Wall clock time and date at job start Mon Mar 30 2020 01:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86804 * 119.99630 * 2 1 4 4 H 1.48506 * 109.46934 * 269.99697 * 3 2 1 5 5 H 1.48498 * 109.47302 * 30.00083 * 3 2 1 6 6 H 1.48495 * 109.46755 * 149.99997 * 3 2 1 7 7 C 1.37874 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99978 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99722 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46657 * 179.97438 * 9 7 2 11 11 C 1.46499 * 119.99933 * 90.00327 * 10 9 7 12 12 C 1.50700 * 109.47465 * 84.03983 * 11 10 9 13 13 C 1.38679 * 120.41688 * 95.93630 * 12 11 10 14 14 C 1.38625 * 118.42017 * 180.02562 * 13 12 11 15 15 C 1.38231 * 119.16025 * 0.02562 * 14 13 12 16 16 N 1.31859 * 120.76314 * 359.97438 * 15 14 13 17 17 C 1.31888 * 121.72411 * 359.70891 * 16 15 14 18 18 C 1.34782 * 119.99806 * 269.99626 * 10 9 7 19 19 O 1.21281 * 119.99938 * 4.82924 * 18 10 9 20 20 C 1.50702 * 119.99540 * 184.82667 * 18 10 9 21 21 H 1.08992 * 112.95857 * 46.93530 * 20 18 10 22 22 C 1.53931 * 113.76077 * 275.28686 * 20 18 10 23 23 C 1.53941 * 86.34125 * 269.40693 * 22 20 18 24 24 N 1.47960 * 113.75616 * 178.58180 * 20 18 10 25 25 H 0.96998 * 119.99929 * 0.02562 * 1 2 3 26 26 H 1.08995 * 109.47165 * 60.00430 * 9 7 2 27 27 H 1.09002 * 109.47113 * 299.99477 * 9 7 2 28 28 H 1.08998 * 109.47147 * 324.03777 * 11 10 9 29 29 H 1.09002 * 109.46645 * 204.04026 * 11 10 9 30 30 H 1.08000 * 120.78879 * 0.02699 * 13 12 11 31 31 H 1.07997 * 120.42314 * 179.97438 * 14 13 12 32 32 H 1.07998 * 119.61789 * 180.02562 * 15 14 13 33 33 H 1.08003 * 119.61232 * 180.31154 * 17 16 15 34 34 H 1.09005 * 113.73235 * 23.76062 * 22 20 18 35 35 H 1.08998 * 113.73637 * 154.94166 * 22 20 18 36 36 H 1.09005 * 113.75710 * 90.59832 * 23 22 20 37 37 H 1.08996 * 113.75851 * 221.84718 * 23 22 20 38 38 H 1.00900 * 110.99991 * 202.52373 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.6792 -4.1693 1.2693 12 6 1.6854 -5.1815 1.7781 13 6 1.8659 -6.5326 1.5224 14 6 0.9260 -7.4275 2.0096 15 6 -0.1525 -6.9469 2.7284 16 7 -0.2919 -5.6550 2.9523 17 6 0.5856 -4.7757 2.5095 18 6 2.6411 -4.1248 -1.1667 19 8 2.3162 -3.6089 -2.2152 20 6 3.5344 -5.3385 -1.1690 21 1 3.1739 -6.1330 -0.5157 22 6 5.0267 -5.0106 -0.9813 23 6 5.0992 -4.9233 -2.5165 24 7 3.9054 -5.8031 -2.5239 25 1 -0.4850 0.8400 -0.0004 26 1 0.6249 -2.5571 -0.8897 27 1 0.6242 -2.5567 0.8903 28 1 2.7878 -3.3678 1.9998 29 1 3.6437 -4.6531 1.1146 30 1 2.7184 -6.8792 0.9572 31 1 1.0344 -8.4868 1.8291 32 1 -0.8889 -7.6376 3.1118 33 1 0.4404 -3.7258 2.7170 34 1 5.2072 -4.0603 -0.4788 35 1 5.6065 -5.8313 -0.5590 36 1 4.9108 -3.9239 -2.9089 37 1 5.9903 -5.3857 -2.9410 38 1 4.1730 -6.7759 -2.5119 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384823080.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:08 Heat of formation + Delta-G solvation = 21.093715 kcal Electronic energy + Delta-G solvation = -21527.649514 eV Core-core repulsion = 18370.550094 eV Total energy + Delta-G solvation = -3157.099420 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.77838 -40.87157 -38.95986 -36.88419 -34.96014 -33.43532 -32.38926 -30.16184 -28.16239 -27.85549 -27.06561 -24.86172 -24.41863 -23.28026 -22.14423 -19.66722 -18.78332 -18.42439 -17.78871 -17.31250 -17.16256 -16.88804 -16.41627 -16.19227 -15.51097 -15.27718 -14.80743 -14.58058 -14.34489 -14.17651 -14.10260 -13.75394 -13.55670 -13.41420 -13.21176 -12.82304 -12.73102 -12.45329 -12.25493 -12.17661 -11.82330 -11.71596 -10.78854 -10.68440 -10.63559 -10.38796 -9.97531 -9.50012 -9.41179 -8.22239 -6.37003 0.14375 0.35782 1.35959 1.39255 1.48630 1.73435 2.18788 2.40849 2.89432 3.07643 3.11608 3.41224 3.55468 3.62805 3.76183 3.86848 3.92714 4.10310 4.19776 4.40952 4.45903 4.53655 4.66089 4.71187 4.77234 4.85068 4.89450 4.91020 5.03843 5.10282 5.18687 5.21781 5.29199 5.54904 5.80487 5.82047 6.05285 6.49447 6.70318 6.76447 7.05687 7.28787 7.48827 8.85019 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.012540 B = 0.007463 C = 0.005096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.308059 B = 3750.868477 C = 5493.039555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.282 1.282 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.539 4.539 8 H 0.056 0.944 9 C 0.267 3.733 10 N -0.595 5.595 11 C 0.153 3.847 12 C -0.159 4.159 13 C -0.068 4.068 14 C -0.163 4.163 15 C 0.083 3.917 16 N -0.517 5.517 17 C 0.093 3.907 18 C 0.513 3.487 19 O -0.580 6.580 20 C 0.022 3.978 21 H 0.130 0.870 22 C -0.157 4.157 23 C 0.017 3.983 24 N -0.659 5.659 25 H 0.266 0.734 26 H -0.013 1.013 27 H 0.025 0.975 28 H 0.086 0.914 29 H 0.118 0.882 30 H 0.165 0.835 31 H 0.176 0.824 32 H 0.181 0.819 33 H 0.135 0.865 34 H 0.064 0.936 35 H 0.143 0.857 36 H 0.058 0.942 37 H 0.111 0.889 38 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.090 -18.402 5.764 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.791 3.209 4 H -0.209 1.209 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.577 4.577 8 H 0.074 0.926 9 C 0.146 3.854 10 N -0.326 5.326 11 C 0.030 3.970 12 C -0.162 4.162 13 C -0.094 4.094 14 C -0.182 4.182 15 C -0.074 4.074 16 N -0.227 5.227 17 C -0.063 4.063 18 C 0.301 3.699 19 O -0.458 6.458 20 C -0.092 4.092 21 H 0.148 0.852 22 C -0.196 4.196 23 C -0.113 4.113 24 N -0.290 5.290 25 H 0.075 0.925 26 H 0.005 0.995 27 H 0.043 0.957 28 H 0.104 0.896 29 H 0.136 0.864 30 H 0.182 0.818 31 H 0.193 0.807 32 H 0.198 0.802 33 H 0.152 0.848 34 H 0.083 0.917 35 H 0.161 0.839 36 H 0.077 0.923 37 H 0.129 0.871 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 9.477 -17.383 5.141 20.455 hybrid contribution 0.884 0.900 -0.004 1.261 sum 10.360 -16.483 5.137 20.135 Atomic orbital electron populations 1.70068 1.07649 1.28087 1.51078 1.25868 0.95747 1.03082 0.94497 0.85434 0.78939 0.78474 0.78087 1.20859 1.20107 1.18217 1.21683 0.93320 0.91730 1.51010 0.92557 1.18673 0.87723 0.83743 0.95255 1.48136 1.45113 1.33785 1.05551 1.20534 0.95704 0.95313 0.85406 1.21341 0.98583 0.96516 0.99740 1.21902 0.99832 0.91324 0.96389 1.22534 0.94678 1.02730 0.98253 1.23387 0.97526 0.91456 0.95071 1.67679 1.28933 1.04586 1.21452 1.22666 0.90291 0.99115 0.94224 1.20782 0.80929 0.85232 0.82959 1.90650 1.59177 1.62758 1.33264 1.22951 0.96037 0.95940 0.94235 0.85213 1.24465 0.92350 1.04792 0.97946 1.23600 0.93967 0.98412 0.95289 1.64703 1.28068 1.08957 1.27303 0.92499 0.99511 0.95721 0.89564 0.86431 0.81820 0.80673 0.80199 0.84766 0.91669 0.83941 0.92315 0.87117 0.82157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.41 13.29 21.45 0.28 -57.13 16 2 C 0.01 0.41 5.46 84.65 0.46 0.87 16 3 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 4 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 7 C -0.54 -31.26 9.39 25.60 0.24 -31.02 16 8 H 0.06 3.20 7.81 -2.91 -0.02 3.17 16 9 C 0.27 14.65 5.14 85.63 0.44 15.09 16 10 N -0.59 -25.10 2.44 -830.48 -2.03 -27.13 16 11 C 0.15 4.62 5.35 85.63 0.46 5.08 16 12 C -0.16 -4.45 5.47 -19.77 -0.11 -4.56 16 13 C -0.07 -1.37 9.18 22.47 0.21 -1.17 16 14 C -0.16 -2.87 10.11 22.36 0.23 -2.64 16 15 C 0.08 1.88 11.18 84.69 0.95 2.83 16 16 N -0.52 -16.37 10.36 -195.84 -2.03 -18.40 16 17 C 0.09 3.11 10.44 84.67 0.88 4.00 16 18 C 0.51 21.71 6.99 87.66 0.61 22.32 16 19 O -0.58 -31.84 16.11 -3.03 -0.05 -31.89 16 20 C 0.02 0.59 3.47 44.27 0.15 0.74 16 21 H 0.13 2.53 4.86 -2.39 -0.01 2.51 16 22 C -0.16 -3.08 6.93 31.24 0.22 -2.86 16 23 C 0.02 0.41 8.53 86.34 0.74 1.14 16 24 N -0.66 -17.31 8.05 -503.73 -4.06 -21.36 16 25 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 26 H -0.01 -0.86 7.49 -2.39 -0.02 -0.88 16 27 H 0.02 1.38 6.89 -2.39 -0.02 1.36 16 28 H 0.09 2.74 8.10 -2.39 -0.02 2.72 16 29 H 0.12 2.54 5.80 -2.39 -0.01 2.52 16 30 H 0.16 2.06 5.93 -2.91 -0.02 2.04 16 31 H 0.18 1.58 8.06 -2.91 -0.02 1.55 16 32 H 0.18 2.84 8.06 -2.91 -0.02 2.81 16 33 H 0.13 4.97 7.35 -2.91 -0.02 4.94 16 34 H 0.06 1.50 8.01 -2.38 -0.02 1.48 16 35 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.06 1.93 8.08 -2.38 -0.02 1.91 16 37 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.36 6.17 8.89 -89.69 -0.80 5.37 16 Total: -1.00 -84.26 318.68 -0.09 -84.34 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.29 Total: 14.25 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 5.48 Total: 9.83 kcal Atomic # 7 Polarization: -116.18 SS G_CDS: -7.83 Total: -124.01 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.05 Total: -31.89 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -84.26 -0.09 -84.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384823080.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.437 kcal (2) G-P(sol) polarization free energy of solvation -84.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds