Wall clock time and date at job start Mon Mar 30 2020 01:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34227 * 116.99707 * 2 1 4 4 O 1.20824 * 120.00195 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99990 * 180.02562 * 3 2 1 6 6 H 1.08993 * 110.64207 * 59.29664 * 5 3 2 7 7 C 1.54329 * 110.71538 * 296.15183 * 5 3 2 8 8 N 1.47018 * 107.27192 * 219.44113 * 7 5 3 9 9 C 1.36930 * 125.64967 * 178.97826 * 8 7 5 10 10 H 1.08003 * 120.00329 * 174.79426 * 9 8 7 11 11 C 1.38819 * 120.00163 * 354.79420 * 9 8 7 12 12 N 1.31621 * 119.99739 * 7.05264 * 11 9 8 13 13 Si 1.86797 * 120.00253 * 187.05577 * 11 9 8 14 14 H 1.48494 * 109.47273 * 94.98609 * 13 11 9 15 15 H 1.48498 * 109.46817 * 214.98465 * 13 11 9 16 16 H 1.48503 * 109.46980 * 334.98191 * 13 11 9 17 17 C 1.47428 * 108.70434 * 358.94838 * 8 7 5 18 18 C 1.55123 * 104.94098 * 23.99915 * 17 8 7 19 19 H 1.08998 * 110.93715 * 81.21759 * 18 17 8 20 20 C 1.50707 * 111.16275 * 205.13288 * 18 17 8 21 21 C 1.38241 * 119.99600 * 51.90062 * 20 18 17 22 22 C 1.38231 * 119.99499 * 179.79381 * 21 20 18 23 23 C 1.38234 * 120.00262 * 0.45149 * 22 21 20 24 24 C 1.38236 * 119.99968 * 359.77983 * 23 22 21 25 25 C 1.38227 * 120.00091 * 232.17183 * 20 18 17 26 26 H 1.09005 * 109.47396 * 60.00222 * 1 2 3 27 27 H 1.09001 * 109.47586 * 300.00514 * 1 2 3 28 28 H 1.09005 * 109.47165 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.88433 * 338.86500 * 7 5 3 30 30 H 1.09004 * 109.87952 * 99.87103 * 7 5 3 31 31 H 0.97000 * 120.00102 * 179.97438 * 12 11 9 32 32 H 1.08994 * 110.37024 * 142.96262 * 17 8 7 33 33 H 1.09003 * 110.36279 * 265.29153 * 17 8 7 34 34 H 1.07999 * 120.00195 * 359.97438 * 21 20 18 35 35 H 1.08005 * 120.00254 * 180.25195 * 22 21 20 36 36 H 1.08001 * 120.00322 * 179.79447 * 23 22 21 37 37 H 1.08000 * 120.00014 * 180.02562 * 24 23 22 38 38 H 1.08003 * 120.00140 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9769 0.7752 -0.8778 7 6 4.1453 0.6679 1.2948 8 7 5.2710 1.5176 1.7099 9 6 6.0419 1.3318 2.8262 10 1 6.9007 1.9631 3.0006 11 6 5.7196 0.3321 3.7338 12 7 4.7603 -0.5250 3.4555 13 14 6.6473 0.2034 5.3500 14 1 5.8947 0.9193 6.4112 15 1 6.7925 -1.2262 5.7248 16 1 7.9923 0.8145 5.1988 17 6 5.4328 2.6024 0.7247 18 6 4.0385 2.7516 0.0614 19 1 3.3728 3.3489 0.6843 20 6 4.1540 3.3402 -1.3211 21 6 5.0204 2.7795 -2.2409 22 6 5.1231 3.3169 -3.5104 23 6 4.3664 4.4204 -3.8572 24 6 3.5035 4.9840 -2.9359 25 6 3.3976 4.4441 -1.6677 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 3.3820 0.6576 2.0728 30 1 4.4943 -0.3471 1.1047 31 1 4.5354 -1.2239 4.0895 32 1 5.7176 3.5287 1.2237 33 1 6.1778 2.3284 -0.0223 34 1 5.6149 1.9200 -1.9686 35 1 5.7970 2.8764 -4.2303 36 1 4.4491 4.8423 -4.8479 37 1 2.9119 5.8460 -3.2069 38 1 2.7236 4.8845 -0.9478 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374159147.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:07 Heat of formation + Delta-G solvation = -50.949982 kcal Electronic energy + Delta-G solvation = -21503.923787 eV Core-core repulsion = 18311.407567 eV Total energy + Delta-G solvation = -3192.516220 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.82186 -40.33673 -38.64930 -37.42847 -34.91293 -32.57236 -31.73004 -31.62647 -28.99869 -28.32504 -26.72301 -24.26243 -23.48513 -22.84773 -21.78776 -20.70538 -18.99157 -18.69106 -17.93326 -17.57958 -17.26216 -16.68549 -16.07988 -15.80507 -15.38383 -15.29202 -14.41602 -14.35536 -14.28183 -14.07289 -13.97248 -13.71175 -13.61758 -12.99922 -12.97220 -12.75027 -12.53402 -12.40576 -12.06773 -12.04955 -11.89155 -11.79575 -11.63830 -11.59442 -11.37178 -10.71864 -9.74837 -9.54795 -8.94816 -7.88358 -5.23626 0.48072 0.57277 1.11869 1.47912 1.49774 1.58655 1.76919 2.49196 2.89301 3.31375 3.44211 3.59555 3.80761 3.95347 4.08590 4.17499 4.22564 4.23425 4.30455 4.31832 4.36741 4.48657 4.53180 4.66301 4.70828 4.81656 4.91324 5.15172 5.21186 5.26434 5.31557 5.40039 5.41896 5.63465 5.65001 5.67752 5.83085 6.13000 6.18956 6.69663 7.04885 7.70826 8.35636 9.23304 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.016621 B = 0.006128 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.184640 B = 4567.875074 C = 5816.151149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.482 3.518 4 O -0.527 6.527 5 C -0.095 4.095 6 H 0.123 0.877 7 C 0.210 3.790 8 N -0.624 5.624 9 C -0.244 4.244 10 H 0.088 0.912 11 C -0.062 4.062 12 N -0.949 5.949 13 Si 0.979 3.021 14 H -0.290 1.290 15 H -0.293 1.293 16 H -0.265 1.265 17 C 0.143 3.857 18 C -0.033 4.033 19 H 0.075 0.925 20 C -0.079 4.079 21 C -0.126 4.126 22 C -0.121 4.121 23 C -0.125 4.125 24 C -0.124 4.124 25 C -0.121 4.121 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.131 0.869 29 H 0.015 0.985 30 H 0.028 0.972 31 H 0.249 0.751 32 H 0.048 0.952 33 H 0.043 0.957 34 H 0.123 0.877 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.142 0.858 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.215 5.924 -14.305 16.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.326 3.674 4 O -0.416 6.416 5 C -0.114 4.114 6 H 0.141 0.859 7 C 0.085 3.915 8 N -0.351 5.351 9 C -0.373 4.373 10 H 0.106 0.894 11 C -0.255 4.255 12 N -0.598 5.598 13 Si 0.807 3.193 14 H -0.217 1.217 15 H -0.220 1.220 16 H -0.190 1.190 17 C 0.018 3.982 18 C -0.053 4.053 19 H 0.094 0.906 20 C -0.079 4.079 21 C -0.144 4.144 22 C -0.139 4.139 23 C -0.142 4.142 24 C -0.142 4.142 25 C -0.139 4.139 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.149 0.851 29 H 0.033 0.967 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.141 0.859 35 H 0.163 0.837 36 H 0.167 0.833 37 H 0.160 0.840 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.421 6.070 -14.122 15.995 hybrid contribution -0.048 -0.389 1.367 1.422 sum -4.469 5.681 -12.756 14.661 Atomic orbital electron populations 1.23557 0.74796 1.05697 1.02454 1.86553 1.25183 1.32828 1.83520 1.23530 0.91767 0.81284 0.70827 1.90568 1.67409 1.36868 1.46790 1.22433 0.87282 0.99102 1.02612 0.85889 1.20654 0.89149 0.92580 0.89156 1.44696 1.35614 1.29013 1.25774 1.19469 1.06704 1.14181 0.96925 0.89410 1.25675 1.00015 0.97801 1.02005 1.70135 1.34435 1.18832 1.36374 0.85055 0.78285 0.76529 0.79451 1.21708 1.22000 1.18971 1.21867 0.93926 0.91255 0.91179 1.21120 0.97441 0.92501 0.94204 0.90628 1.19594 0.97722 0.96537 0.94051 1.21190 0.98483 1.00625 0.94074 1.21419 0.99858 0.96692 0.95894 1.21491 0.96139 0.96180 1.00427 1.21401 0.99300 1.00598 0.92907 1.21171 0.98978 0.96051 0.97689 0.91129 0.92601 0.85069 0.96725 0.95350 0.94142 0.93358 0.93890 0.85921 0.83668 0.83284 0.83995 0.86737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.55 113.37 1.20 1.92 16 2 O -0.36 -13.08 10.56 -51.39 -0.54 -13.62 16 3 C 0.48 18.86 7.12 71.24 0.51 19.37 16 4 O -0.53 -21.50 15.48 21.97 0.34 -21.16 16 5 C -0.09 -3.74 2.86 -10.35 -0.03 -3.77 16 6 H 0.12 4.36 7.22 -2.39 -0.02 4.34 16 7 C 0.21 10.51 4.97 86.73 0.43 10.95 16 8 N -0.62 -32.20 3.40 -691.55 -2.35 -34.55 16 9 C -0.24 -13.61 10.27 84.04 0.86 -12.75 16 10 H 0.09 4.65 7.84 -2.91 -0.02 4.62 16 11 C -0.06 -3.49 5.48 84.86 0.46 -3.02 16 12 N -0.95 -56.85 10.36 21.65 0.22 -56.63 16 13 Si 0.98 45.52 29.56 68.60 2.03 47.55 16 14 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 15 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 17 C 0.14 5.90 6.65 86.93 0.58 6.48 16 18 C -0.03 -1.25 2.34 -10.07 -0.02 -1.27 16 19 H 0.08 3.11 7.27 -2.39 -0.02 3.09 16 20 C -0.08 -2.47 5.00 -19.86 -0.10 -2.57 16 21 C -0.13 -3.47 8.31 22.27 0.19 -3.29 16 22 C -0.12 -2.66 10.05 22.27 0.22 -2.44 16 23 C -0.12 -2.51 10.05 22.27 0.22 -2.28 16 24 C -0.12 -2.82 10.05 22.27 0.22 -2.60 16 25 C -0.12 -3.48 9.69 22.27 0.22 -3.26 16 26 H 0.07 1.64 8.13 -2.38 -0.02 1.62 16 27 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16 28 H 0.13 2.46 8.14 -2.38 -0.02 2.44 16 29 H 0.01 0.83 6.97 -2.39 -0.02 0.82 16 30 H 0.03 1.55 7.61 -2.39 -0.02 1.54 16 31 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 32 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.04 1.67 6.63 -2.39 -0.02 1.65 16 34 H 0.12 3.37 7.01 -2.91 -0.02 3.35 16 35 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 36 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 37 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 38 H 0.11 3.36 7.99 -2.91 -0.02 3.33 16 Total: -1.00 -68.48 317.64 5.71 -62.77 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 1.05 Total: 14.19 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: 4.96 Total: 1.46 kcal Atomic # 7 Polarization: -89.05 SS G_CDS: -2.12 Total: -91.18 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -0.20 Total: -34.78 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -68.48 5.71 -62.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374159147.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.819 kcal (2) G-P(sol) polarization free energy of solvation -68.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds