Wall clock time and date at job start Mon Mar 30 2020 01:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 119.99630 * 2 1 4 4 H 1.48506 * 109.46934 * 269.99697 * 3 2 1 5 5 H 1.48498 * 109.47302 * 30.00083 * 3 2 1 6 6 H 1.48495 * 109.46755 * 149.99997 * 3 2 1 7 7 C 1.37874 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99978 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99722 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46657 * 179.97438 * 9 7 2 11 11 C 1.46499 * 119.99933 * 90.00327 * 10 9 7 12 12 C 1.50700 * 109.47465 * 84.03983 * 11 10 9 13 13 C 1.38679 * 120.41688 * 95.93630 * 12 11 10 14 14 C 1.38625 * 118.42017 * 180.02562 * 13 12 11 15 15 C 1.38231 * 119.16025 * 0.02562 * 14 13 12 16 16 N 1.31859 * 120.76314 * 359.97438 * 15 14 13 17 17 C 1.31888 * 121.72411 * 359.70891 * 16 15 14 18 18 C 1.34782 * 119.99806 * 269.99626 * 10 9 7 19 19 O 1.21281 * 119.99938 * 4.82924 * 18 10 9 20 20 C 1.50702 * 119.99540 * 184.82667 * 18 10 9 21 21 H 1.08992 * 112.95857 * 46.93530 * 20 18 10 22 22 C 1.53931 * 113.76077 * 275.28686 * 20 18 10 23 23 C 1.53941 * 86.34125 * 269.40693 * 22 20 18 24 24 N 1.47960 * 113.75616 * 178.58180 * 20 18 10 25 25 H 0.96998 * 119.99929 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47165 * 60.00430 * 9 7 2 27 27 H 1.09002 * 109.47113 * 299.99477 * 9 7 2 28 28 H 1.08998 * 109.47147 * 324.03777 * 11 10 9 29 29 H 1.09002 * 109.46645 * 204.04026 * 11 10 9 30 30 H 1.08000 * 120.78879 * 0.02699 * 13 12 11 31 31 H 1.07997 * 120.42314 * 179.97438 * 14 13 12 32 32 H 1.07998 * 119.61789 * 180.02562 * 15 14 13 33 33 H 1.08003 * 119.61232 * 180.31154 * 17 16 15 34 34 H 1.09005 * 113.73235 * 23.76062 * 22 20 18 35 35 H 1.08998 * 113.73637 * 154.94166 * 22 20 18 36 36 H 1.09005 * 113.75710 * 90.59832 * 23 22 20 37 37 H 1.08996 * 113.75851 * 221.84718 * 23 22 20 38 38 H 1.00900 * 110.99991 * 202.52373 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.6792 -4.1693 1.2693 12 6 1.6854 -5.1815 1.7781 13 6 1.8659 -6.5326 1.5224 14 6 0.9260 -7.4275 2.0096 15 6 -0.1525 -6.9469 2.7284 16 7 -0.2919 -5.6550 2.9523 17 6 0.5856 -4.7757 2.5095 18 6 2.6411 -4.1248 -1.1667 19 8 2.3162 -3.6089 -2.2152 20 6 3.5344 -5.3385 -1.1690 21 1 3.1739 -6.1330 -0.5157 22 6 5.0267 -5.0106 -0.9813 23 6 5.0992 -4.9233 -2.5165 24 7 3.9054 -5.8031 -2.5239 25 1 -0.4850 0.8400 -0.0004 26 1 0.6249 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8903 28 1 2.7878 -3.3678 1.9998 29 1 3.6437 -4.6531 1.1146 30 1 2.7184 -6.8792 0.9572 31 1 1.0344 -8.4868 1.8291 32 1 -0.8889 -7.6376 3.1118 33 1 0.4404 -3.7258 2.7170 34 1 5.2072 -4.0603 -0.4788 35 1 5.6065 -5.8313 -0.5590 36 1 4.9108 -3.9239 -2.9089 37 1 5.9903 -5.3857 -2.9410 38 1 4.1730 -6.7759 -2.5119 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000384823080.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:09 Heat of formation + Delta-G solvation = 48.133364 kcal Electronic energy + Delta-G solvation = -21526.476986 eV Core-core repulsion = 18370.550094 eV Total energy + Delta-G solvation = -3155.926893 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.51928 -39.77372 -37.53736 -35.26965 -32.99839 -32.16138 -31.20217 -28.39076 -27.03839 -26.62194 -25.56571 -23.49993 -22.91615 -22.13314 -20.85609 -18.18742 -17.49020 -16.72529 -16.44996 -16.16868 -15.83739 -15.25713 -15.15639 -14.51937 -14.16014 -13.98375 -13.65229 -13.27861 -13.17455 -12.92904 -12.61977 -12.48128 -12.14317 -11.93051 -11.60509 -11.17678 -11.16135 -10.97617 -10.73452 -10.59395 -10.18834 -9.76336 -9.68840 -9.32990 -9.10562 -8.88114 -8.43875 -8.29617 -7.74242 -6.04689 -4.09808 1.18865 1.34916 3.22579 3.31183 3.37622 3.38646 3.63113 3.94900 4.24333 4.43323 4.47341 4.58635 4.70027 4.82339 4.94835 4.99882 5.10122 5.20905 5.29861 5.38778 5.46614 5.52507 5.55091 5.68862 5.82011 5.88915 5.96292 5.99358 6.14433 6.15362 6.34045 6.79923 6.99542 7.33796 7.42376 7.50231 7.91000 8.09972 8.21124 8.34217 8.89405 9.08054 9.55405 11.03286 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.012540 B = 0.007463 C = 0.005096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.308059 B = 3750.868477 C = 5493.039555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.249 3.751 10 N -0.593 5.593 11 C 0.153 3.847 12 C -0.147 4.147 13 C -0.073 4.073 14 C -0.178 4.178 15 C 0.092 3.908 16 N -0.484 5.484 17 C 0.122 3.878 18 C 0.526 3.474 19 O -0.511 6.511 20 C 0.019 3.981 21 H 0.096 0.904 22 C -0.180 4.180 23 C 0.023 3.977 24 N -0.634 5.634 25 H 0.264 0.736 26 H 0.042 0.958 27 H 0.034 0.966 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.151 0.849 33 H 0.162 0.838 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.303 -15.375 4.900 18.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.565 4.565 8 H 0.076 0.924 9 C 0.130 3.870 10 N -0.325 5.325 11 C 0.028 3.972 12 C -0.151 4.151 13 C -0.099 4.099 14 C -0.197 4.197 15 C -0.065 4.065 16 N -0.192 5.192 17 C -0.035 4.035 18 C 0.311 3.689 19 O -0.385 6.385 20 C -0.095 4.095 21 H 0.114 0.886 22 C -0.219 4.219 23 C -0.107 4.107 24 N -0.262 5.262 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.114 0.886 29 H 0.095 0.905 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.169 0.831 33 H 0.179 0.821 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.091 0.909 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.653 -14.311 4.229 16.339 hybrid contribution 1.832 0.079 0.279 1.855 sum 8.485 -14.232 4.508 17.172 Atomic orbital electron populations 1.69933 1.05965 1.27053 1.50186 1.24928 0.94856 0.99171 0.95047 0.86516 0.79632 0.83145 0.78221 1.20577 1.21151 1.19952 1.21393 0.93309 0.90547 1.51289 0.92436 1.19299 0.87263 0.81976 0.98442 1.48195 1.46259 1.34945 1.03134 1.20318 0.93797 0.95020 0.88083 1.21494 0.99205 0.95266 0.99109 1.21503 0.98660 0.92767 0.96998 1.22063 0.96399 1.00701 1.00575 1.22749 0.96181 0.92333 0.95273 1.67746 1.28366 1.02928 1.20197 1.22900 0.88701 0.99783 0.92132 1.19545 0.81181 0.83948 0.84252 1.90692 1.56548 1.60256 1.30954 1.23128 0.95390 0.98173 0.92827 0.88609 1.24465 0.94758 1.03516 0.99111 1.23659 0.93021 1.00285 0.93749 1.64898 1.26874 1.07103 1.27277 0.92672 0.94027 0.94839 0.88597 0.90478 0.85369 0.85112 0.83124 0.82074 0.90265 0.89340 0.87823 0.90935 0.85054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.56 9.39 -34.44 -0.32 -14.88 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.25 6.35 5.14 -5.19 -0.03 6.33 16 10 N -0.59 -12.10 2.44 -176.43 -0.43 -12.53 16 11 C 0.15 2.34 5.35 -5.19 -0.03 2.32 16 12 C -0.15 -2.13 5.47 -104.48 -0.57 -2.71 16 13 C -0.07 -0.87 9.18 -39.28 -0.36 -1.24 16 14 C -0.18 -1.96 10.11 -39.44 -0.40 -2.36 16 15 C 0.09 1.15 11.18 -17.54 -0.20 0.95 16 16 N -0.48 -7.60 10.36 -13.25 -0.14 -7.73 16 17 C 0.12 1.95 10.44 -17.55 -0.18 1.76 16 18 C 0.53 10.92 6.99 -10.98 -0.08 10.85 16 19 O -0.51 -13.25 16.11 5.56 0.09 -13.16 16 20 C 0.02 0.28 3.47 -67.81 -0.24 0.04 16 21 H 0.10 1.18 4.86 -51.93 -0.25 0.92 16 22 C -0.18 -2.13 6.93 -25.79 -0.18 -2.31 16 23 C 0.02 0.30 8.53 -2.57 -0.02 0.27 16 24 N -0.63 -9.14 8.05 -110.57 -0.89 -10.03 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.04 1.23 7.49 -51.93 -0.39 0.84 16 27 H 0.03 0.85 6.89 -51.93 -0.36 0.50 16 28 H 0.10 1.48 8.10 -51.93 -0.42 1.06 16 29 H 0.08 0.96 5.80 -51.93 -0.30 0.66 16 30 H 0.13 1.22 5.93 -52.49 -0.31 0.91 16 31 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 32 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.16 2.65 7.35 -52.48 -0.39 2.27 16 34 H 0.08 1.03 8.01 -51.93 -0.42 0.62 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.10 1.67 8.08 -51.93 -0.42 1.25 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.33 3.61 8.89 -39.29 -0.35 3.26 16 LS Contribution 318.68 15.07 4.80 4.80 Total: -1.00 -34.61 318.68 -8.39 -43.00 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -4.84 Total: 3.91 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -2.70 Total: 0.70 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.72 Total: -55.87 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.09 Total: -13.16 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.61 -8.39 -43.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384823080.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.133 kcal (2) G-P(sol) polarization free energy of solvation -34.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds