Wall clock time and date at job start Mon Mar 30 2020 01:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34227 * 116.99707 * 2 1 4 4 O 1.20824 * 120.00195 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99990 * 180.02562 * 3 2 1 6 6 H 1.08993 * 110.64207 * 59.29664 * 5 3 2 7 7 C 1.54329 * 110.71538 * 296.15183 * 5 3 2 8 8 N 1.47018 * 107.27192 * 219.44113 * 7 5 3 9 9 C 1.36930 * 125.64967 * 178.97826 * 8 7 5 10 10 H 1.08003 * 120.00329 * 174.79426 * 9 8 7 11 11 C 1.38819 * 120.00163 * 354.79420 * 9 8 7 12 12 N 1.31621 * 119.99739 * 7.05264 * 11 9 8 13 13 Si 1.86797 * 120.00253 * 187.05577 * 11 9 8 14 14 H 1.48494 * 109.47273 * 94.98609 * 13 11 9 15 15 H 1.48498 * 109.46817 * 214.98465 * 13 11 9 16 16 H 1.48503 * 109.46980 * 334.98191 * 13 11 9 17 17 C 1.47428 * 108.70434 * 358.94838 * 8 7 5 18 18 C 1.55123 * 104.94098 * 23.99915 * 17 8 7 19 19 H 1.08998 * 110.93715 * 81.21759 * 18 17 8 20 20 C 1.50707 * 111.16275 * 205.13288 * 18 17 8 21 21 C 1.38241 * 119.99600 * 51.90062 * 20 18 17 22 22 C 1.38231 * 119.99499 * 179.79381 * 21 20 18 23 23 C 1.38234 * 120.00262 * 0.45149 * 22 21 20 24 24 C 1.38236 * 119.99968 * 359.77983 * 23 22 21 25 25 C 1.38227 * 120.00091 * 232.17183 * 20 18 17 26 26 H 1.09005 * 109.47396 * 60.00222 * 1 2 3 27 27 H 1.09001 * 109.47586 * 300.00514 * 1 2 3 28 28 H 1.09005 * 109.47165 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.88433 * 338.86500 * 7 5 3 30 30 H 1.09004 * 109.87952 * 99.87103 * 7 5 3 31 31 H 0.97000 * 120.00102 * 179.97438 * 12 11 9 32 32 H 1.08994 * 110.37024 * 142.96262 * 17 8 7 33 33 H 1.09003 * 110.36279 * 265.29153 * 17 8 7 34 34 H 1.07999 * 120.00195 * 359.97438 * 21 20 18 35 35 H 1.08005 * 120.00254 * 180.25195 * 22 21 20 36 36 H 1.08001 * 120.00322 * 179.79447 * 23 22 21 37 37 H 1.08000 * 120.00014 * 180.02562 * 24 23 22 38 38 H 1.08003 * 120.00140 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9769 0.7752 -0.8778 7 6 4.1453 0.6679 1.2948 8 7 5.2710 1.5176 1.7099 9 6 6.0419 1.3318 2.8262 10 1 6.9007 1.9631 3.0006 11 6 5.7196 0.3321 3.7338 12 7 4.7603 -0.5250 3.4555 13 14 6.6473 0.2034 5.3500 14 1 5.8947 0.9193 6.4112 15 1 6.7925 -1.2262 5.7248 16 1 7.9923 0.8145 5.1988 17 6 5.4328 2.6024 0.7247 18 6 4.0385 2.7516 0.0614 19 1 3.3728 3.3489 0.6843 20 6 4.1540 3.3402 -1.3211 21 6 5.0204 2.7795 -2.2409 22 6 5.1231 3.3169 -3.5104 23 6 4.3664 4.4204 -3.8572 24 6 3.5035 4.9840 -2.9359 25 6 3.3976 4.4441 -1.6677 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 3.3820 0.6576 2.0728 30 1 4.4943 -0.3471 1.1047 31 1 4.5354 -1.2239 4.0895 32 1 5.7176 3.5287 1.2237 33 1 6.1778 2.3284 -0.0223 34 1 5.6149 1.9200 -1.9686 35 1 5.7970 2.8764 -4.2303 36 1 4.4491 4.8423 -4.8479 37 1 2.9119 5.8460 -3.2069 38 1 2.7236 4.8845 -0.9478 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374159147.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:07 Heat of formation + Delta-G solvation = -34.275172 kcal Electronic energy + Delta-G solvation = -21503.200713 eV Core-core repulsion = 18311.407567 eV Total energy + Delta-G solvation = -3191.793146 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.33584 -39.10981 -37.12856 -35.91072 -33.10942 -31.01287 -30.67451 -29.93990 -27.56695 -26.92777 -24.82972 -22.89435 -22.29530 -21.36973 -20.14167 -19.26406 -17.25215 -17.08337 -16.60134 -16.08853 -15.86903 -15.11016 -14.68982 -14.49661 -13.90749 -13.68488 -13.18353 -12.95876 -12.83074 -12.73252 -12.44761 -12.19777 -12.00716 -11.76789 -11.16339 -11.07859 -10.96288 -10.85998 -10.76277 -10.46332 -10.32962 -10.18464 -10.00344 -9.85615 -9.70295 -8.71952 -8.63023 -8.41749 -6.91147 -5.77995 -3.10889 1.55663 1.61558 2.66655 3.13990 3.39344 3.44744 3.46541 3.98052 4.45902 4.95205 5.03727 5.07726 5.15705 5.31359 5.31693 5.34387 5.39409 5.47574 5.64259 5.67160 5.68859 5.74297 5.79509 5.84800 6.06424 6.16811 6.23812 6.32580 6.57759 6.66295 6.68733 6.76036 6.77997 7.02073 7.21950 7.38070 7.45507 7.72714 8.15469 8.19433 9.13983 9.74837 10.39367 11.34733 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.016621 B = 0.006128 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.184640 B = 4567.875074 C = 5816.151149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.353 6.353 3 C 0.481 3.519 4 O -0.515 6.515 5 C -0.104 4.104 6 H 0.105 0.895 7 C 0.195 3.805 8 N -0.604 5.604 9 C -0.231 4.231 10 H 0.082 0.918 11 C -0.006 4.006 12 N -0.920 5.920 13 Si 0.912 3.088 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.280 1.280 17 C 0.144 3.856 18 C -0.050 4.050 19 H 0.095 0.905 20 C -0.059 4.059 21 C -0.115 4.115 22 C -0.123 4.123 23 C -0.132 4.132 24 C -0.125 4.125 25 C -0.105 4.105 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.254 0.746 32 H 0.048 0.952 33 H 0.028 0.972 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.547 4.923 -12.232 13.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.269 6.269 3 C 0.325 3.675 4 O -0.403 6.403 5 C -0.124 4.124 6 H 0.123 0.877 7 C 0.070 3.930 8 N -0.330 5.330 9 C -0.359 4.359 10 H 0.100 0.900 11 C -0.202 4.202 12 N -0.567 5.567 13 Si 0.743 3.257 14 H -0.216 1.216 15 H -0.217 1.217 16 H -0.205 1.205 17 C 0.018 3.982 18 C -0.070 4.070 19 H 0.113 0.887 20 C -0.060 4.060 21 C -0.133 4.133 22 C -0.141 4.141 23 C -0.150 4.150 24 C -0.143 4.143 25 C -0.123 4.123 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.143 0.857 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.758 5.048 -12.025 13.882 hybrid contribution 0.097 -0.107 0.810 0.823 sum -4.661 4.940 -11.214 13.110 Atomic orbital electron populations 1.23179 0.77373 1.03218 1.02031 1.86580 1.22587 1.33705 1.84002 1.23672 0.91881 0.80970 0.71000 1.90585 1.67188 1.36427 1.46121 1.22586 0.86770 0.98532 1.04537 0.87738 1.21088 0.90335 0.93466 0.88151 1.44420 1.35716 1.27565 1.25327 1.19069 1.06309 1.14419 0.96093 0.90030 1.24845 0.98742 0.97818 0.98809 1.69922 1.32819 1.18317 1.35632 0.86089 0.78932 0.76953 0.83753 1.21581 1.21710 1.20543 1.21726 0.92175 0.92607 0.91730 1.21383 0.99545 0.93364 0.92692 0.88654 1.19802 0.95673 0.95265 0.95236 1.21121 0.98545 1.00389 0.93233 1.21082 0.99764 0.96767 0.96446 1.21058 0.97669 0.97039 0.99244 1.21085 0.99174 1.00104 0.93895 1.21100 0.98789 0.95978 0.96480 0.92467 0.92103 0.88476 0.92801 0.92487 0.93513 0.93408 0.95446 0.85691 0.86393 0.86670 0.86535 0.86061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.55 101.05 1.07 1.55 16 2 O -0.35 -6.29 10.56 -39.25 -0.41 -6.71 16 3 C 0.48 9.27 7.12 36.01 0.26 9.52 16 4 O -0.52 -10.40 15.48 -18.75 -0.29 -10.69 16 5 C -0.10 -2.02 2.86 -89.93 -0.26 -2.27 16 6 H 0.10 1.84 7.22 -51.93 -0.38 1.47 16 7 C 0.19 4.65 4.97 -3.06 -0.02 4.64 16 8 N -0.60 -15.11 3.40 -169.94 -0.58 -15.68 16 9 C -0.23 -6.31 10.27 -15.06 -0.15 -6.46 16 10 H 0.08 2.15 7.84 -52.48 -0.41 1.73 16 11 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 12 N -0.92 -26.54 10.36 55.49 0.57 -25.97 16 13 Si 0.91 21.79 29.56 -169.99 -5.02 16.76 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 C 0.14 2.94 6.65 -2.41 -0.02 2.92 16 18 C -0.05 -0.93 2.34 -89.50 -0.21 -1.14 16 19 H 0.10 1.89 7.27 -51.93 -0.38 1.51 16 20 C -0.06 -0.95 5.00 -104.62 -0.52 -1.48 16 21 C -0.11 -1.69 8.31 -39.58 -0.33 -2.02 16 22 C -0.12 -1.56 10.05 -39.59 -0.40 -1.96 16 23 C -0.13 -1.60 10.05 -39.58 -0.40 -2.00 16 24 C -0.12 -1.61 10.05 -39.58 -0.40 -2.00 16 25 C -0.11 -1.58 9.69 -39.59 -0.38 -1.96 16 26 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 27 H 0.06 0.83 8.13 -51.93 -0.42 0.40 16 28 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 1.45 6.97 -51.93 -0.36 1.09 16 30 H 0.06 1.48 7.61 -51.93 -0.40 1.08 16 31 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.03 0.54 6.63 -51.93 -0.34 0.20 16 34 H 0.13 1.80 7.01 -52.49 -0.37 1.43 16 35 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.12 1.78 7.99 -52.48 -0.42 1.36 16 LS Contribution 317.64 15.07 4.79 4.79 Total: -1.00 -30.93 317.64 -7.95 -38.88 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.15 Total: 1.54 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -1.85 Total: -2.92 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.00 Total: -41.65 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.70 Total: -17.40 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.93 -7.95 -38.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374159147.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.603 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds