Wall clock time and date at job start Mon Mar 30 2020 01:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 120.00152 * 2 1 4 4 H 1.48498 * 109.47118 * 89.99532 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00052 * 3 2 1 6 6 H 1.48498 * 109.47011 * 329.99674 * 3 2 1 7 7 C 1.38950 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99988 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00053 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99910 * 180.02562 * 9 7 2 11 11 O 1.21288 * 119.99985 * 359.97438 * 10 9 7 12 12 C 1.50706 * 119.99730 * 179.97438 * 10 9 7 13 13 H 1.08998 * 109.90782 * 300.34691 * 12 10 9 14 14 C 1.53995 * 109.91696 * 61.45142 * 12 10 9 15 15 C 1.54598 * 105.13896 * 120.57891 * 14 12 10 16 16 C 1.54929 * 102.92202 * 21.95287 * 15 14 12 17 17 N 1.47903 * 109.91405 * 179.03841 * 12 10 9 18 18 C 1.46900 * 110.99927 * 94.80553 * 17 12 10 19 19 C 1.50698 * 109.47382 * 170.00067 * 18 17 12 20 20 C 1.38223 * 119.61770 * 94.72841 * 19 18 17 21 21 C 1.38636 * 119.15813 * 179.75550 * 20 19 18 22 22 C 1.38680 * 118.41896 * 0.50543 * 21 20 19 23 23 C 1.38180 * 119.16273 * 359.73247 * 22 21 20 24 24 N 1.31856 * 119.61186 * 274.99959 * 19 18 17 25 25 H 0.97001 * 119.99781 * 179.97438 * 1 2 3 26 26 H 0.96996 * 120.00203 * 359.97438 * 9 7 2 27 27 H 1.09001 * 110.31023 * 239.49374 * 14 12 10 28 28 H 1.08999 * 110.31101 * 1.56144 * 14 12 10 29 29 H 1.08992 * 110.72412 * 140.31690 * 15 14 12 30 30 H 1.09008 * 110.72240 * 263.41767 * 15 14 12 31 31 H 1.08999 * 110.66606 * 81.02490 * 16 15 14 32 32 H 1.09007 * 110.67081 * 204.15111 * 16 15 14 33 33 H 1.09001 * 109.47051 * 289.99832 * 18 17 12 34 34 H 1.09001 * 109.46953 * 49.99269 * 18 17 12 35 35 H 1.07999 * 120.42445 * 359.97438 * 20 19 18 36 36 H 1.07995 * 120.79247 * 180.21075 * 21 20 19 37 37 H 1.07996 * 120.41395 * 179.75077 * 22 21 20 38 38 H 1.08003 * 119.62049 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 1.4001 5 1 3.5457 1.4401 -0.7000 6 1 1.4457 2.6526 -0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2437 -4.8630 0.0022 13 1 0.6094 -4.9249 0.8864 14 6 0.3827 -4.9721 -1.2699 15 6 0.8846 -6.2453 -1.9891 16 6 1.5528 -7.0487 -0.8453 17 7 2.1959 -5.9945 -0.0200 18 6 2.4663 -6.4817 1.3392 19 6 3.2364 -7.7750 1.2653 20 6 4.6161 -7.7539 1.3455 21 6 5.3148 -8.9497 1.2817 22 6 4.5968 -10.1262 1.1283 23 6 3.2184 -10.0685 1.0503 24 7 2.5865 -8.9129 1.1196 25 1 -0.4850 -0.8401 -0.0004 26 1 0.3534 -2.3907 0.0005 27 1 -0.6699 -5.0765 -1.0065 28 1 0.5288 -4.0962 -1.9020 29 1 0.0500 -6.8019 -2.4151 30 1 1.6110 -5.9911 -2.7611 31 1 0.8037 -7.5878 -0.2653 32 1 2.3002 -7.7353 -1.2431 33 1 3.0530 -5.7400 1.8811 34 1 1.5231 -6.6496 1.8592 35 1 5.1431 -6.8182 1.4600 36 1 6.3928 -8.9642 1.3451 37 1 5.1086 -11.0754 1.0707 38 1 2.6519 -10.9802 0.9304 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364258826.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:43 Heat of formation + Delta-G solvation = -13.346177 kcal Electronic energy + Delta-G solvation = -21046.738169 eV Core-core repulsion = 17888.145324 eV Total energy + Delta-G solvation = -3158.592846 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.48170 -40.66376 -38.78789 -36.27944 -34.50228 -33.31491 -33.07564 -31.42457 -30.35695 -27.11868 -26.57109 -24.42286 -23.67301 -22.87065 -21.83002 -20.96066 -19.92932 -18.40048 -17.76485 -17.36572 -17.00823 -16.75029 -16.30052 -16.06435 -15.52926 -15.28461 -14.97979 -14.67029 -14.53246 -14.39027 -13.93559 -13.52530 -13.48863 -13.26737 -12.86218 -12.56950 -12.52617 -12.31992 -12.11177 -11.93730 -11.88682 -11.73951 -11.48675 -10.80408 -10.42188 -10.36068 -10.07486 -10.00711 -9.36077 -8.91063 -6.04350 0.12929 0.35730 1.52593 1.54938 1.82195 2.02731 2.37418 2.58962 2.92960 3.15986 3.18445 3.41335 3.62244 3.65670 3.83560 3.89442 4.02479 4.15360 4.22401 4.24547 4.27206 4.43110 4.48110 4.55761 4.70498 4.73226 4.80824 4.84951 4.90956 5.03880 5.18321 5.24747 5.28739 5.57728 5.76598 5.82521 5.95595 5.98445 6.60503 6.78339 7.01844 7.47029 7.97139 8.56692 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029859 B = 0.004120 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.528005 B = 6793.675342 C = 7423.184704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.042 4.042 3 Si 1.135 2.865 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.272 1.272 7 C -0.408 4.408 8 H 0.071 0.929 9 N -0.586 5.586 10 C 0.456 3.544 11 O -0.610 6.610 12 C 0.064 3.936 13 H 0.079 0.921 14 C -0.119 4.119 15 C -0.115 4.115 16 C 0.054 3.946 17 N -0.504 5.504 18 C 0.103 3.897 19 C 0.118 3.882 20 C -0.169 4.169 21 C -0.077 4.077 22 C -0.166 4.166 23 C 0.088 3.912 24 N -0.498 5.498 25 H 0.259 0.741 26 H 0.383 0.617 27 H 0.102 0.898 28 H 0.056 0.944 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.125 0.875 36 H 0.160 0.840 37 H 0.170 0.830 38 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.697 -20.341 0.858 20.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.240 4.240 3 Si 0.955 3.045 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.537 4.537 8 H 0.089 0.911 9 N -0.226 5.226 10 C 0.243 3.757 11 O -0.494 6.494 12 C -0.048 4.048 13 H 0.097 0.903 14 C -0.158 4.158 15 C -0.153 4.153 16 C -0.073 4.073 17 N -0.229 5.229 18 C -0.026 4.026 19 C -0.019 4.019 20 C -0.189 4.189 21 C -0.103 4.103 22 C -0.185 4.185 23 C -0.069 4.069 24 N -0.209 5.209 25 H 0.070 0.930 26 H 0.217 0.783 27 H 0.121 0.879 28 H 0.075 0.925 29 H 0.124 0.876 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.143 0.857 36 H 0.177 0.823 37 H 0.188 0.812 38 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 2.924 -18.495 0.601 18.734 hybrid contribution 0.006 -1.532 0.584 1.639 sum 2.930 -20.027 1.185 20.275 Atomic orbital electron populations 1.70937 1.06938 1.29438 1.48370 1.27797 0.96706 1.05200 0.94295 0.82601 0.73616 0.70240 0.78016 1.19591 1.20387 1.19666 1.20530 0.93798 0.85660 1.53749 0.91097 1.41951 1.08444 1.05282 1.66906 1.20622 0.88108 0.85388 0.81599 1.90471 1.15813 1.87722 1.55402 1.22169 0.92256 0.89728 1.00650 0.90286 1.22433 0.99688 0.99438 0.94199 1.22489 1.00769 0.94867 0.97134 1.23119 0.97129 0.93057 0.93971 1.64372 1.41505 1.05516 1.11493 1.21036 0.98850 0.92108 0.90586 1.20815 0.91694 0.92916 0.96437 1.22101 0.94914 1.00319 1.01580 1.21956 1.01979 0.91630 0.94751 1.22528 0.95468 1.00281 1.00264 1.23315 0.93142 0.95769 0.94715 1.67466 1.41990 0.98675 1.12723 0.93036 0.78308 0.87912 0.92522 0.87583 0.92094 0.91812 0.91199 0.91136 0.92691 0.85701 0.82283 0.81227 0.79881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.00 13.68 21.66 0.30 -51.71 16 2 C -0.04 -2.33 5.50 84.93 0.47 -1.86 16 3 Si 1.14 49.59 29.92 68.60 2.05 51.64 16 4 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.41 -23.97 9.68 84.04 0.81 -23.15 16 8 H 0.07 4.49 7.16 -2.91 -0.02 4.47 16 9 N -0.59 -30.91 5.15 -306.98 -1.58 -32.49 16 10 C 0.46 22.92 6.95 87.66 0.61 23.53 16 11 O -0.61 -35.84 16.03 -3.05 -0.05 -35.89 16 12 C 0.06 2.42 2.87 44.31 0.13 2.55 16 13 H 0.08 2.73 7.58 -2.39 -0.02 2.72 16 14 C -0.12 -3.71 6.47 31.47 0.20 -3.51 16 15 C -0.11 -3.08 7.06 31.80 0.22 -2.85 16 16 C 0.05 1.57 5.04 86.65 0.44 2.01 16 17 N -0.50 -18.17 4.53 -866.96 -3.93 -22.10 16 18 C 0.10 3.41 5.35 85.56 0.46 3.87 16 19 C 0.12 3.44 5.40 42.55 0.23 3.67 16 20 C -0.17 -4.49 9.72 22.36 0.22 -4.27 16 21 C -0.08 -1.47 10.18 22.47 0.23 -1.25 16 22 C -0.17 -2.57 10.11 22.36 0.23 -2.34 16 23 C 0.09 1.63 11.18 84.67 0.95 2.58 16 24 N -0.50 -12.85 9.09 -183.88 -1.67 -14.52 16 25 H 0.26 14.23 6.78 -92.71 -0.63 13.60 16 26 H 0.38 18.61 6.69 -92.71 -0.62 17.99 16 27 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.06 2.03 7.62 -2.39 -0.02 2.01 16 29 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.06 1.72 7.77 -2.39 -0.02 1.70 16 32 H 0.07 2.07 7.79 -2.38 -0.02 2.05 16 33 H 0.07 2.62 8.04 -2.39 -0.02 2.60 16 34 H 0.06 1.71 7.82 -2.39 -0.02 1.69 16 35 H 0.12 3.54 8.06 -2.91 -0.02 3.52 16 36 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 37 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 38 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -74.99 319.14 0.90 -74.09 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: 0.59 Total: 31.99 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: 5.19 Total: -1.03 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -6.88 Total: -120.81 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -0.05 Total: -35.89 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 2.05 Total: 51.64 kcal Total: -74.99 0.90 -74.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364258826.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.741 kcal (2) G-P(sol) polarization free energy of solvation -74.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds