Wall clock time and date at job start Mon Mar 30 2020 01:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42100 * 108.57581 * 2 1 4 4 O 1.42105 * 108.57753 * 228.97616 * 2 1 3 5 5 C 1.81401 * 101.92125 * 114.48669 * 2 1 3 6 6 C 1.52999 * 109.46951 * 179.97438 * 5 2 1 7 7 C 1.52999 * 109.46926 * 179.97438 * 6 5 2 8 8 N 1.46899 * 109.47036 * 179.97438 * 7 6 5 9 9 C 1.46847 * 110.99862 * 66.05037 * 8 7 6 10 10 C 1.53044 * 109.51335 * 174.15436 * 9 8 7 11 11 C 1.53119 * 109.27589 * 59.18419 * 10 9 8 12 12 C 1.53120 * 109.16202 * 302.34077 * 11 10 9 13 13 H 1.08996 * 109.50004 * 297.72216 * 12 11 10 14 14 C 1.50697 * 109.50290 * 177.63586 * 12 11 10 15 15 H 1.07997 * 120.00495 * 240.00286 * 14 12 11 16 16 C 1.37880 * 119.99487 * 60.00267 * 14 12 11 17 17 N 1.31518 * 120.00428 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 119.99610 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47208 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46738 * 120.00332 * 18 16 14 21 21 H 1.48501 * 109.47145 * 240.00117 * 18 16 14 22 22 C 1.46847 * 110.99299 * 301.84195 * 8 7 6 23 23 H 1.08996 * 109.47268 * 305.51364 * 1 2 3 24 24 H 1.09007 * 109.47047 * 65.51099 * 1 2 3 25 25 H 1.08996 * 109.46969 * 185.51163 * 1 2 3 26 26 H 1.08999 * 109.46742 * 60.00002 * 5 2 1 27 27 H 1.08996 * 109.46808 * 300.00469 * 5 2 1 28 28 H 1.08999 * 109.47343 * 60.00434 * 6 5 2 29 29 H 1.08997 * 109.47101 * 300.00194 * 6 5 2 30 30 H 1.09004 * 109.47161 * 60.00228 * 7 6 5 31 31 H 1.08996 * 109.47358 * 300.00580 * 7 6 5 32 32 H 1.09002 * 109.46448 * 54.14158 * 9 8 7 33 33 H 1.08994 * 109.45958 * 294.16523 * 9 8 7 34 34 H 1.09000 * 109.49745 * 179.12223 * 10 9 8 35 35 H 1.08999 * 109.49729 * 299.20033 * 10 9 8 36 36 H 1.08993 * 109.52284 * 62.25342 * 11 10 9 37 37 H 1.09003 * 109.51690 * 182.37761 * 11 10 9 38 38 H 0.97001 * 119.99568 * 179.97438 * 17 16 14 39 39 H 1.09005 * 109.46836 * 65.83946 * 22 8 7 40 40 H 1.08995 * 109.45748 * 305.85482 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 6 3.7055 -0.8195 1.7979 7 6 4.0215 -1.4394 3.1605 8 7 5.4778 -1.5206 3.3356 9 6 6.0737 -0.1808 3.4147 10 6 7.5639 -0.3026 3.7417 11 6 8.2551 -1.1255 2.6510 12 6 7.5839 -2.4985 2.5561 13 1 7.7062 -3.0293 3.5002 14 6 8.2203 -3.2939 1.4455 15 1 7.6213 -3.6362 0.6146 16 6 9.5674 -3.5844 1.4901 17 7 10.2968 -3.1680 2.5022 18 14 10.3561 -4.5710 0.1138 19 1 9.3271 -4.9180 -0.8990 20 1 11.4256 -3.7623 -0.5246 21 1 10.9429 -5.8162 0.6708 22 6 6.0933 -2.3131 2.2635 23 1 -0.3633 0.5969 0.8365 24 1 -0.3633 0.4260 -0.9353 25 1 -0.3633 -1.0229 0.0987 26 1 1.7611 -1.7369 1.6664 27 1 1.7610 -0.1171 2.4042 28 1 4.1336 0.1815 1.7465 29 1 4.1328 -1.4383 1.0089 30 1 3.5934 -2.4405 3.2123 31 1 3.5942 -0.8203 3.9492 32 1 5.5760 0.3926 4.1968 33 1 5.9521 0.3277 2.4584 34 1 8.0093 0.6913 3.7849 35 1 7.6857 -0.7983 4.7048 36 1 8.1669 -0.6100 1.6948 37 1 9.3085 -1.2505 2.9017 38 1 11.2445 -3.3728 2.5336 39 1 5.9716 -1.7943 1.3126 40 1 5.6097 -3.2884 2.2096 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397611989.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:38 Heat of formation + Delta-G solvation = -79.943080 kcal Electronic energy + Delta-G solvation = -20031.640889 eV Core-core repulsion = 16973.311385 eV Total energy + Delta-G solvation = -3058.329504 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.62853 -37.12574 -36.17420 -34.92375 -32.83670 -31.10398 -29.91397 -29.83671 -26.15383 -24.92367 -23.22312 -21.51448 -20.85626 -19.03176 -18.32483 -16.94335 -16.43006 -16.35382 -16.10675 -15.13699 -14.87413 -14.36742 -14.09090 -13.98332 -13.57805 -13.52637 -13.05126 -12.74709 -12.54911 -12.22529 -12.13498 -12.12797 -11.89901 -11.88048 -11.42938 -11.24819 -11.02190 -10.89196 -10.70503 -10.61365 -10.41130 -10.02404 -9.79068 -9.44124 -9.01994 -8.66478 -8.27162 -7.65052 -5.94000 -3.99890 -0.23754 2.54183 3.33357 3.41372 3.43854 3.45940 3.77064 4.30494 4.41375 4.45734 4.48598 4.70593 4.74090 5.13353 5.23596 5.28121 5.36225 5.42262 5.61588 5.74277 5.81832 5.90725 6.08425 6.19694 6.31521 6.43718 6.53301 6.73739 6.78717 6.99186 7.24373 7.42293 7.65324 7.78040 7.82801 8.11285 8.20778 8.51684 9.04481 9.64560 11.12012 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.022521 B = 0.004365 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.966587 B = 6413.391182 C = 7164.749296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.416 3.584 3 O -0.941 6.941 4 O -0.937 6.937 5 C -0.598 4.598 6 C -0.156 4.156 7 C 0.066 3.934 8 N -0.535 5.535 9 C 0.057 3.943 10 C -0.118 4.118 11 C -0.112 4.112 12 C 0.054 3.946 13 H 0.034 0.966 14 C -0.514 4.514 15 H 0.054 0.946 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.061 3.939 23 H 0.126 0.874 24 H 0.127 0.873 25 H 0.127 0.873 26 H 0.132 0.868 27 H 0.130 0.870 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.027 0.973 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.030 0.970 37 H 0.091 0.909 38 H 0.258 0.742 39 H 0.025 0.975 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.305 6.556 0.388 20.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.598 3.402 3 O -0.938 6.938 4 O -0.934 6.934 5 C -0.729 4.729 6 C -0.196 4.196 7 C -0.064 4.064 8 N -0.258 5.258 9 C -0.071 4.071 10 C -0.156 4.156 11 C -0.150 4.150 12 C 0.035 3.965 13 H 0.052 0.948 14 C -0.553 4.553 15 H 0.073 0.927 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.066 4.066 23 H 0.145 0.855 24 H 0.145 0.855 25 H 0.146 0.854 26 H 0.151 0.849 27 H 0.149 0.851 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.049 0.951 37 H 0.109 0.891 38 H 0.068 0.932 39 H 0.043 0.957 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.458 6.611 0.233 19.608 hybrid contribution -0.416 -0.354 -0.920 1.070 sum -18.874 6.257 -0.688 19.896 Atomic orbital electron populations 1.30309 1.27594 1.11374 1.11530 1.08046 0.78035 0.75959 0.78188 1.93598 1.78830 1.34685 1.86694 1.93621 1.78692 1.66877 1.54208 1.30223 1.06671 1.13701 1.22287 1.22149 0.90121 1.03968 1.03365 1.22180 0.90326 1.00617 0.93319 1.62255 1.01601 1.14673 1.47259 1.22101 0.96666 0.89452 0.98872 1.21683 0.93338 0.99358 1.01198 1.21663 1.02738 0.95952 0.94633 1.18677 0.87242 0.93145 0.97457 0.94794 1.21199 0.93808 1.33503 1.06748 0.92728 1.24932 0.97332 0.95852 0.95727 1.69905 1.06675 1.46056 1.30134 0.86579 0.79364 0.79920 0.82385 1.19798 1.21107 1.21075 1.22399 0.98658 0.95385 0.90175 0.85517 0.85481 0.85433 0.84942 0.85141 0.90181 0.89457 0.90727 0.91195 0.92368 0.95434 0.93497 0.92112 0.95104 0.89068 0.93156 0.95667 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.10 10.62 101.05 1.07 -2.03 16 2 S 2.42 22.10 5.36 -107.50 -0.58 21.53 16 3 O -0.94 -12.39 18.10 -57.83 -1.05 -13.43 16 4 O -0.94 -12.90 18.10 -57.83 -1.05 -13.94 16 5 C -0.60 -4.70 5.81 37.16 0.22 -4.48 16 6 C -0.16 -1.99 4.52 -26.73 -0.12 -2.11 16 7 C 0.07 0.89 5.36 -3.83 -0.02 0.87 16 8 N -0.54 -9.65 4.86 -234.67 -1.14 -10.79 16 9 C 0.06 1.00 5.05 -3.83 -0.02 0.98 16 10 C -0.12 -2.32 6.09 -26.65 -0.16 -2.49 16 11 C -0.11 -2.68 5.02 -26.61 -0.13 -2.81 16 12 C 0.05 1.35 2.26 -91.69 -0.21 1.14 16 13 H 0.03 0.95 8.14 -51.93 -0.42 0.52 16 14 C -0.51 -14.24 8.57 -34.44 -0.30 -14.54 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 17 N -0.89 -25.56 11.35 55.43 0.63 -24.93 16 18 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 C 0.06 1.28 4.06 -3.83 -0.02 1.27 16 23 H 0.13 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.13 0.56 8.14 -51.92 -0.42 0.14 16 25 H 0.13 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.13 0.73 8.14 -51.92 -0.42 0.31 16 27 H 0.13 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.08 1.07 6.68 -51.93 -0.35 0.72 16 29 H 0.09 1.27 6.50 -51.93 -0.34 0.94 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 32 H 0.06 0.88 8.06 -51.93 -0.42 0.46 16 33 H 0.03 0.48 6.76 -51.93 -0.35 0.13 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.03 0.54 6.61 -51.93 -0.34 0.20 16 40 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 LS Contribution 325.70 15.07 4.91 4.91 Total: -1.00 -35.16 325.70 -9.80 -44.96 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -6.73 Total: -2.30 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: 0.22 Total: -22.53 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.51 Total: -35.72 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -2.09 Total: -27.38 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 22.10 SS G_CDS: -0.58 Total: 21.53 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.16 -9.80 -44.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397611989.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.987 kcal (2) G-P(sol) polarization free energy of solvation -35.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds