Wall clock time and date at job start Mon Mar 30 2020 01:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86804 * 119.99955 * 2 1 4 4 H 1.48505 * 109.46851 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47290 * 300.00504 * 3 2 1 6 6 H 1.48500 * 109.46831 * 60.00518 * 3 2 1 7 7 C 1.38948 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99907 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99872 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99975 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99709 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99909 * 180.02562 * 10 9 7 13 13 H 1.08992 * 110.73039 * 56.90806 * 12 10 9 14 14 C 1.54932 * 110.66694 * 293.80390 * 12 10 9 15 15 C 1.54599 * 102.92142 * 204.15552 * 14 12 10 16 16 C 1.53990 * 105.14071 * 21.95851 * 15 14 12 17 17 N 1.47897 * 107.05821 * 1.22548 * 16 15 14 18 18 C 1.46905 * 111.00132 * 214.15564 * 17 16 15 19 19 C 1.50703 * 109.47012 * 69.87692 * 18 17 16 20 20 C 1.38220 * 119.62033 * 94.97436 * 19 18 17 21 21 C 1.38627 * 119.16050 * 180.02562 * 20 19 18 22 22 C 1.38678 * 118.42399 * 0.02562 * 21 20 19 23 23 C 1.38176 * 119.15893 * 0.02562 * 22 21 20 24 24 N 1.31860 * 119.61682 * 275.00049 * 19 18 17 25 25 H 0.96996 * 120.00204 * 359.97438 * 1 2 3 26 26 H 0.96995 * 120.00319 * 359.97438 * 9 7 2 27 27 H 1.09000 * 110.72493 * 85.79604 * 14 12 10 28 28 H 1.09004 * 110.87820 * 322.58299 * 14 12 10 29 29 H 1.09003 * 110.30586 * 263.04062 * 15 14 12 30 30 H 1.09004 * 110.39487 * 140.91956 * 15 14 12 31 31 H 1.09004 * 109.91619 * 241.87632 * 16 15 14 32 32 H 1.08998 * 109.92071 * 120.57828 * 16 15 14 33 33 H 1.08999 * 109.46878 * 309.87581 * 18 17 16 34 34 H 1.08997 * 109.47100 * 189.87494 * 18 17 16 35 35 H 1.08000 * 120.42111 * 0.02562 * 20 19 18 36 36 H 1.08007 * 120.78745 * 180.02562 * 21 20 19 37 37 H 1.07995 * 120.42098 * 179.97438 * 22 21 20 38 38 H 1.08003 * 119.62028 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0016 10 6 1.9972 -3.5579 -0.0016 11 8 3.2102 -3.5578 -0.0011 12 6 1.2437 -4.8629 -0.0034 13 1 0.5698 -4.9181 -0.8582 14 6 0.4621 -5.0448 1.3219 15 6 0.3028 -6.5793 1.4215 16 6 1.4223 -7.1581 0.5366 17 7 2.1852 -6.0118 -0.0030 18 6 2.6710 -6.2948 -1.3603 19 6 1.5052 -6.3249 -2.3149 20 6 1.1733 -5.1858 -3.0240 21 6 0.0989 -5.2240 -3.8991 22 6 -0.6051 -6.4118 -4.0286 23 6 -0.2153 -7.5098 -3.2858 24 7 0.8134 -7.4375 -2.4637 25 1 -0.4850 0.8400 0.0004 26 1 0.3534 -2.3906 -0.0016 27 1 -0.5119 -4.5588 1.2651 28 1 1.0345 -4.6608 2.1664 29 1 -0.6734 -6.8836 1.0440 30 1 0.4280 -6.9080 2.4533 31 1 0.9889 -7.7338 -0.2813 32 1 2.0776 -7.7920 1.1340 33 1 3.1750 -7.2612 -1.3716 34 1 3.3704 -5.5165 -1.6654 35 1 1.7438 -4.2775 -2.8978 36 1 -0.1832 -4.3494 -4.4666 37 1 -1.4478 -6.4775 -4.7007 38 1 -0.7586 -8.4384 -3.3805 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000364258827.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:46 Heat of formation + Delta-G solvation = 11.504472 kcal Electronic energy + Delta-G solvation = -21740.323910 eV Core-core repulsion = 18582.808669 eV Total energy + Delta-G solvation = -3157.515241 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.59353 -38.85607 -37.00306 -33.87718 -33.20495 -32.32928 -31.22998 -30.11623 -28.90678 -25.83013 -24.87405 -23.47202 -22.44948 -21.27703 -20.48137 -18.83519 -17.82758 -16.79011 -16.40841 -16.14797 -15.83933 -15.23135 -14.71575 -14.16284 -14.08374 -13.66271 -13.59564 -13.43504 -13.11718 -13.09743 -12.30399 -12.25894 -11.74051 -11.63102 -11.42765 -11.25920 -11.06800 -11.00773 -10.75336 -10.37483 -10.33455 -10.20105 -9.78039 -9.51156 -9.48629 -8.93765 -8.38337 -7.94433 -7.88189 -6.39977 -3.80522 1.12474 1.32680 3.16763 3.27400 3.34571 3.78789 3.92778 4.09681 4.27536 4.41161 4.81693 4.88012 4.95520 4.99812 5.12256 5.21892 5.25027 5.29131 5.32884 5.58556 5.65403 5.67850 5.82095 5.83890 6.01207 6.09137 6.13710 6.18067 6.20767 6.27917 6.37329 6.40635 6.51146 6.75845 7.18470 7.33197 7.56895 8.01550 8.08963 8.64849 9.20657 9.57774 10.10286 10.77929 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019431 B = 0.005781 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.626044 B = 4842.429258 C = 5489.057230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.927 3.073 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.296 4.296 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.457 3.543 11 O -0.574 6.574 12 C 0.048 3.952 13 H 0.066 0.934 14 C -0.113 4.113 15 C -0.128 4.128 16 C 0.022 3.978 17 N -0.472 5.472 18 C 0.096 3.904 19 C 0.098 3.902 20 C -0.153 4.153 21 C -0.074 4.074 22 C -0.177 4.177 23 C 0.090 3.910 24 N -0.478 5.478 25 H 0.270 0.730 26 H 0.391 0.609 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.230 -12.678 -5.040 14.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.754 3.246 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.426 4.426 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.242 3.758 11 O -0.457 6.457 12 C -0.064 4.064 13 H 0.084 0.916 14 C -0.151 4.151 15 C -0.166 4.166 16 C -0.106 4.106 17 N -0.194 5.194 18 C -0.033 4.033 19 C -0.042 4.042 20 C -0.173 4.173 21 C -0.100 4.100 22 C -0.198 4.198 23 C -0.067 4.067 24 N -0.188 5.188 25 H 0.080 0.920 26 H 0.224 0.776 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.793 -13.145 -4.222 14.086 hybrid contribution -1.392 1.529 -1.114 2.349 sum -4.186 -11.616 -5.336 13.451 Atomic orbital electron populations 1.69620 1.05913 1.27937 1.50950 1.25232 0.95596 0.99609 0.97495 0.85835 0.79761 0.81300 0.77672 1.19215 1.20843 1.20786 1.19747 0.93359 0.82190 1.47306 0.87881 1.41854 1.09079 1.04453 1.64748 1.19486 0.88133 0.84055 0.84172 1.90516 1.13550 1.86916 1.54762 1.22792 0.93150 0.92132 0.98281 0.91625 1.22438 0.99885 0.95569 0.97258 1.22371 0.98225 0.95747 1.00257 1.23083 0.94900 0.93950 0.98695 1.64795 1.33708 1.02749 1.18104 1.21456 0.92948 1.03570 0.85279 1.22284 0.97383 0.88882 0.95619 1.22226 0.98412 1.00091 0.96612 1.21648 0.93990 0.98037 0.96358 1.22098 1.01481 0.94360 1.01823 1.22716 0.93470 0.98255 0.92248 1.67580 1.06515 1.27313 1.17391 0.92010 0.77649 0.90821 0.90230 0.91986 0.91150 0.91310 0.90585 0.89345 0.87943 0.84306 0.84751 0.85088 0.83096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 8 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 9 N -0.56 -14.24 5.28 -10.96 -0.06 -14.30 16 10 C 0.46 10.86 7.03 -10.99 -0.08 10.78 16 11 O -0.57 -15.60 15.43 5.54 0.09 -15.52 16 12 C 0.05 0.92 2.27 -66.94 -0.15 0.76 16 13 H 0.07 1.23 5.09 -51.93 -0.26 0.96 16 14 C -0.11 -1.91 6.48 -24.87 -0.16 -2.07 16 15 C -0.13 -1.79 6.93 -25.37 -0.18 -1.97 16 16 C 0.02 0.32 6.46 -2.76 -0.02 0.31 16 17 N -0.47 -8.42 4.82 -225.43 -1.09 -9.51 16 18 C 0.10 1.59 5.57 -4.97 -0.03 1.57 16 19 C 0.10 1.51 4.58 -82.58 -0.38 1.14 16 20 C -0.15 -2.35 7.92 -39.44 -0.31 -2.67 16 21 C -0.07 -0.96 10.18 -39.28 -0.40 -1.36 16 22 C -0.18 -2.00 10.11 -39.44 -0.40 -2.40 16 23 C 0.09 1.08 11.18 -17.55 -0.20 0.88 16 24 N -0.48 -6.89 8.50 -9.47 -0.08 -6.97 16 25 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 26 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.08 1.45 8.05 -51.93 -0.42 1.03 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.02 5.69 -51.93 -0.30 0.72 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 34 H 0.10 1.85 7.51 -51.93 -0.39 1.46 16 35 H 0.14 2.35 8.06 -52.49 -0.42 1.92 16 36 H 0.13 1.50 8.06 -52.48 -0.42 1.07 16 37 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.15 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 314.43 15.07 4.74 4.74 Total: -1.00 -31.05 314.43 -8.24 -39.29 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -5.00 Total: 12.89 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -2.54 Total: -2.87 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.50 Total: -54.46 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.09 Total: -15.52 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.05 -8.24 -39.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364258827.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.799 kcal (2) G-P(sol) polarization free energy of solvation -31.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds