Wall clock time and date at job start Mon Mar 30 2020 01:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42100 * 108.58051 * 2 1 4 4 O 1.42100 * 108.57549 * 228.97162 * 2 1 3 5 5 C 1.81400 * 101.92113 * 114.48819 * 2 1 3 6 6 C 1.53001 * 109.47267 * 179.97438 * 5 2 1 7 7 C 1.52998 * 109.47409 * 179.97438 * 6 5 2 8 8 N 1.46897 * 109.47268 * 180.02562 * 7 6 5 9 9 C 1.46854 * 110.99665 * 293.95495 * 8 7 6 10 10 C 1.53037 * 109.51886 * 185.84309 * 9 8 7 11 11 C 1.53126 * 109.27801 * 300.81620 * 10 9 8 12 12 C 1.53124 * 109.15878 * 57.65645 * 11 10 9 13 13 H 1.08999 * 109.50059 * 62.28737 * 12 11 10 14 14 C 1.50696 * 109.50007 * 182.40592 * 12 11 10 15 15 H 1.07997 * 120.00077 * 120.00524 * 14 12 11 16 16 C 1.37872 * 120.00039 * 299.99707 * 14 12 11 17 17 N 1.31516 * 120.00157 * 180.02562 * 16 14 12 18 18 Si 1.86802 * 120.00148 * 0.02562 * 16 14 12 19 19 H 1.48497 * 109.47149 * 89.99426 * 18 16 14 20 20 H 1.48504 * 109.47101 * 209.99746 * 18 16 14 21 21 H 1.48493 * 109.47009 * 329.99562 * 18 16 14 22 22 C 1.46844 * 111.00090 * 58.16171 * 8 7 6 23 23 H 1.09000 * 109.47220 * 305.51417 * 1 2 3 24 24 H 1.09008 * 109.47288 * 65.51436 * 1 2 3 25 25 H 1.08999 * 109.47454 * 185.51155 * 1 2 3 26 26 H 1.08999 * 109.47332 * 59.99642 * 5 2 1 27 27 H 1.09004 * 109.47155 * 299.99878 * 5 2 1 28 28 H 1.08999 * 109.47199 * 59.99607 * 6 5 2 29 29 H 1.09004 * 109.46972 * 300.00037 * 6 5 2 30 30 H 1.08998 * 109.46651 * 59.99512 * 7 6 5 31 31 H 1.09003 * 109.46734 * 300.00278 * 7 6 5 32 32 H 1.08994 * 109.46310 * 65.82535 * 9 8 7 33 33 H 1.09004 * 109.45281 * 305.84691 * 9 8 7 34 34 H 1.09000 * 109.50480 * 180.88135 * 10 9 8 35 35 H 1.09002 * 109.53848 * 60.77851 * 10 9 8 36 36 H 1.08998 * 109.52297 * 177.56592 * 11 10 9 37 37 H 1.08999 * 109.51925 * 297.75795 * 11 10 9 38 38 H 0.96998 * 120.00706 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.46133 * 294.17882 * 22 8 7 40 40 H 1.09002 * 109.46165 * 54.15521 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2666 -0.8842 -1.0161 5 6 2.1887 -0.7357 1.6152 6 6 3.7054 -0.8196 1.7979 7 6 4.0215 -1.4395 3.1605 8 7 5.4777 -1.5196 3.3362 9 6 6.0724 -2.4602 2.3779 10 6 7.5625 -2.6280 2.6838 11 6 8.2550 -1.2657 2.5871 12 6 7.5852 -0.2913 3.5600 13 1 7.7077 -0.6542 4.5805 14 6 8.2222 1.0681 3.4287 15 1 7.6233 1.9196 3.1412 16 6 9.5695 1.2249 3.6757 17 7 10.1253 2.4114 3.5616 18 14 10.6056 -0.2479 4.1726 19 1 11.1573 -0.8977 2.9566 20 1 11.7215 0.2028 5.0426 21 1 9.7617 -1.2195 4.9134 22 6 6.0945 -0.1913 3.2288 23 1 -0.3633 0.5970 0.8365 24 1 -0.3634 0.4260 -0.9353 25 1 -0.3634 -1.0229 0.0987 26 1 1.7609 -1.7369 1.6665 27 1 1.7610 -0.1171 2.4043 28 1 4.1335 0.1814 1.7465 29 1 4.1327 -1.4385 1.0089 30 1 3.5933 -2.4405 3.2123 31 1 3.5942 -0.8203 3.9493 32 1 5.9506 -2.0735 1.3662 33 1 5.5738 -3.4260 2.4602 34 1 8.0070 -3.3141 1.9629 35 1 7.6852 -3.0280 3.6904 36 1 9.3082 -1.3732 2.8465 37 1 8.1665 -0.8835 1.5702 38 1 11.0732 2.5217 3.7350 39 1 5.9726 0.1847 2.2130 40 1 5.6121 0.4908 3.9289 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397611991.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:41 Heat of formation + Delta-G solvation = -71.987476 kcal Electronic energy + Delta-G solvation = -20103.001473 eV Core-core repulsion = 17045.016950 eV Total energy + Delta-G solvation = -3057.984523 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.86563 -37.14228 -36.19302 -35.13930 -32.81727 -31.47038 -30.28655 -29.92957 -26.44460 -24.93577 -23.48574 -21.59932 -20.91108 -19.04998 -18.59700 -17.00566 -16.58817 -16.45100 -16.23844 -15.40707 -15.14565 -14.40792 -14.16431 -13.98328 -13.64918 -13.54042 -13.38497 -13.01382 -12.60647 -12.42211 -12.24153 -12.15867 -12.14324 -12.03035 -11.74496 -11.27159 -11.17212 -11.08668 -10.75161 -10.75056 -10.34052 -10.04481 -9.91382 -9.65545 -9.08832 -8.89949 -8.47701 -7.82333 -6.02825 -4.01996 -0.25616 2.52253 3.31687 3.41991 3.42426 3.45807 3.75307 4.22028 4.38602 4.44670 4.46046 4.58312 4.71411 5.05074 5.15882 5.26817 5.28154 5.35097 5.43454 5.57214 5.63120 5.74136 5.85652 6.04873 6.09326 6.18300 6.30569 6.34763 6.50068 6.63122 6.82233 6.86380 7.22487 7.40052 7.57658 7.67093 7.88569 8.56252 9.00771 9.59872 11.10451 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.028330 B = 0.004315 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.104468 B = 6487.650621 C = 6979.026490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.416 3.584 3 O -0.935 6.935 4 O -0.941 6.941 5 C -0.599 4.599 6 C -0.157 4.157 7 C 0.067 3.933 8 N -0.539 5.539 9 C 0.057 3.943 10 C -0.120 4.120 11 C -0.124 4.124 12 C 0.019 3.981 13 H 0.035 0.965 14 C -0.514 4.514 15 H 0.073 0.927 16 C 0.070 3.930 17 N -0.902 5.902 18 Si 0.888 3.112 19 H -0.280 1.280 20 H -0.299 1.299 21 H -0.264 1.264 22 C 0.069 3.931 23 H 0.127 0.873 24 H 0.127 0.873 25 H 0.126 0.874 26 H 0.130 0.870 27 H 0.133 0.867 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.033 0.967 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.263 0.737 39 H 0.032 0.968 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.763 -9.789 -3.872 22.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.598 3.402 3 O -0.932 6.932 4 O -0.938 6.938 5 C -0.730 4.730 6 C -0.197 4.197 7 C -0.063 4.063 8 N -0.261 5.261 9 C -0.071 4.071 10 C -0.158 4.158 11 C -0.161 4.161 12 C 0.000 4.000 13 H 0.053 0.947 14 C -0.553 4.553 15 H 0.091 0.909 16 C -0.131 4.131 17 N -0.540 5.540 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.227 1.227 21 H -0.189 1.189 22 C -0.057 4.057 23 H 0.146 0.854 24 H 0.146 0.854 25 H 0.145 0.855 26 H 0.148 0.852 27 H 0.151 0.849 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.051 0.949 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.938 -9.557 -4.044 21.595 hybrid contribution -0.162 -0.653 -0.037 0.674 sum -19.100 -10.210 -4.081 22.038 Atomic orbital electron populations 1.30310 1.27560 1.11290 1.11653 1.08030 0.78051 0.76026 0.78070 1.93630 1.78655 1.34413 1.86528 1.93598 1.78857 1.67079 1.54295 1.30226 1.06521 1.13589 1.22631 1.22150 0.90334 1.04611 1.02606 1.22166 0.89786 1.00492 0.93887 1.62256 1.02050 1.11311 1.50526 1.22061 0.95807 0.95562 0.93665 1.21659 0.94219 0.98665 1.01255 1.22043 0.98635 0.94154 1.01313 1.19169 0.90326 0.95281 0.95205 0.94683 1.21010 0.94250 0.93145 1.46868 0.90886 1.24983 0.97851 0.95573 0.94688 1.69902 1.12053 1.22372 1.49716 0.86825 0.79716 0.83249 0.78330 1.20736 1.22675 1.18854 1.22184 0.96951 0.87181 0.99403 0.85407 0.85449 0.85538 0.85152 0.84876 0.89311 0.90153 0.91050 0.90486 0.94923 0.91811 0.92754 0.91839 0.93518 0.92477 0.92714 0.94931 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.95 10.62 101.05 1.07 -1.88 16 2 S 2.42 21.35 5.36 -107.50 -0.58 20.78 16 3 O -0.94 -12.73 18.10 -57.83 -1.05 -13.78 16 4 O -0.94 -12.05 18.10 -57.83 -1.05 -13.10 16 5 C -0.60 -4.38 5.81 37.16 0.22 -4.17 16 6 C -0.16 -1.88 4.52 -26.73 -0.12 -2.00 16 7 C 0.07 0.84 5.36 -3.83 -0.02 0.82 16 8 N -0.54 -8.98 4.86 -234.67 -1.14 -10.12 16 9 C 0.06 0.90 5.05 -3.83 -0.02 0.88 16 10 C -0.12 -2.13 6.09 -26.65 -0.16 -2.29 16 11 C -0.12 -2.71 4.73 -26.60 -0.13 -2.84 16 12 C 0.02 0.46 1.85 -91.69 -0.17 0.29 16 13 H 0.04 0.87 7.21 -51.93 -0.37 0.50 16 14 C -0.51 -14.54 9.15 -34.44 -0.31 -14.86 16 15 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 16 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 17 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 18 Si 0.89 22.34 24.35 -169.99 -4.14 18.20 16 19 H -0.28 -6.88 6.89 56.52 0.39 -6.49 16 20 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 21 H -0.26 -6.38 6.53 56.52 0.37 -6.01 16 22 C 0.07 1.39 4.06 -3.84 -0.02 1.38 16 23 H 0.13 0.35 8.14 -51.92 -0.42 -0.07 16 24 H 0.13 0.54 8.14 -51.92 -0.42 0.12 16 25 H 0.13 0.31 8.14 -51.92 -0.42 -0.11 16 26 H 0.13 0.58 8.14 -51.92 -0.42 0.16 16 27 H 0.13 0.67 8.14 -51.92 -0.42 0.25 16 28 H 0.09 1.23 6.50 -51.93 -0.34 0.90 16 29 H 0.08 1.00 6.68 -51.93 -0.35 0.65 16 30 H 0.07 0.75 8.06 -51.93 -0.42 0.33 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.03 0.52 6.75 -51.93 -0.35 0.17 16 33 H 0.06 0.85 8.06 -51.93 -0.42 0.43 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.05 1.08 3.34 -51.93 -0.17 0.91 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.03 0.66 6.61 -51.93 -0.34 0.32 16 40 H 0.07 1.36 8.12 -51.93 -0.42 0.94 16 LS Contribution 318.85 15.07 4.81 4.81 Total: -1.00 -36.94 318.85 -8.72 -45.66 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -6.59 Total: -2.56 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 0.24 Total: -22.70 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: -0.37 Total: -37.30 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -2.09 Total: -26.88 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.14 Total: 18.20 kcal Atomic # 16 Polarization: 21.35 SS G_CDS: -0.58 Total: 20.78 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -36.94 -8.72 -45.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397611991.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.329 kcal (2) G-P(sol) polarization free energy of solvation -36.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds