Wall clock time and date at job start Mon Mar 30 2020 01:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42101 * 108.57551 * 2 1 4 4 O 1.42094 * 108.57958 * 228.97499 * 2 1 3 5 5 C 1.81404 * 101.92055 * 114.48541 * 2 1 3 6 6 C 1.52997 * 109.46805 * 180.02562 * 5 2 1 7 7 C 1.53125 * 109.52222 * 175.00059 * 6 5 2 8 8 C 1.53033 * 109.28287 * 177.61979 * 7 6 5 9 9 N 1.46851 * 109.52231 * 300.82460 * 8 7 6 10 10 C 1.46898 * 110.99682 * 185.83477 * 9 8 7 11 11 C 1.53006 * 109.47006 * 170.00115 * 10 9 8 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47309 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47510 * 119.99847 * 16 14 12 19 19 H 1.48506 * 109.47246 * 239.99882 * 16 14 12 20 20 C 1.46846 * 111.19864 * 61.73920 * 9 8 7 21 21 C 1.53033 * 109.52460 * 298.25500 * 20 9 8 22 22 H 1.09006 * 109.47589 * 305.51435 * 1 2 3 23 23 H 1.09003 * 109.47368 * 65.51018 * 1 2 3 24 24 H 1.08999 * 109.47477 * 185.51212 * 1 2 3 25 25 H 1.09004 * 109.47056 * 60.00083 * 5 2 1 26 26 H 1.09000 * 109.47185 * 299.99929 * 5 2 1 27 27 H 1.08994 * 109.52566 * 54.87347 * 6 5 2 28 28 H 1.09005 * 109.50073 * 57.67955 * 7 6 5 29 29 H 1.08991 * 109.50379 * 297.56469 * 7 6 5 30 30 H 1.08989 * 109.46624 * 180.80484 * 8 7 6 31 31 H 1.09002 * 109.45127 * 60.82884 * 8 7 6 32 32 H 1.09001 * 109.47392 * 50.00413 * 10 9 8 33 33 H 1.09001 * 109.47520 * 290.00136 * 10 9 8 34 34 H 1.09001 * 109.47002 * 299.99782 * 11 10 9 35 35 H 1.08993 * 109.46955 * 60.00219 * 11 10 9 36 36 H 0.96996 * 120.00505 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.46555 * 58.27646 * 20 9 8 38 38 H 1.09001 * 109.46296 * 178.24247 * 20 9 8 39 39 H 1.08997 * 109.50475 * 299.23909 * 21 20 9 40 40 H 1.09002 * 109.50799 * 179.12007 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2666 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8183 1.7984 7 6 4.0237 -1.3225 3.2088 8 6 5.5398 -1.4597 3.3663 9 7 6.0541 -2.4006 2.3630 10 6 7.4843 -2.6632 2.5720 11 6 7.9257 -3.8237 1.6779 12 6 9.3927 -4.0935 1.8928 13 1 9.9542 -3.4966 2.5963 14 6 10.0184 -5.1016 1.1904 15 7 9.3349 -5.8281 0.3334 16 14 11.8369 -5.4355 1.4563 17 1 12.3724 -4.4860 2.4648 18 1 12.0191 -6.8275 1.9405 19 1 12.5654 -5.2581 0.1744 20 6 5.8020 -1.9144 1.0005 21 6 4.2938 -1.7909 0.7725 22 1 -0.3634 0.5970 0.8365 23 1 -0.3634 0.4260 -0.9352 24 1 -0.3634 -1.0229 0.0987 25 1 1.7610 -1.7369 1.6665 26 1 1.7610 -0.1170 2.4043 27 1 4.1438 0.1695 1.6571 28 1 3.5525 -2.2932 3.3633 29 1 3.6444 -0.6122 3.9434 30 1 5.7690 -1.8320 4.3646 31 1 6.0090 -0.4860 3.2251 32 1 7.6572 -2.9230 3.6164 33 1 8.0581 -1.7715 2.3197 34 1 7.3519 -4.7154 1.9303 35 1 7.7529 -3.5639 0.6336 36 1 9.7750 -6.5370 -0.1610 37 1 6.2701 -0.9386 0.8706 38 1 6.2217 -2.6171 0.2806 39 1 3.8269 -2.7689 0.8885 40 1 4.1073 -1.4151 -0.2336 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381561771.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:03 Heat of formation + Delta-G solvation = -81.638116 kcal Electronic energy + Delta-G solvation = -19820.074205 eV Core-core repulsion = 16761.671199 eV Total energy + Delta-G solvation = -3058.403006 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.96114 -37.16487 -36.22326 -35.05857 -32.87108 -30.71856 -30.31947 -29.72982 -27.60163 -24.32408 -23.06174 -22.20536 -20.12665 -19.55182 -19.03933 -16.95511 -16.46053 -16.30757 -16.23308 -15.11224 -14.69503 -14.51456 -14.43132 -13.89567 -13.71138 -13.55622 -13.34006 -13.17644 -12.67957 -12.49116 -12.24980 -12.15140 -12.01172 -11.69792 -11.35992 -11.28627 -11.01235 -10.96186 -10.86671 -10.79703 -10.51288 -10.30825 -9.96526 -9.73589 -9.28912 -9.06001 -8.29584 -7.67062 -5.96071 -3.98327 -0.26276 2.51304 3.33619 3.39696 3.40899 3.44862 3.73922 4.28854 4.37225 4.42241 4.44498 4.59055 4.68088 4.80688 5.11347 5.24963 5.29924 5.35077 5.39804 5.46278 5.63007 5.78036 5.86771 5.91367 6.01766 6.10499 6.25628 6.33659 6.42617 6.58257 6.59838 7.01319 7.55500 7.63764 7.84718 7.94609 8.12565 8.47481 9.09184 9.65139 11.15313 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.036911 B = 0.003459 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.409230 B = 8092.853719 C = 8515.936189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.660 4.660 2 S 2.416 3.584 3 O -0.942 6.942 4 O -0.930 6.930 5 C -0.600 4.600 6 C -0.077 4.077 7 C -0.100 4.100 8 C 0.052 3.948 9 N -0.539 5.539 10 C 0.063 3.937 11 C 0.027 3.973 12 C -0.521 4.521 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.892 5.892 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.055 3.945 21 C -0.139 4.139 22 H 0.125 0.875 23 H 0.127 0.873 24 H 0.128 0.872 25 H 0.134 0.866 26 H 0.130 0.870 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.027 0.973 32 H 0.060 0.940 33 H 0.019 0.981 34 H 0.024 0.976 35 H 0.018 0.982 36 H 0.260 0.740 37 H 0.027 0.973 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.035 11.929 3.209 23.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.598 3.402 3 O -0.939 6.939 4 O -0.927 6.927 5 C -0.730 4.730 6 C -0.096 4.096 7 C -0.139 4.139 8 C -0.077 4.077 9 N -0.264 5.264 10 C -0.064 4.064 11 C -0.011 4.011 12 C -0.560 4.560 13 H 0.072 0.928 14 C -0.144 4.144 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.073 4.073 21 C -0.177 4.177 22 H 0.144 0.856 23 H 0.146 0.854 24 H 0.147 0.853 25 H 0.153 0.847 26 H 0.148 0.852 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.043 0.957 35 H 0.036 0.964 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.110 0.890 39 H 0.099 0.901 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.713 11.655 2.473 23.034 hybrid contribution 0.739 0.226 0.675 1.026 sum -18.974 11.881 3.148 22.607 Atomic orbital electron populations 1.30315 1.27616 1.11459 1.11528 1.08022 0.77925 0.75959 0.78260 1.93598 1.78886 1.34727 1.86723 1.93618 1.78145 1.66637 1.54319 1.30357 1.06456 1.13870 1.22313 1.20993 0.89169 1.00882 0.98604 1.21580 0.96527 1.01510 0.94279 1.22067 0.94195 0.94563 0.96836 1.62040 1.18742 1.43655 1.01915 1.22324 0.83820 0.99196 1.01037 1.19114 0.95354 0.92376 0.94214 1.21234 0.94834 1.16459 1.23478 0.92794 1.24995 0.98065 0.96065 0.95239 1.69979 1.35894 1.21083 1.26210 0.86548 0.85503 0.78047 0.77941 1.19813 1.21022 1.21050 1.22077 0.94483 0.98900 0.91818 1.22135 0.96891 1.00169 0.98478 0.85597 0.85432 0.85341 0.84722 0.85204 0.90084 0.90699 0.91830 0.90860 0.95519 0.92136 0.96256 0.95713 0.96374 0.93067 0.95496 0.88984 0.90137 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.81 10.62 101.05 1.07 -1.73 16 2 S 2.42 20.08 5.16 -107.50 -0.55 19.53 16 3 O -0.94 -11.44 18.10 -57.83 -1.05 -12.49 16 4 O -0.93 -11.49 15.53 -57.83 -0.90 -12.38 16 5 C -0.60 -4.27 5.27 37.16 0.20 -4.07 16 6 C -0.08 -0.88 2.25 -90.49 -0.20 -1.08 16 7 C -0.10 -1.15 5.38 -26.65 -0.14 -1.29 16 8 C 0.05 0.76 5.46 -3.83 -0.02 0.74 16 9 N -0.54 -9.92 4.66 -234.67 -1.09 -11.01 16 10 C 0.06 1.36 4.90 -3.82 -0.02 1.34 16 11 C 0.03 0.71 4.90 -27.88 -0.14 0.57 16 12 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 13 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 16 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 C 0.06 0.98 5.29 -3.84 -0.02 0.96 16 21 C -0.14 -2.00 4.94 -26.65 -0.13 -2.13 16 22 H 0.13 0.29 8.14 -51.92 -0.42 -0.13 16 23 H 0.13 0.51 8.14 -51.92 -0.42 0.09 16 24 H 0.13 0.34 8.14 -51.92 -0.42 -0.09 16 25 H 0.13 0.71 8.14 -51.92 -0.42 0.28 16 26 H 0.13 0.55 8.14 -51.92 -0.42 0.12 16 27 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.03 8.01 -51.94 -0.42 0.61 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 1.28 7.99 -51.93 -0.41 0.86 16 33 H 0.02 0.42 8.12 -51.93 -0.42 -0.01 16 34 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.02 0.50 6.43 -51.93 -0.33 0.17 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.09 1.84 6.21 -51.93 -0.32 1.52 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.09 1.23 5.60 -51.93 -0.29 0.94 16 LS Contribution 327.28 15.07 4.93 4.93 Total: -1.00 -36.30 327.28 -9.58 -45.87 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -6.81 Total: -4.49 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 0.18 Total: -20.41 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: -0.36 Total: -37.46 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -1.94 Total: -24.87 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 20.08 SS G_CDS: -0.55 Total: 19.53 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -36.30 -9.58 -45.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381561771.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.764 kcal (2) G-P(sol) polarization free energy of solvation -36.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds