Wall clock time and date at job start Mon Mar 30 2020 01:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42100 * 108.58051 * 2 1 4 4 O 1.42100 * 108.57549 * 228.97162 * 2 1 3 5 5 C 1.81400 * 101.92113 * 114.48819 * 2 1 3 6 6 C 1.53001 * 109.47267 * 179.97438 * 5 2 1 7 7 C 1.52998 * 109.47409 * 179.97438 * 6 5 2 8 8 N 1.46897 * 109.47268 * 180.02562 * 7 6 5 9 9 C 1.46854 * 110.99665 * 293.95495 * 8 7 6 10 10 C 1.53037 * 109.51886 * 185.84309 * 9 8 7 11 11 C 1.53126 * 109.27801 * 300.81620 * 10 9 8 12 12 C 1.53124 * 109.15878 * 57.65645 * 11 10 9 13 13 H 1.08999 * 109.50059 * 62.28737 * 12 11 10 14 14 C 1.50696 * 109.50007 * 182.40592 * 12 11 10 15 15 H 1.07997 * 120.00077 * 120.00524 * 14 12 11 16 16 C 1.37872 * 120.00039 * 299.99707 * 14 12 11 17 17 N 1.31516 * 120.00157 * 180.02562 * 16 14 12 18 18 Si 1.86802 * 120.00148 * 0.02562 * 16 14 12 19 19 H 1.48497 * 109.47149 * 89.99426 * 18 16 14 20 20 H 1.48504 * 109.47101 * 209.99746 * 18 16 14 21 21 H 1.48493 * 109.47009 * 329.99562 * 18 16 14 22 22 C 1.46844 * 111.00090 * 58.16171 * 8 7 6 23 23 H 1.09000 * 109.47220 * 305.51417 * 1 2 3 24 24 H 1.09008 * 109.47288 * 65.51436 * 1 2 3 25 25 H 1.08999 * 109.47454 * 185.51155 * 1 2 3 26 26 H 1.08999 * 109.47332 * 59.99642 * 5 2 1 27 27 H 1.09004 * 109.47155 * 299.99878 * 5 2 1 28 28 H 1.08999 * 109.47199 * 59.99607 * 6 5 2 29 29 H 1.09004 * 109.46972 * 300.00037 * 6 5 2 30 30 H 1.08998 * 109.46651 * 59.99512 * 7 6 5 31 31 H 1.09003 * 109.46734 * 300.00278 * 7 6 5 32 32 H 1.08994 * 109.46310 * 65.82535 * 9 8 7 33 33 H 1.09004 * 109.45281 * 305.84691 * 9 8 7 34 34 H 1.09000 * 109.50480 * 180.88135 * 10 9 8 35 35 H 1.09002 * 109.53848 * 60.77851 * 10 9 8 36 36 H 1.08998 * 109.52297 * 177.56592 * 11 10 9 37 37 H 1.08999 * 109.51925 * 297.75795 * 11 10 9 38 38 H 0.96998 * 120.00706 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.46133 * 294.17882 * 22 8 7 40 40 H 1.09002 * 109.46165 * 54.15521 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2666 -0.8842 -1.0161 5 6 2.1887 -0.7357 1.6152 6 6 3.7054 -0.8196 1.7979 7 6 4.0215 -1.4395 3.1605 8 7 5.4777 -1.5196 3.3362 9 6 6.0724 -2.4602 2.3779 10 6 7.5625 -2.6280 2.6838 11 6 8.2550 -1.2657 2.5871 12 6 7.5852 -0.2913 3.5600 13 1 7.7077 -0.6542 4.5805 14 6 8.2222 1.0681 3.4287 15 1 7.6233 1.9196 3.1412 16 6 9.5695 1.2249 3.6757 17 7 10.1253 2.4114 3.5616 18 14 10.6056 -0.2479 4.1726 19 1 11.1573 -0.8977 2.9566 20 1 11.7215 0.2028 5.0426 21 1 9.7617 -1.2195 4.9134 22 6 6.0945 -0.1913 3.2288 23 1 -0.3633 0.5970 0.8365 24 1 -0.3634 0.4260 -0.9353 25 1 -0.3634 -1.0229 0.0987 26 1 1.7609 -1.7369 1.6665 27 1 1.7610 -0.1171 2.4043 28 1 4.1335 0.1814 1.7465 29 1 4.1327 -1.4385 1.0089 30 1 3.5933 -2.4405 3.2123 31 1 3.5942 -0.8203 3.9493 32 1 5.9506 -2.0735 1.3662 33 1 5.5738 -3.4260 2.4602 34 1 8.0070 -3.3141 1.9629 35 1 7.6852 -3.0280 3.6904 36 1 9.3082 -1.3732 2.8465 37 1 8.1665 -0.8835 1.5702 38 1 11.0732 2.5217 3.7350 39 1 5.9726 0.1847 2.2130 40 1 5.6121 0.4908 3.9289 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397611991.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:40 Heat of formation + Delta-G solvation = -102.870006 kcal Electronic energy + Delta-G solvation = -20104.340640 eV Core-core repulsion = 17045.016950 eV Total energy + Delta-G solvation = -3059.323690 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.25126 -37.97174 -37.02821 -36.49972 -34.61059 -32.83950 -31.99713 -30.35980 -27.59351 -26.84637 -24.66622 -23.06717 -22.38077 -20.13721 -19.76629 -18.84318 -17.71136 -17.18783 -17.11141 -16.87100 -16.15480 -15.82257 -15.62751 -15.29044 -15.07075 -14.76321 -14.13392 -14.03301 -13.88362 -13.80591 -13.41002 -13.15209 -13.03100 -13.00372 -12.95717 -12.89167 -12.61956 -12.31546 -11.96972 -11.90709 -11.80743 -11.54931 -11.47224 -11.31586 -11.00570 -10.80929 -10.61301 -9.13802 -8.30742 -6.34669 -0.88736 1.29738 1.35453 1.47253 1.94116 2.32551 2.77552 3.04899 3.08119 3.15023 3.74243 3.81230 4.00684 4.11506 4.12613 4.17411 4.22443 4.26889 4.40331 4.51890 4.57926 4.63791 4.72171 4.82825 4.85407 4.94664 4.97493 4.99716 5.04635 5.15667 5.21748 5.27458 5.45206 5.63483 5.72823 6.14633 6.29452 6.35889 6.73100 7.31105 8.86422 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.028330 B = 0.004315 C = 0.004011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.104468 B = 6487.650621 C = 6979.026490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.629 4.629 2 S 2.403 3.597 3 O -1.001 7.001 4 O -0.993 6.993 5 C -0.584 4.584 6 C -0.165 4.165 7 C 0.065 3.935 8 N -0.544 5.544 9 C 0.055 3.945 10 C -0.116 4.116 11 C -0.125 4.125 12 C 0.018 3.982 13 H 0.028 0.972 14 C -0.522 4.522 15 H 0.029 0.971 16 C 0.011 3.989 17 N -0.952 5.952 18 Si 0.955 3.045 19 H -0.269 1.269 20 H -0.299 1.299 21 H -0.245 1.245 22 C 0.082 3.918 23 H 0.154 0.846 24 H 0.132 0.868 25 H 0.159 0.841 26 H 0.173 0.827 27 H 0.162 0.838 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.028 0.972 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.035 0.965 37 H 0.043 0.957 38 H 0.265 0.735 39 H 0.017 0.983 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.427 -13.409 -2.980 26.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.782 4.782 2 S 2.592 3.408 3 O -0.998 6.998 4 O -0.990 6.990 5 C -0.715 4.715 6 C -0.205 4.205 7 C -0.064 4.064 8 N -0.267 5.267 9 C -0.073 4.073 10 C -0.153 4.153 11 C -0.162 4.162 12 C -0.001 4.001 13 H 0.046 0.954 14 C -0.560 4.560 15 H 0.048 0.952 16 C -0.185 4.185 17 N -0.592 5.592 18 Si 0.782 3.218 19 H -0.195 1.195 20 H -0.226 1.226 21 H -0.169 1.169 22 C -0.046 4.046 23 H 0.173 0.827 24 H 0.151 0.849 25 H 0.178 0.822 26 H 0.191 0.809 27 H 0.180 0.820 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.125 0.875 31 H 0.104 0.896 32 H 0.046 0.954 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.035 0.965 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.587 -13.184 -3.178 25.494 hybrid contribution 0.510 0.542 -0.314 0.808 sum -21.078 -12.642 -3.492 24.825 Atomic orbital electron populations 1.30026 1.20782 1.14180 1.13256 1.07910 0.80496 0.74196 0.78176 1.93554 1.81392 1.37374 1.87478 1.93530 1.81331 1.67505 1.56668 1.30078 1.03353 1.16496 1.21605 1.22093 0.93726 1.02466 1.02200 1.22345 0.87068 1.02804 0.94183 1.62197 1.04470 1.08895 1.51134 1.22162 0.94961 0.96975 0.93164 1.21647 0.95228 0.96056 1.02406 1.21946 0.98234 0.96418 0.99651 1.19094 0.92705 0.92936 0.95377 0.95377 1.21366 0.94298 0.94473 1.45891 0.95231 1.25885 0.99289 0.98581 0.94789 1.70059 1.12585 1.24947 1.51642 0.85748 0.77876 0.79756 0.78469 1.19489 1.22639 1.16867 1.21839 0.95020 0.89576 0.98182 0.82736 0.84922 0.82245 0.80906 0.81979 0.92734 0.91038 0.87463 0.89606 0.95415 0.87926 0.90077 0.91432 0.94674 0.93852 0.92566 0.96518 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -3.08 10.62 113.37 1.20 -1.88 16 2 S 2.40 40.49 5.36 -56.49 -0.30 40.19 16 3 O -1.00 -28.72 18.10 -127.37 -2.31 -31.03 16 4 O -0.99 -25.61 18.10 -127.37 -2.30 -27.92 16 5 C -0.58 -6.67 5.81 71.98 0.42 -6.25 16 6 C -0.16 -3.73 4.52 30.59 0.14 -3.59 16 7 C 0.06 1.42 5.36 86.30 0.46 1.89 16 8 N -0.54 -17.03 4.86 -896.36 -4.35 -21.38 16 9 C 0.05 1.58 5.05 86.32 0.44 2.01 16 10 C -0.12 -3.76 6.09 30.65 0.19 -3.58 16 11 C -0.12 -5.39 4.73 30.68 0.15 -5.25 16 12 C 0.02 0.87 1.85 -11.49 -0.02 0.85 16 13 H 0.03 1.39 7.21 -2.39 -0.02 1.37 16 14 C -0.52 -31.00 9.15 25.60 0.23 -30.77 16 15 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 16 C 0.01 0.68 5.45 84.65 0.46 1.14 16 17 N -0.95 -61.58 13.96 21.45 0.30 -61.28 16 18 Si 0.95 46.72 24.35 68.60 1.67 48.39 16 19 H -0.27 -12.56 6.89 99.48 0.69 -11.87 16 20 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 21 H -0.24 -11.14 6.53 99.48 0.65 -10.49 16 22 C 0.08 3.34 4.06 86.33 0.35 3.69 16 23 H 0.15 0.07 8.14 -2.39 -0.02 0.05 16 24 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.16 -0.14 8.14 -2.39 -0.02 -0.16 16 26 H 0.17 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.16 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 1.60 6.50 -2.39 -0.02 1.58 16 29 H 0.07 1.72 6.68 -2.38 -0.02 1.71 16 30 H 0.11 1.66 8.06 -2.39 -0.02 1.64 16 31 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.03 0.83 6.75 -2.39 -0.02 0.82 16 33 H 0.10 2.22 8.06 -2.38 -0.02 2.20 16 34 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.04 1.58 3.34 -2.39 -0.01 1.57 16 37 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 39 H 0.02 0.72 6.61 -2.39 -0.02 0.71 16 40 H 0.06 2.51 8.12 -2.39 -0.02 2.49 16 Total: -1.00 -87.25 318.85 -2.36 -89.60 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: 0.93 Total: 5.17 kcal Atomic # 6 Polarization: -45.76 SS G_CDS: 4.01 Total: -41.74 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -4.06 Total: -82.67 kcal Atomic # 8 Polarization: -54.34 SS G_CDS: -4.61 Total: -58.95 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.67 Total: 48.39 kcal Atomic # 16 Polarization: 40.49 SS G_CDS: -0.30 Total: 40.19 kcal Total: -87.25 -2.36 -89.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397611991.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.267 kcal (2) G-P(sol) polarization free energy of solvation -87.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds