Wall clock time and date at job start Mon Mar 30 2020 01:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48498 * 109.47118 * 89.99532 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00052 * 3 2 1 6 6 H 1.48498 * 109.47011 * 329.99674 * 3 2 1 7 7 C 1.38950 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99988 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00053 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99910 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99985 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99730 * 179.97438 * 10 9 7 13 13 H 1.08998 * 109.90782 * 300.34691 * 12 10 9 14 14 C 1.53995 * 109.91696 * 61.45142 * 12 10 9 15 15 C 1.54598 * 105.13896 * 120.57891 * 14 12 10 16 16 C 1.54929 * 102.92202 * 21.95287 * 15 14 12 17 17 N 1.47903 * 109.91405 * 179.03841 * 12 10 9 18 18 C 1.46900 * 110.99927 * 94.80553 * 17 12 10 19 19 C 1.50698 * 109.47382 * 170.00067 * 18 17 12 20 20 C 1.38223 * 119.61770 * 94.72841 * 19 18 17 21 21 C 1.38636 * 119.15813 * 179.75550 * 20 19 18 22 22 C 1.38680 * 118.41896 * 0.50543 * 21 20 19 23 23 C 1.38180 * 119.16273 * 359.73247 * 22 21 20 24 24 N 1.31856 * 119.61186 * 274.99959 * 19 18 17 25 25 H 0.97001 * 119.99781 * 179.97438 * 1 2 3 26 26 H 0.96996 * 120.00203 * 359.97438 * 9 7 2 27 27 H 1.09001 * 110.31023 * 239.49374 * 14 12 10 28 28 H 1.08999 * 110.31101 * 1.56144 * 14 12 10 29 29 H 1.08992 * 110.72412 * 140.31690 * 15 14 12 30 30 H 1.09008 * 110.72240 * 263.41767 * 15 14 12 31 31 H 1.08999 * 110.66606 * 81.02490 * 16 15 14 32 32 H 1.09007 * 110.67081 * 204.15111 * 16 15 14 33 33 H 1.09001 * 109.47051 * 289.99832 * 18 17 12 34 34 H 1.09001 * 109.46953 * 49.99269 * 18 17 12 35 35 H 1.07999 * 120.42445 * 359.97438 * 20 19 18 36 36 H 1.07995 * 120.79247 * 180.21075 * 21 20 19 37 37 H 1.07996 * 120.41395 * 179.75077 * 22 21 20 38 38 H 1.08003 * 119.62049 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 1.4001 5 1 3.5457 1.4401 -0.7000 6 1 1.4457 2.6526 -0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2437 -4.8630 0.0022 13 1 0.6094 -4.9249 0.8864 14 6 0.3827 -4.9721 -1.2699 15 6 0.8846 -6.2453 -1.9891 16 6 1.5528 -7.0487 -0.8453 17 7 2.1959 -5.9945 -0.0200 18 6 2.4663 -6.4817 1.3392 19 6 3.2364 -7.7750 1.2653 20 6 4.6161 -7.7539 1.3455 21 6 5.3148 -8.9497 1.2817 22 6 4.5968 -10.1262 1.1283 23 6 3.2184 -10.0685 1.0503 24 7 2.5865 -8.9129 1.1196 25 1 -0.4850 -0.8401 -0.0004 26 1 0.3534 -2.3907 0.0005 27 1 -0.6699 -5.0765 -1.0065 28 1 0.5288 -4.0962 -1.9020 29 1 0.0500 -6.8019 -2.4151 30 1 1.6110 -5.9911 -2.7611 31 1 0.8037 -7.5878 -0.2653 32 1 2.3002 -7.7353 -1.2431 33 1 3.0530 -5.7400 1.8811 34 1 1.5231 -6.6496 1.8592 35 1 5.1431 -6.8182 1.4600 36 1 6.3928 -8.9642 1.3451 37 1 5.1086 -11.0754 1.0707 38 1 2.6519 -10.9802 0.9304 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364258826.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:43 Heat of formation + Delta-G solvation = 10.355511 kcal Electronic energy + Delta-G solvation = -21045.710387 eV Core-core repulsion = 17888.145324 eV Total energy + Delta-G solvation = -3157.565063 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.40542 -39.17455 -37.09518 -34.16603 -33.37431 -32.40064 -31.05043 -30.33160 -28.86692 -25.95948 -24.54330 -23.54406 -22.34733 -21.50801 -20.64428 -19.19645 -17.82464 -16.94466 -16.62953 -16.24768 -15.91426 -15.33688 -14.82259 -14.42301 -13.82836 -13.78066 -13.61772 -13.55087 -13.28334 -12.98207 -12.76209 -12.30676 -12.16131 -11.50309 -11.27617 -11.18266 -11.05801 -10.94508 -10.79697 -10.49521 -10.18826 -9.91845 -9.80115 -9.48896 -9.46521 -9.09962 -8.50159 -7.95631 -7.89335 -6.69108 -3.81744 1.03413 1.22416 3.34563 3.38192 3.57216 3.62667 3.91477 4.11806 4.22672 4.40358 4.65429 4.75110 4.88519 4.94719 5.01484 5.08878 5.13827 5.22292 5.33714 5.44548 5.53872 5.58752 5.72757 5.75670 5.86266 5.89604 6.02499 6.03610 6.09258 6.16516 6.18583 6.31733 6.42920 6.64139 7.07986 7.22903 7.88112 7.93653 8.14780 8.68389 8.88946 9.55576 9.98499 10.74625 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029859 B = 0.004120 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.528005 B = 6793.675342 C = 7423.184704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.011 4.011 3 Si 1.093 2.907 4 H -0.285 1.285 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.379 4.379 8 H 0.098 0.902 9 N -0.579 5.579 10 C 0.458 3.542 11 O -0.566 6.566 12 C 0.057 3.943 13 H 0.064 0.936 14 C -0.122 4.122 15 C -0.122 4.122 16 C 0.043 3.957 17 N -0.479 5.479 18 C 0.098 3.902 19 C 0.140 3.860 20 C -0.146 4.146 21 C -0.078 4.078 22 C -0.180 4.180 23 C 0.094 3.906 24 N -0.481 5.481 25 H 0.261 0.739 26 H 0.374 0.626 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.073 -18.120 1.139 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.213 4.213 3 Si 0.919 3.081 4 H -0.212 1.212 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.509 4.509 8 H 0.116 0.884 9 N -0.218 5.218 10 C 0.243 3.757 11 O -0.448 6.448 12 C -0.055 4.055 13 H 0.082 0.918 14 C -0.161 4.161 15 C -0.160 4.160 16 C -0.085 4.085 17 N -0.204 5.204 18 C -0.030 4.030 19 C 0.002 3.998 20 C -0.167 4.167 21 C -0.104 4.104 22 C -0.200 4.200 23 C -0.063 4.063 24 N -0.191 5.191 25 H 0.072 0.928 26 H 0.207 0.793 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.068 0.932 35 H 0.158 0.842 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.330 -16.248 0.880 16.609 hybrid contribution -0.175 -2.075 0.480 2.137 sum 3.155 -18.323 1.360 18.642 Atomic orbital electron populations 1.70867 1.06501 1.29349 1.47685 1.26457 0.96568 1.02519 0.95740 0.83102 0.74383 0.73532 0.77065 1.21207 1.20979 1.20717 1.20549 0.94615 0.83872 1.51841 0.88392 1.41930 1.08090 1.05400 1.66391 1.19548 0.88260 0.83899 0.84008 1.90508 1.13559 1.86751 1.53969 1.22283 0.92388 0.92373 0.98455 0.91807 1.22421 0.98410 0.99413 0.95869 1.22467 0.99956 0.95671 0.97884 1.23186 0.97184 0.93831 0.94264 1.64505 1.41035 1.04749 1.10084 1.21185 0.98777 0.91519 0.91558 1.21099 0.91415 0.93191 0.94086 1.22074 0.95036 0.99469 1.00082 1.21609 1.00559 0.92330 0.95911 1.22097 0.95852 0.99204 1.02822 1.22684 0.92004 0.95773 0.95857 1.67522 1.41353 0.98243 1.11940 0.92784 0.79269 0.91097 0.90237 0.91180 0.90836 0.92901 0.90918 0.88575 0.93162 0.84248 0.84917 0.85108 0.83030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.57 13.68 55.50 0.76 -24.81 16 2 C -0.01 -0.30 5.50 -17.47 -0.10 -0.39 16 3 Si 1.09 24.60 29.92 -169.99 -5.09 19.52 16 4 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.38 -10.77 9.68 -14.93 -0.14 -10.92 16 8 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 9 N -0.58 -14.77 5.15 -10.96 -0.06 -14.83 16 10 C 0.46 11.09 6.95 -10.98 -0.08 11.01 16 11 O -0.57 -15.82 16.03 5.55 0.09 -15.73 16 12 C 0.06 1.07 2.87 -67.79 -0.19 0.88 16 13 H 0.06 1.11 7.58 -51.93 -0.39 0.72 16 14 C -0.12 -1.98 6.47 -25.37 -0.16 -2.14 16 15 C -0.12 -1.75 7.06 -24.87 -0.18 -1.92 16 16 C 0.04 0.65 5.04 -1.90 -0.01 0.64 16 17 N -0.48 -8.53 4.53 -225.38 -1.02 -9.55 16 18 C 0.10 1.58 5.35 -4.98 -0.03 1.55 16 19 C 0.14 2.03 5.40 -82.59 -0.45 1.58 16 20 C -0.15 -1.92 9.72 -39.44 -0.38 -2.31 16 21 C -0.08 -0.82 10.18 -39.27 -0.40 -1.22 16 22 C -0.18 -1.71 10.11 -39.44 -0.40 -2.11 16 23 C 0.09 1.01 11.18 -17.55 -0.20 0.82 16 24 N -0.48 -6.55 9.09 -9.47 -0.09 -6.63 16 25 H 0.26 7.10 6.78 -40.82 -0.28 6.83 16 26 H 0.37 8.88 6.69 -40.82 -0.27 8.60 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.08 1.43 7.62 -51.93 -0.40 1.03 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 31 H 0.05 0.77 7.77 -51.93 -0.40 0.37 16 32 H 0.07 1.12 7.79 -51.92 -0.40 0.71 16 33 H 0.10 1.64 8.04 -51.93 -0.42 1.23 16 34 H 0.05 0.77 7.82 -51.93 -0.41 0.36 16 35 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.15 1.19 8.06 -52.48 -0.42 0.76 16 LS Contribution 319.14 15.07 4.81 4.81 Total: -1.00 -33.50 319.14 -8.41 -41.90 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -5.10 Total: 9.85 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -2.71 Total: -4.53 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.40 Total: -55.82 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: 0.09 Total: -15.73 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.09 Total: 19.52 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.50 -8.41 -41.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364258826.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.259 kcal (2) G-P(sol) polarization free energy of solvation -33.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds