Wall clock time and date at job start Mon Mar 30 2020 01:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86804 * 119.99955 * 2 1 4 4 H 1.48505 * 109.46851 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47290 * 300.00504 * 3 2 1 6 6 H 1.48500 * 109.46831 * 60.00518 * 3 2 1 7 7 C 1.38948 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99907 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99872 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99975 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99709 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99909 * 180.02562 * 10 9 7 13 13 H 1.08992 * 110.73039 * 56.90806 * 12 10 9 14 14 C 1.54932 * 110.66694 * 293.80390 * 12 10 9 15 15 C 1.54599 * 102.92142 * 204.15552 * 14 12 10 16 16 C 1.53990 * 105.14071 * 21.95851 * 15 14 12 17 17 N 1.47897 * 107.05821 * 1.22548 * 16 15 14 18 18 C 1.46905 * 111.00132 * 214.15564 * 17 16 15 19 19 C 1.50703 * 109.47012 * 69.87692 * 18 17 16 20 20 C 1.38220 * 119.62033 * 94.97436 * 19 18 17 21 21 C 1.38627 * 119.16050 * 180.02562 * 20 19 18 22 22 C 1.38678 * 118.42399 * 0.02562 * 21 20 19 23 23 C 1.38176 * 119.15893 * 0.02562 * 22 21 20 24 24 N 1.31860 * 119.61682 * 275.00049 * 19 18 17 25 25 H 0.96996 * 120.00204 * 359.97438 * 1 2 3 26 26 H 0.96995 * 120.00319 * 359.97438 * 9 7 2 27 27 H 1.09000 * 110.72493 * 85.79604 * 14 12 10 28 28 H 1.09004 * 110.87820 * 322.58299 * 14 12 10 29 29 H 1.09003 * 110.30586 * 263.04062 * 15 14 12 30 30 H 1.09004 * 110.39487 * 140.91956 * 15 14 12 31 31 H 1.09004 * 109.91619 * 241.87632 * 16 15 14 32 32 H 1.08998 * 109.92071 * 120.57828 * 16 15 14 33 33 H 1.08999 * 109.46878 * 309.87581 * 18 17 16 34 34 H 1.08997 * 109.47100 * 189.87494 * 18 17 16 35 35 H 1.08000 * 120.42111 * 0.02562 * 20 19 18 36 36 H 1.08007 * 120.78745 * 180.02562 * 21 20 19 37 37 H 1.07995 * 120.42098 * 179.97438 * 22 21 20 38 38 H 1.08003 * 119.62028 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0016 10 6 1.9972 -3.5579 -0.0016 11 8 3.2102 -3.5578 -0.0011 12 6 1.2437 -4.8629 -0.0034 13 1 0.5698 -4.9181 -0.8582 14 6 0.4621 -5.0448 1.3219 15 6 0.3028 -6.5793 1.4215 16 6 1.4223 -7.1581 0.5366 17 7 2.1852 -6.0118 -0.0030 18 6 2.6710 -6.2948 -1.3603 19 6 1.5052 -6.3249 -2.3149 20 6 1.1733 -5.1858 -3.0240 21 6 0.0989 -5.2240 -3.8991 22 6 -0.6051 -6.4118 -4.0286 23 6 -0.2153 -7.5098 -3.2858 24 7 0.8134 -7.4375 -2.4637 25 1 -0.4850 0.8400 0.0004 26 1 0.3534 -2.3906 -0.0016 27 1 -0.5119 -4.5588 1.2651 28 1 1.0345 -4.6608 2.1664 29 1 -0.6734 -6.8836 1.0440 30 1 0.4280 -6.9080 2.4533 31 1 0.9889 -7.7338 -0.2813 32 1 2.0776 -7.7920 1.1340 33 1 3.1750 -7.2612 -1.3716 34 1 3.3704 -5.5165 -1.6654 35 1 1.7438 -4.2775 -2.8978 36 1 -0.1832 -4.3494 -4.4666 37 1 -1.4478 -6.4775 -4.7007 38 1 -0.7586 -8.4384 -3.3805 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000364258827.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:46 Heat of formation + Delta-G solvation = -10.282866 kcal Electronic energy + Delta-G solvation = -21741.268680 eV Core-core repulsion = 18582.808669 eV Total energy + Delta-G solvation = -3158.460011 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.79381 -40.34703 -38.66779 -35.92271 -34.41027 -33.38917 -33.23438 -31.29958 -30.37325 -27.11006 -26.79607 -24.50376 -23.75908 -22.69453 -21.72409 -20.61373 -19.79398 -18.19226 -17.68821 -17.36265 -17.03807 -16.72595 -16.30444 -15.84314 -15.52890 -15.33714 -15.01372 -14.77755 -14.36987 -14.20801 -13.97017 -13.52156 -13.44101 -13.01311 -12.91623 -12.74427 -12.53148 -12.41331 -12.32436 -12.11647 -12.05406 -11.58386 -11.49440 -10.82445 -10.60508 -10.27918 -10.00198 -9.94730 -9.30376 -8.45985 -5.94542 0.08636 0.29350 1.35923 1.41274 1.55383 2.04452 2.27926 2.68541 2.89057 3.18781 3.23131 3.51027 3.66896 3.76170 3.81206 3.99135 4.03616 4.11813 4.20325 4.25973 4.42028 4.48112 4.56850 4.61238 4.77601 4.83943 4.88200 4.89179 4.99076 5.08654 5.18383 5.25859 5.28955 5.41670 5.74038 5.78694 6.03579 6.06100 6.60901 6.96879 7.13622 7.56311 8.12666 8.71762 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.019431 B = 0.005781 C = 0.005100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.626044 B = 4842.429258 C = 5489.057230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.991 3.009 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.330 4.330 8 H 0.078 0.922 9 N -0.570 5.570 10 C 0.457 3.543 11 O -0.615 6.615 12 C 0.060 3.940 13 H 0.072 0.928 14 C -0.114 4.114 15 C -0.116 4.116 16 C 0.023 3.977 17 N -0.494 5.494 18 C 0.100 3.900 19 C 0.088 3.912 20 C -0.177 4.177 21 C -0.080 4.080 22 C -0.163 4.163 23 C 0.090 3.910 24 N -0.488 5.488 25 H 0.277 0.723 26 H 0.393 0.607 27 H 0.083 0.917 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.149 0.851 37 H 0.171 0.829 38 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.400 -13.967 -5.574 16.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.210 4.210 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.460 4.460 8 H 0.096 0.904 9 N -0.207 5.207 10 C 0.243 3.757 11 O -0.500 6.500 12 C -0.052 4.052 13 H 0.090 0.910 14 C -0.153 4.153 15 C -0.154 4.154 16 C -0.104 4.104 17 N -0.216 5.216 18 C -0.029 4.029 19 C -0.051 4.051 20 C -0.198 4.198 21 C -0.106 4.106 22 C -0.183 4.183 23 C -0.067 4.067 24 N -0.198 5.198 25 H 0.087 0.913 26 H 0.226 0.774 27 H 0.102 0.898 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.125 0.875 36 H 0.167 0.833 37 H 0.188 0.812 38 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -4.984 -14.445 -4.753 16.003 hybrid contribution -0.743 1.869 -1.020 2.255 sum -5.727 -12.577 -5.773 14.977 Atomic orbital electron populations 1.69678 1.06789 1.29157 1.50488 1.25992 0.96503 1.02218 0.96332 0.84903 0.78040 0.77241 0.78353 1.19893 1.19513 1.19625 1.19682 0.92613 0.83896 1.49780 0.90412 1.41868 1.09035 1.04518 1.65251 1.20367 0.87921 0.85335 0.82032 1.90477 1.15617 1.87785 1.56165 1.22581 0.92916 0.89917 0.99797 0.91043 1.22455 0.99539 0.98254 0.95032 1.22360 0.98797 0.92847 1.01431 1.23154 0.95227 0.92948 0.99046 1.64730 1.34242 1.03506 1.19156 1.21266 0.93320 1.02941 0.85388 1.21915 0.97606 0.89503 0.96054 1.22069 0.99850 0.99171 0.98696 1.21905 0.93246 0.99687 0.95718 1.22506 1.01554 0.92912 1.01279 1.23410 0.92442 0.99914 0.90899 1.67569 1.07392 1.26420 1.18462 0.91331 0.77377 0.89833 0.92134 0.90012 0.89157 0.90714 0.89423 0.88059 0.91065 0.87457 0.83333 0.81197 0.79355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.78 13.05 21.66 0.28 -49.50 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 3 Si 0.99 43.23 29.55 68.60 2.03 45.26 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.33 -19.00 9.68 84.04 0.81 -18.19 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 9 N -0.57 -30.04 5.28 -306.98 -1.62 -31.67 16 10 C 0.46 22.83 7.03 87.65 0.62 23.45 16 11 O -0.61 -35.52 15.43 -3.08 -0.05 -35.56 16 12 C 0.06 2.32 2.27 44.51 0.10 2.42 16 13 H 0.07 2.72 5.09 -2.39 -0.01 2.71 16 14 C -0.11 -3.80 6.48 31.80 0.21 -3.59 16 15 C -0.12 -2.98 6.93 31.47 0.22 -2.76 16 16 C 0.02 0.66 6.46 86.45 0.56 1.22 16 17 N -0.49 -17.88 4.82 -867.11 -4.18 -22.06 16 18 C 0.10 3.42 5.57 85.56 0.48 3.90 16 19 C 0.09 2.72 4.58 42.55 0.19 2.92 16 20 C -0.18 -5.61 7.92 22.36 0.18 -5.43 16 21 C -0.08 -1.97 10.18 22.47 0.23 -1.74 16 22 C -0.16 -3.08 10.11 22.36 0.23 -2.86 16 23 C 0.09 1.83 11.18 84.67 0.95 2.78 16 24 N -0.49 -13.11 8.50 -183.89 -1.56 -14.67 16 25 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 26 H 0.39 19.94 7.90 -92.71 -0.73 19.21 16 27 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.06 2.23 8.05 -2.39 -0.02 2.21 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 2.04 5.69 -2.38 -0.01 2.03 16 32 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.10 3.09 8.08 -2.39 -0.02 3.07 16 34 H 0.07 2.82 7.51 -2.39 -0.02 2.81 16 35 H 0.11 4.00 8.06 -2.91 -0.02 3.97 16 36 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 37 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 38 H 0.19 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -69.40 314.43 0.47 -68.92 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: 0.34 Total: 37.27 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: 5.23 Total: 2.01 kcal Atomic # 7 Polarization: -110.82 SS G_CDS: -7.08 Total: -117.90 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -0.05 Total: -35.56 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -69.40 0.47 -68.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000364258827.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.639 kcal (2) G-P(sol) polarization free energy of solvation -69.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds