Wall clock time and date at job start Mon Mar 30 2020 01:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42100 * 108.57581 * 2 1 4 4 O 1.42105 * 108.57753 * 228.97616 * 2 1 3 5 5 C 1.81401 * 101.92125 * 114.48669 * 2 1 3 6 6 C 1.52999 * 109.46951 * 179.97438 * 5 2 1 7 7 C 1.52999 * 109.46926 * 179.97438 * 6 5 2 8 8 N 1.46899 * 109.47036 * 179.97438 * 7 6 5 9 9 C 1.46847 * 110.99862 * 66.05037 * 8 7 6 10 10 C 1.53044 * 109.51335 * 174.15436 * 9 8 7 11 11 C 1.53119 * 109.27589 * 59.18419 * 10 9 8 12 12 C 1.53120 * 109.16202 * 302.34077 * 11 10 9 13 13 H 1.08996 * 109.50004 * 297.72216 * 12 11 10 14 14 C 1.50697 * 109.50290 * 177.63586 * 12 11 10 15 15 H 1.07997 * 120.00495 * 240.00286 * 14 12 11 16 16 C 1.37880 * 119.99487 * 60.00267 * 14 12 11 17 17 N 1.31518 * 120.00428 * 0.02562 * 16 14 12 18 18 Si 1.86804 * 119.99610 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47208 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46738 * 120.00332 * 18 16 14 21 21 H 1.48501 * 109.47145 * 240.00117 * 18 16 14 22 22 C 1.46847 * 110.99299 * 301.84195 * 8 7 6 23 23 H 1.08996 * 109.47268 * 305.51364 * 1 2 3 24 24 H 1.09007 * 109.47047 * 65.51099 * 1 2 3 25 25 H 1.08996 * 109.46969 * 185.51163 * 1 2 3 26 26 H 1.08999 * 109.46742 * 60.00002 * 5 2 1 27 27 H 1.08996 * 109.46808 * 300.00469 * 5 2 1 28 28 H 1.08999 * 109.47343 * 60.00434 * 6 5 2 29 29 H 1.08997 * 109.47101 * 300.00194 * 6 5 2 30 30 H 1.09004 * 109.47161 * 60.00228 * 7 6 5 31 31 H 1.08996 * 109.47358 * 300.00580 * 7 6 5 32 32 H 1.09002 * 109.46448 * 54.14158 * 9 8 7 33 33 H 1.08994 * 109.45958 * 294.16523 * 9 8 7 34 34 H 1.09000 * 109.49745 * 179.12223 * 10 9 8 35 35 H 1.08999 * 109.49729 * 299.20033 * 10 9 8 36 36 H 1.08993 * 109.52284 * 62.25342 * 11 10 9 37 37 H 1.09003 * 109.51690 * 182.37761 * 11 10 9 38 38 H 0.97001 * 119.99568 * 179.97438 * 17 16 14 39 39 H 1.09005 * 109.46836 * 65.83946 * 22 8 7 40 40 H 1.08995 * 109.45748 * 305.85482 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 6 3.7055 -0.8195 1.7979 7 6 4.0215 -1.4394 3.1605 8 7 5.4778 -1.5206 3.3356 9 6 6.0737 -0.1808 3.4147 10 6 7.5639 -0.3026 3.7417 11 6 8.2551 -1.1255 2.6510 12 6 7.5839 -2.4985 2.5561 13 1 7.7062 -3.0293 3.5002 14 6 8.2203 -3.2939 1.4455 15 1 7.6213 -3.6362 0.6146 16 6 9.5674 -3.5844 1.4901 17 7 10.2968 -3.1680 2.5022 18 14 10.3561 -4.5710 0.1138 19 1 9.3271 -4.9180 -0.8990 20 1 11.4256 -3.7623 -0.5246 21 1 10.9429 -5.8162 0.6708 22 6 6.0933 -2.3131 2.2635 23 1 -0.3633 0.5969 0.8365 24 1 -0.3633 0.4260 -0.9353 25 1 -0.3633 -1.0229 0.0987 26 1 1.7611 -1.7369 1.6664 27 1 1.7610 -0.1171 2.4042 28 1 4.1336 0.1815 1.7465 29 1 4.1328 -1.4383 1.0089 30 1 3.5934 -2.4405 3.2123 31 1 3.5942 -0.8203 3.9492 32 1 5.5760 0.3926 4.1968 33 1 5.9521 0.3277 2.4584 34 1 8.0093 0.6913 3.7849 35 1 7.6857 -0.7983 4.7048 36 1 8.1669 -0.6100 1.6948 37 1 9.3085 -1.2505 2.9017 38 1 11.2445 -3.3728 2.5336 39 1 5.9716 -1.7943 1.3126 40 1 5.6097 -3.2884 2.2096 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397611989.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:37 Heat of formation + Delta-G solvation = -107.441839 kcal Electronic energy + Delta-G solvation = -20032.833325 eV Core-core repulsion = 16973.311385 eV Total energy + Delta-G solvation = -3059.521940 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.11364 -37.96579 -37.01830 -36.39373 -34.53944 -32.51491 -31.68753 -30.35021 -27.33849 -26.92466 -24.48318 -23.21117 -22.29805 -20.00637 -19.76110 -18.48667 -17.59427 -17.17797 -17.00970 -16.69778 -16.08076 -15.98511 -15.52604 -15.21364 -14.80027 -14.35331 -14.07872 -14.00427 -13.87868 -13.53130 -13.31760 -13.12372 -13.01603 -12.94659 -12.88960 -12.73219 -12.68007 -12.48526 -11.96421 -11.92349 -11.73130 -11.49485 -11.46761 -11.32510 -10.85322 -10.65723 -10.38384 -9.07931 -8.08823 -6.22725 -0.88385 1.38842 1.40626 1.52282 1.94411 2.42227 2.78026 3.14795 3.15506 3.18039 3.75641 3.81820 4.10299 4.15396 4.21305 4.24445 4.29766 4.35341 4.47062 4.61656 4.65321 4.72181 4.82548 4.90513 4.92269 4.99884 5.05855 5.08835 5.18545 5.23870 5.40307 5.52837 5.63279 5.96368 6.11775 6.20485 6.39011 6.45758 6.90119 7.45166 8.95934 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.022521 B = 0.004365 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.966587 B = 6413.391182 C = 7164.749296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.629 4.629 2 S 2.404 3.596 3 O -0.994 6.994 4 O -0.999 6.999 5 C -0.585 4.585 6 C -0.163 4.163 7 C 0.064 3.936 8 N -0.547 5.547 9 C 0.060 3.940 10 C -0.112 4.112 11 C -0.106 4.106 12 C 0.050 3.950 13 H -0.001 1.001 14 C -0.537 4.537 15 H 0.048 0.952 16 C 0.015 3.985 17 N -0.915 5.915 18 Si 0.953 3.047 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.277 1.277 22 C 0.076 3.924 23 H 0.158 0.842 24 H 0.133 0.867 25 H 0.155 0.845 26 H 0.163 0.837 27 H 0.171 0.829 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.025 0.975 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.017 0.983 37 H 0.058 0.942 38 H 0.260 0.740 39 H 0.016 0.984 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.382 6.917 1.207 23.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.782 4.782 2 S 2.593 3.407 3 O -0.991 6.991 4 O -0.996 6.996 5 C -0.716 4.716 6 C -0.203 4.203 7 C -0.065 4.065 8 N -0.269 5.269 9 C -0.068 4.068 10 C -0.150 4.150 11 C -0.144 4.144 12 C 0.031 3.969 13 H 0.017 0.983 14 C -0.576 4.576 15 H 0.067 0.933 16 C -0.184 4.184 17 N -0.554 5.554 18 Si 0.778 3.222 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.203 1.203 22 C -0.052 4.052 23 H 0.177 0.823 24 H 0.152 0.848 25 H 0.173 0.827 26 H 0.181 0.819 27 H 0.189 0.811 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.043 0.957 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.034 0.966 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.505 6.983 1.039 22.634 hybrid contribution 0.454 -0.470 -1.118 1.295 sum -21.051 6.513 -0.078 22.036 Atomic orbital electron populations 1.30024 1.20721 1.14052 1.13411 1.07882 0.80507 0.74227 0.78039 1.93531 1.81354 1.36802 1.87401 1.93548 1.81395 1.67727 1.56930 1.30088 1.03269 1.16255 1.21985 1.22067 0.93741 1.02562 1.01912 1.22347 0.87232 1.02213 0.94697 1.62170 1.04341 1.14703 1.45723 1.22109 0.95105 0.89597 0.99987 1.21602 0.95113 0.99416 0.98894 1.21474 1.01234 0.96135 0.95566 1.18613 0.90293 0.93053 0.94920 0.98256 1.21566 0.94430 1.34204 1.07380 0.93321 1.25703 0.97861 0.96842 0.97988 1.70040 1.06882 1.46833 1.31645 0.85593 0.78376 0.78615 0.79593 1.19405 1.20635 1.20292 1.22022 0.96176 0.96030 0.90933 0.82335 0.84846 0.82674 0.81896 0.81121 0.91330 0.92448 0.89588 0.87926 0.88668 0.95681 0.91387 0.92798 0.96387 0.92372 0.93053 0.96584 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -3.13 10.62 113.37 1.20 -1.92 16 2 S 2.40 40.92 5.36 -56.49 -0.30 40.62 16 3 O -0.99 -26.07 18.10 -127.37 -2.31 -28.38 16 4 O -1.00 -28.17 18.10 -127.37 -2.31 -30.47 16 5 C -0.58 -7.16 5.81 71.98 0.42 -6.75 16 6 C -0.16 -3.91 4.52 30.59 0.14 -3.77 16 7 C 0.06 1.56 5.36 86.30 0.46 2.02 16 8 N -0.55 -19.11 4.86 -896.35 -4.35 -23.47 16 9 C 0.06 1.99 5.05 86.33 0.44 2.43 16 10 C -0.11 -4.42 6.09 30.65 0.19 -4.23 16 11 C -0.11 -5.28 5.02 30.67 0.15 -5.12 16 12 C 0.05 2.63 2.26 -11.49 -0.03 2.61 16 13 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 14 C -0.54 -30.94 8.57 25.60 0.22 -30.72 16 15 H 0.05 2.78 7.74 -2.91 -0.02 2.75 16 16 C 0.01 0.85 5.30 84.65 0.45 1.30 16 17 N -0.91 -54.36 11.35 21.45 0.24 -54.12 16 18 Si 0.95 45.17 29.54 68.60 2.03 47.19 16 19 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 22 C 0.08 3.29 4.06 86.33 0.35 3.64 16 23 H 0.16 -0.09 8.14 -2.39 -0.02 -0.11 16 24 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.15 0.05 8.14 -2.39 -0.02 0.04 16 26 H 0.16 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.17 0.75 8.14 -2.39 -0.02 0.74 16 28 H 0.07 1.79 6.68 -2.39 -0.02 1.77 16 29 H 0.06 1.71 6.50 -2.39 -0.02 1.69 16 30 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.10 1.89 8.06 -2.39 -0.02 1.87 16 32 H 0.10 2.53 8.06 -2.39 -0.02 2.51 16 33 H 0.02 0.86 6.76 -2.39 -0.02 0.84 16 34 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 3.26 6.15 -2.39 -0.01 3.24 16 38 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 39 H 0.02 0.72 6.61 -2.38 -0.02 0.70 16 40 H 0.06 2.50 8.12 -2.39 -0.02 2.48 16 Total: -1.00 -82.03 325.70 -2.01 -84.04 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: 1.00 Total: 5.10 kcal Atomic # 6 Polarization: -44.51 SS G_CDS: 3.99 Total: -40.52 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -4.11 Total: -77.58 kcal Atomic # 8 Polarization: -54.24 SS G_CDS: -4.61 Total: -58.85 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Atomic # 16 Polarization: 40.92 SS G_CDS: -0.30 Total: 40.62 kcal Total: -82.03 -2.01 -84.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397611989.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.403 kcal (2) G-P(sol) polarization free energy of solvation -82.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds