0.372 5.372 12 C 0.399 3.601 13 O -0.523 6.523 14 N -0.389 5.389 15 C 0.065 3.935 16 C -0.161 4.161 17 C -0.083 4.083 18 C -0.186 4.186 19 C -0.064 4.064 20 N -0.225 5.225 21 C -0.054 4.054 22 C -0.190 4.190 23 C -0.222 4.222 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.079 0.921 27 H 0.244 0.756 28 H 0.242 0.758 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.174 0.826 32 H 0.187 0.813 33 H 0.197 0.803 34 H 0.171 0.829 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.992 -8.357 -15.715 19.941 hybrid contribution -0.178 0.279 0.671 0.748 sum 8.814 -8.078 -15.044 19.216 Atomic orbital electron populations 1.70003 1.07918 1.27800 1.52056 1.25520 0.94883 1.01894 0.93956 0.86231 0.81323 0.80359 0.77483 1.21823 1.22436 1.15068 1.20383 0.89078 0.92949 1.48783 0.93584 1.19444 0.92564 1.01448 0.90870 1.20746 0.97047 0.92741 0.84062 1.44920 1.52375 1.35542 1.04376 1.16125 0.81145 0.81659 0.81202 1.90842 1.39582 1.35680 1.86177 1.45028 1.43364 1.45271 1.05242 1.19891 0.97362 0.98047 0.78180 1.20759 0.98128 0.97167 1.00023 1.21882 0.99475 0.92029 0.94885 1.22518 0.96417 1.02456 0.97230 1.23384 0.94037 0.91283 0.97647 1.67759 1.32732 1.07406 1.14624 1.22850 0.91508 0.99478 0.91520 1.22817 1.01566 0.90968 1.03668 1.23110 1.01258 1.00824 0.97043 0.92670 0.95580 0.92083 0.75588 0.75754 0.91535 0.90161 0.82617 0.81332 0.80263 0.82865 0.89605 0.88191 0.88933 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.46 13.96 21.45 0.30 -56.16 16 2 C 0.04 2.03 5.46 84.66 0.46 2.49 16 3 Si 0.92 44.63 24.69 68.60 1.69 46.32 16 4 H -0.29 -14.67 6.96 99.48 0.69 -13.98 16 5 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 6 H -0.23 -10.05 6.12 99.48 0.61 -9.44 16 7 C -0.47 -24.77 9.19 25.60 0.24 -24.54 16 8 H 0.05 2.64 8.06 -2.91 -0.02 2.62 16 9 C -0.04 -1.78 0.85 -52.93 -0.04 -1.82 16 10 C 0.18 7.46 5.08 86.38 0.44 7.90 16 11 N -0.72 -26.95 5.48 -478.54 -2.62 -29.58 16 12 C 0.70 25.50 8.55 179.05 1.53 27.04 16 13 O -0.64 -28.00 16.33 -3.98 -0.07 -28.06 16 14 N -0.73 -19.76 5.55 -482.31 -2.68 -22.44 16 15 C 0.19 4.30 5.83 85.63 0.50 4.80 16 16 C -0.16 -2.99 5.27 -19.77 -0.10 -3.09 16 17 C -0.06 -0.81 9.86 22.47 0.22 -0.59 16 18 C -0.17 -2.02 10.11 22.36 0.23 -1.80 16 19 C 0.09 1.45 11.18 84.69 0.95 2.40 16 20 N -0.52 -11.36 10.36 -195.85 -2.03 -13.39 16 21 C 0.10 2.22 10.86 84.67 0.92 3.14 16 22 C -0.15 -5.35 9.96 30.62 0.30 -5.04 16 23 C -0.18 -6.91 8.70 30.62 0.27 -6.65 16 24 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 25 H 0.03 1.24 4.25 -2.39 -0.01 1.23 16 26 H 0.06 2.40 8.06 -2.39 -0.02 2.38 16 27 H 0.41 14.28 8.36 -92.71 -0.78 13.51 16 28 H 0.41 9.49 8.49 -92.71 -0.79 8.70 16 29 H 0.07 1.66 8.09 -2.39 -0.02 1.64 16 30 H 0.08 1.74 8.09 -2.39 -0.02 1.72 16 31 H 0.16 1.63 8.06 -2.91 -0.02 1.60 16 32 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 33 H 0.18 1.73 8.06 -2.91 -0.02 1.70 16 34 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 35 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 38 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -70.34 323.97 -0.09 -70.43 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: -0.59 Total: 28.66 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 5.90 Total: 4.23 kcal Atomic # 7 Polarization: -114.54 SS G_CDS: -7.03 Total: -121.58 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.07 Total: -28.06 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.69 Total: 46.32 kcal Total: -70.34 -0.09 -70.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362336728.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.150 kcal (2) G-P(sol) polarization free energy of solvation -70.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds