Wall clock time and date at job start Mon Mar 30 2020 02:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99539 * 2 1 4 4 H 1.48508 * 109.46876 * 269.99699 * 3 2 1 5 5 H 1.48496 * 109.47444 * 29.99642 * 3 2 1 6 6 H 1.48496 * 109.46850 * 150.00087 * 3 2 1 7 7 C 1.37870 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00358 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00049 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47318 * 179.97438 * 9 7 2 11 11 C 1.53047 * 109.45891 * 175.00105 * 10 9 7 12 12 C 1.53201 * 109.30830 * 181.36917 * 11 10 9 13 13 N 1.46924 * 108.77972 * 305.36354 * 12 11 10 14 14 C 1.34771 * 120.63227 * 233.58817 * 13 12 11 15 15 O 1.21515 * 119.99834 * 7.62082 * 14 13 12 16 16 C 1.48145 * 120.00148 * 187.61596 * 14 13 12 17 17 C 1.39438 * 120.10124 * 189.28106 * 16 14 13 18 18 N 1.32076 * 119.87892 * 180.02562 * 17 16 14 19 19 C 1.32141 * 120.06691 * 359.73356 * 18 17 16 20 20 C 1.38727 * 120.19637 * 0.52308 * 19 18 17 21 21 N 1.31796 * 120.12375 * 359.47894 * 20 19 18 22 22 C 1.46924 * 118.73513 * 53.85796 * 13 12 11 23 23 C 1.53045 * 109.44882 * 295.06042 * 10 9 7 24 24 H 0.96998 * 120.00244 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47116 * 59.99523 * 9 7 2 26 26 H 1.09003 * 109.46941 * 300.00291 * 9 7 2 27 27 H 1.08996 * 109.46512 * 55.02563 * 10 9 7 28 28 H 1.08997 * 109.49842 * 61.42441 * 11 10 9 29 29 H 1.08989 * 109.52254 * 301.33606 * 11 10 9 30 30 H 1.08997 * 109.57954 * 185.57422 * 12 11 10 31 31 H 1.08999 * 109.69838 * 65.22315 * 12 11 10 32 32 H 1.08007 * 120.06312 * 0.04641 * 17 16 14 33 33 H 1.08002 * 119.89969 * 180.27045 * 19 18 17 34 34 H 1.08003 * 119.93652 * 179.75317 * 20 19 18 35 35 H 1.09000 * 109.58901 * 65.93342 * 22 13 12 36 36 H 1.09004 * 109.58739 * 186.35365 * 22 13 12 37 37 H 1.09008 * 109.49605 * 298.57114 * 23 10 9 38 38 H 1.08998 * 109.49755 * 58.66612 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0023 11 6 5.5470 -2.6379 -0.1229 12 6 6.0511 -4.0842 -0.1558 13 7 5.5421 -4.7895 1.0283 14 6 6.3847 -5.4392 1.8556 15 8 7.5859 -5.3315 1.7064 16 6 5.8466 -6.2844 2.9468 17 6 6.7028 -6.8002 3.9189 18 7 6.2184 -7.5537 4.8895 19 6 4.9240 -7.8138 4.9424 20 6 4.0702 -7.3065 3.9738 21 7 4.5453 -6.5538 3.0018 22 6 4.0964 -4.7783 1.2901 23 6 3.6147 -3.3197 1.3098 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6798 0.8911 26 1 3.8752 -0.6802 -0.8888 27 1 3.5877 -3.1757 -0.8396 28 1 5.9826 -2.1202 0.7317 29 1 5.8374 -2.1303 -1.0426 30 1 7.1410 -4.0914 -0.1451 31 1 5.6912 -4.5783 -1.0582 32 1 7.7602 -6.5839 3.8784 33 1 4.5301 -8.4267 5.7398 34 1 3.0134 -7.5251 4.0189 35 1 3.5783 -5.3264 0.5032 36 1 3.8962 -5.2438 2.2551 37 1 4.0687 -2.7955 2.1509 38 1 2.5295 -3.2974 1.4096 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399280946.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:14 Heat of formation + Delta-G solvation = 22.095300 kcal Electronic energy + Delta-G solvation = -21062.111351 eV Core-core repulsion = 17905.055364 eV Total energy + Delta-G solvation = -3157.055988 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.63971 -39.68383 -37.44440 -35.02920 -33.89631 -32.30411 -31.89373 -30.61555 -28.62145 -26.04462 -24.97647 -24.19677 -22.87842 -21.72944 -20.28891 -19.15943 -18.11751 -17.34453 -17.01131 -16.72352 -15.95472 -15.72309 -15.14557 -14.54702 -14.31663 -14.03528 -13.73512 -13.49633 -13.27633 -13.05494 -12.86742 -12.44295 -12.27047 -11.72443 -11.47816 -11.43405 -11.05815 -10.74262 -10.64889 -10.40745 -10.29417 -9.90575 -9.78822 -9.71291 -9.51841 -9.09978 -8.88387 -8.53654 -8.42508 -6.04897 -4.02058 0.09244 0.66967 2.56452 2.87955 3.29945 3.37860 3.41830 3.46998 3.68386 3.84303 4.08889 4.42684 4.45019 4.77440 4.81745 5.15493 5.24800 5.28941 5.36557 5.43516 5.58191 5.66338 5.81058 5.92030 5.98412 6.28129 6.29102 6.32119 6.48178 6.66435 6.74428 6.83354 6.88298 7.00472 7.24758 7.26432 7.43561 7.48561 7.79754 8.03529 8.53523 8.99909 9.58514 11.08356 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025708 B = 0.004284 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.895007 B = 6534.566022 C = 7190.098368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.066 3.934 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.515 4.515 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.074 4.074 11 C -0.131 4.131 12 C 0.110 3.890 13 N -0.579 5.579 14 C 0.569 3.431 15 O -0.541 6.541 16 C 0.036 3.964 17 C 0.107 3.893 18 N -0.440 5.440 19 C 0.069 3.931 20 C 0.045 3.955 21 N -0.398 5.398 22 C 0.071 3.929 23 C -0.120 4.120 24 H 0.262 0.738 25 H 0.014 0.986 26 H 0.011 0.989 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.182 0.818 33 H 0.176 0.824 34 H 0.180 0.820 35 H 0.065 0.935 36 H 0.136 0.864 37 H 0.053 0.947 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.740 -15.054 7.280 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.553 4.553 8 H 0.092 0.908 9 C -0.047 4.047 10 C -0.093 4.093 11 C -0.169 4.169 12 C -0.012 4.012 13 N -0.310 5.310 14 C 0.354 3.646 15 O -0.419 6.419 16 C -0.104 4.104 17 C -0.052 4.052 18 N -0.154 5.154 19 C -0.092 4.092 20 C -0.116 4.116 21 N -0.116 5.116 22 C -0.051 4.051 23 C -0.158 4.158 24 H 0.072 0.928 25 H 0.032 0.968 26 H 0.029 0.971 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.199 0.801 33 H 0.193 0.807 34 H 0.197 0.803 35 H 0.084 0.916 36 H 0.152 0.848 37 H 0.072 0.928 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.254 -14.855 7.167 19.421 hybrid contribution 0.060 1.052 -0.078 1.057 sum 10.314 -13.803 7.089 18.632 Atomic orbital electron populations 1.69910 1.06261 1.26802 1.51419 1.25018 0.94682 0.99080 0.94696 0.86821 0.80389 0.83845 0.78470 1.20366 1.21495 1.19101 1.21137 0.89420 0.94326 1.50397 0.90828 1.19621 0.97191 0.91714 0.96159 1.21036 0.92072 0.99032 0.97130 1.22053 0.98076 0.94566 1.02234 1.21764 1.00087 0.93016 0.86364 1.48078 1.08766 1.49327 1.24799 1.17659 0.85860 0.79875 0.81160 1.90770 1.14266 1.64563 1.72270 1.22315 0.90844 0.99530 0.97707 1.23810 1.02142 0.90805 0.88450 1.68627 1.14479 1.10856 1.21464 1.24104 0.89879 0.96735 0.98433 1.24123 1.02711 0.93516 0.91256 1.68577 1.12501 1.08872 1.21670 1.23207 0.77659 0.98728 1.05501 1.22012 1.02593 0.93118 0.98062 0.92818 0.96753 0.97079 0.91745 0.92041 0.91019 0.89478 0.91274 0.80070 0.80699 0.80287 0.91621 0.84767 0.92798 0.89288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.51 -14.13 8.94 -34.44 -0.31 -14.44 16 8 H 0.07 2.14 7.30 -52.49 -0.38 1.76 16 9 C -0.01 -0.22 3.52 -27.89 -0.10 -0.32 16 10 C -0.07 -1.40 2.10 -90.58 -0.19 -1.59 16 11 C -0.13 -2.10 5.36 -26.60 -0.14 -2.25 16 12 C 0.11 1.59 6.44 -3.71 -0.02 1.56 16 13 N -0.58 -8.67 2.97 -173.50 -0.51 -9.18 16 14 C 0.57 8.54 7.66 -12.19 -0.09 8.44 16 15 O -0.54 -9.11 15.81 5.35 0.08 -9.02 16 16 C 0.04 0.46 6.58 -82.85 -0.55 -0.09 16 17 C 0.11 1.21 10.77 -17.00 -0.18 1.02 16 18 N -0.44 -4.52 10.49 -12.71 -0.13 -4.65 16 19 C 0.07 0.52 11.23 -17.24 -0.19 0.33 16 20 C 0.05 0.36 11.22 -17.39 -0.20 0.16 16 21 N -0.40 -4.53 6.30 -9.62 -0.06 -4.59 16 22 C 0.07 1.04 5.94 -3.49 -0.02 1.02 16 23 C -0.12 -2.11 5.21 -26.39 -0.14 -2.25 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 26 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.07 8.14 -51.94 -0.42 0.65 16 30 H 0.09 1.25 7.00 -51.93 -0.36 0.89 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.18 1.86 7.68 -52.48 -0.40 1.46 16 33 H 0.18 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.18 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.14 1.85 3.99 -84.35 -0.34 1.51 16 37 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 38 H 0.09 1.73 6.91 -51.93 -0.36 1.37 16 LS Contribution 309.10 15.07 4.66 4.66 Total: -1.00 -32.67 309.10 -7.25 -39.92 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -5.16 Total: -0.82 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -2.23 Total: -6.59 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.07 Total: -45.11 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.08 Total: -9.02 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.67 -7.25 -39.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399280946.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.018 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds