Wall clock time and date at job start Mon Mar 30 2020 01:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42101 * 108.57551 * 2 1 4 4 O 1.42094 * 108.57958 * 228.97499 * 2 1 3 5 5 C 1.81404 * 101.92055 * 114.48541 * 2 1 3 6 6 C 1.52997 * 109.46805 * 180.02562 * 5 2 1 7 7 C 1.53125 * 109.52222 * 175.00059 * 6 5 2 8 8 C 1.53033 * 109.28287 * 177.61979 * 7 6 5 9 9 N 1.46851 * 109.52231 * 300.82460 * 8 7 6 10 10 C 1.46898 * 110.99682 * 185.83477 * 9 8 7 11 11 C 1.53006 * 109.47006 * 170.00115 * 10 9 8 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99819 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00046 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00192 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.47309 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47510 * 119.99847 * 16 14 12 19 19 H 1.48506 * 109.47246 * 239.99882 * 16 14 12 20 20 C 1.46846 * 111.19864 * 61.73920 * 9 8 7 21 21 C 1.53033 * 109.52460 * 298.25500 * 20 9 8 22 22 H 1.09006 * 109.47589 * 305.51435 * 1 2 3 23 23 H 1.09003 * 109.47368 * 65.51018 * 1 2 3 24 24 H 1.08999 * 109.47477 * 185.51212 * 1 2 3 25 25 H 1.09004 * 109.47056 * 60.00083 * 5 2 1 26 26 H 1.09000 * 109.47185 * 299.99929 * 5 2 1 27 27 H 1.08994 * 109.52566 * 54.87347 * 6 5 2 28 28 H 1.09005 * 109.50073 * 57.67955 * 7 6 5 29 29 H 1.08991 * 109.50379 * 297.56469 * 7 6 5 30 30 H 1.08989 * 109.46624 * 180.80484 * 8 7 6 31 31 H 1.09002 * 109.45127 * 60.82884 * 8 7 6 32 32 H 1.09001 * 109.47392 * 50.00413 * 10 9 8 33 33 H 1.09001 * 109.47520 * 290.00136 * 10 9 8 34 34 H 1.09001 * 109.47002 * 299.99782 * 11 10 9 35 35 H 1.08993 * 109.46955 * 60.00219 * 11 10 9 36 36 H 0.96996 * 120.00505 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.46555 * 58.27646 * 20 9 8 38 38 H 1.09001 * 109.46296 * 178.24247 * 20 9 8 39 39 H 1.08997 * 109.50475 * 299.23909 * 21 20 9 40 40 H 1.09002 * 109.50799 * 179.12007 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2666 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8183 1.7984 7 6 4.0237 -1.3225 3.2088 8 6 5.5398 -1.4597 3.3663 9 7 6.0541 -2.4006 2.3630 10 6 7.4843 -2.6632 2.5720 11 6 7.9257 -3.8237 1.6779 12 6 9.3927 -4.0935 1.8928 13 1 9.9542 -3.4966 2.5963 14 6 10.0184 -5.1016 1.1904 15 7 9.3349 -5.8281 0.3334 16 14 11.8369 -5.4355 1.4563 17 1 12.3724 -4.4860 2.4648 18 1 12.0191 -6.8275 1.9405 19 1 12.5654 -5.2581 0.1744 20 6 5.8020 -1.9144 1.0005 21 6 4.2938 -1.7909 0.7725 22 1 -0.3634 0.5970 0.8365 23 1 -0.3634 0.4260 -0.9352 24 1 -0.3634 -1.0229 0.0987 25 1 1.7610 -1.7369 1.6665 26 1 1.7610 -0.1170 2.4043 27 1 4.1438 0.1695 1.6571 28 1 3.5525 -2.2932 3.3633 29 1 3.6444 -0.6122 3.9434 30 1 5.7690 -1.8320 4.3646 31 1 6.0090 -0.4860 3.2251 32 1 7.6572 -2.9230 3.6164 33 1 8.0581 -1.7715 2.3197 34 1 7.3519 -4.7154 1.9303 35 1 7.7529 -3.5639 0.6336 36 1 9.7750 -6.5370 -0.1610 37 1 6.2701 -0.9386 0.8706 38 1 6.2217 -2.6171 0.2806 39 1 3.8269 -2.7689 0.8885 40 1 4.1073 -1.4151 -0.2336 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381561771.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:03 Heat of formation + Delta-G solvation = -109.683651 kcal Electronic energy + Delta-G solvation = -19821.290350 eV Core-core repulsion = 16761.671199 eV Total energy + Delta-G solvation = -3059.619152 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.19792 -37.92288 -37.01446 -36.43781 -34.85899 -32.05567 -31.63737 -30.38634 -28.90235 -26.15486 -24.34033 -23.52718 -21.82446 -20.71661 -19.69842 -18.62174 -17.59511 -17.08099 -16.97667 -16.55980 -16.38205 -16.08369 -15.42687 -15.23142 -14.68724 -14.47576 -14.32233 -13.99416 -13.86473 -13.74054 -13.51761 -13.16296 -13.00993 -12.93562 -12.87923 -12.78031 -12.43770 -12.13142 -12.06187 -12.00481 -11.85363 -11.76914 -11.55094 -11.25670 -11.05721 -10.79856 -10.54253 -9.18026 -8.20511 -6.32241 -0.84251 1.39293 1.40087 1.53416 1.97754 2.39698 2.80799 3.05895 3.12541 3.20483 3.57353 3.68625 3.84848 4.15089 4.16792 4.26126 4.30043 4.32827 4.44398 4.54294 4.57716 4.64621 4.68072 4.79666 4.91848 4.97395 5.01367 5.04418 5.08326 5.17926 5.24902 5.41533 5.46807 5.66377 5.78397 6.09789 6.32792 6.35693 6.85134 7.36844 8.91916 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.036911 B = 0.003459 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.409230 B = 8092.853719 C = 8515.936189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.635 4.635 2 S 2.405 3.595 3 O -0.992 6.992 4 O -0.985 6.985 5 C -0.588 4.588 6 C -0.082 4.082 7 C -0.094 4.094 8 C 0.044 3.956 9 N -0.547 5.547 10 C 0.078 3.922 11 C 0.035 3.965 12 C -0.545 4.545 13 H 0.060 0.940 14 C -0.001 4.001 15 N -0.932 5.932 16 Si 0.969 3.031 17 H -0.261 1.261 18 H -0.276 1.276 19 H -0.279 1.279 20 C 0.054 3.946 21 C -0.136 4.136 22 H 0.156 0.844 23 H 0.132 0.868 24 H 0.153 0.847 25 H 0.160 0.840 26 H 0.172 0.828 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.015 0.985 34 H -0.007 1.007 35 H -0.009 1.009 36 H 0.264 0.736 37 H 0.024 0.976 38 H 0.053 0.947 39 H 0.079 0.921 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.855 12.781 5.317 25.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.788 4.788 2 S 2.594 3.406 3 O -0.989 6.989 4 O -0.982 6.982 5 C -0.718 4.718 6 C -0.101 4.101 7 C -0.132 4.132 8 C -0.083 4.083 9 N -0.272 5.272 10 C -0.050 4.050 11 C -0.002 4.002 12 C -0.583 4.583 13 H 0.078 0.922 14 C -0.198 4.198 15 N -0.572 5.572 16 Si 0.793 3.207 17 H -0.185 1.185 18 H -0.201 1.201 19 H -0.204 1.204 20 C -0.075 4.075 21 C -0.173 4.173 22 H 0.175 0.825 23 H 0.151 0.849 24 H 0.172 0.828 25 H 0.178 0.822 26 H 0.190 0.810 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.119 0.881 30 H 0.100 0.900 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.033 0.967 34 H 0.012 0.988 35 H 0.009 0.991 36 H 0.073 0.927 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.097 0.903 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -21.506 12.530 4.576 25.307 hybrid contribution 1.212 -0.047 0.018 1.213 sum -20.294 12.483 4.594 24.265 Atomic orbital electron populations 1.30068 1.21496 1.13924 1.13291 1.07876 0.80146 0.74370 0.78193 1.93536 1.81198 1.36744 1.87407 1.93553 1.80585 1.67357 1.56745 1.30230 1.03252 1.16175 1.22188 1.20961 0.92281 0.99405 0.97476 1.21597 0.93734 1.02867 0.95028 1.22277 0.96723 0.93540 0.95782 1.61980 1.16403 1.45746 1.03069 1.21977 0.86139 0.96926 0.99938 1.18936 0.94540 0.93012 0.93733 1.21657 0.95976 1.16888 1.23792 0.92191 1.25998 1.03480 0.95673 0.94689 1.70122 1.38234 1.21686 1.27126 0.85351 0.78879 0.78268 0.78221 1.18526 1.20141 1.20434 1.22037 0.97116 0.97417 0.90889 1.22088 0.94253 1.01294 0.99713 0.82529 0.84924 0.82847 0.82158 0.80984 0.90574 0.90271 0.88054 0.89998 0.95359 0.91400 0.96660 0.98826 0.99080 0.92745 0.95808 0.92826 0.90253 0.90160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -2.80 10.62 113.37 1.20 -1.60 16 2 S 2.40 36.65 5.16 -56.49 -0.29 36.36 16 3 O -0.99 -23.77 18.10 -127.37 -2.30 -26.07 16 4 O -0.99 -24.88 15.53 -127.37 -1.98 -26.86 16 5 C -0.59 -6.24 5.27 71.98 0.38 -5.86 16 6 C -0.08 -1.71 2.25 -10.71 -0.02 -1.73 16 7 C -0.09 -1.86 5.38 30.65 0.16 -1.69 16 8 C 0.04 1.24 5.46 86.32 0.47 1.71 16 9 N -0.55 -20.61 4.66 -896.37 -4.17 -24.79 16 10 C 0.08 3.46 4.90 86.31 0.42 3.89 16 11 C 0.04 1.97 4.90 29.85 0.15 2.11 16 12 C -0.54 -32.17 9.11 25.60 0.23 -31.94 16 13 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 14 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 15 N -0.93 -58.50 13.29 21.45 0.28 -58.22 16 16 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 17 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 C 0.05 2.01 5.29 86.32 0.46 2.47 16 21 C -0.14 -3.99 4.94 30.65 0.15 -3.84 16 22 H 0.16 -0.16 8.14 -2.39 -0.02 -0.18 16 23 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.15 0.03 8.14 -2.39 -0.02 0.01 16 25 H 0.16 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.17 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.10 1.32 8.14 -2.39 -0.02 1.31 16 30 H 0.08 2.14 8.01 -2.39 -0.02 2.12 16 31 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 2.89 7.99 -2.39 -0.02 2.87 16 33 H 0.02 0.68 8.12 -2.39 -0.02 0.66 16 34 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 35 H -0.01 -0.55 6.43 -2.39 -0.02 -0.57 16 36 H 0.26 15.46 8.31 -92.71 -0.77 14.68 16 37 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.05 2.37 6.21 -2.39 -0.01 2.36 16 39 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.08 2.46 5.60 -2.39 -0.01 2.44 16 Total: -1.00 -83.90 327.28 -1.38 -85.27 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: 0.99 Total: 2.93 kcal Atomic # 6 Polarization: -40.12 SS G_CDS: 4.07 Total: -36.05 kcal Atomic # 7 Polarization: -79.12 SS G_CDS: -3.89 Total: -83.01 kcal Atomic # 8 Polarization: -48.65 SS G_CDS: -4.28 Total: -52.93 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 16 Polarization: 36.65 SS G_CDS: -0.29 Total: 36.36 kcal Total: -83.90 -1.38 -85.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381561771.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.411 kcal (2) G-P(sol) polarization free energy of solvation -83.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds