Wall clock time and date at job start Mon Mar 30 2020 02:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99539 * 2 1 4 4 H 1.48508 * 109.46876 * 269.99699 * 3 2 1 5 5 H 1.48496 * 109.47444 * 29.99642 * 3 2 1 6 6 H 1.48496 * 109.46850 * 150.00087 * 3 2 1 7 7 C 1.37870 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00358 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00049 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47318 * 179.97438 * 9 7 2 11 11 C 1.53047 * 109.45891 * 175.00105 * 10 9 7 12 12 C 1.53201 * 109.30830 * 181.36917 * 11 10 9 13 13 N 1.46924 * 108.77972 * 305.36354 * 12 11 10 14 14 C 1.34771 * 120.63227 * 233.58817 * 13 12 11 15 15 O 1.21515 * 119.99834 * 7.62082 * 14 13 12 16 16 C 1.48145 * 120.00148 * 187.61596 * 14 13 12 17 17 C 1.39438 * 120.10124 * 189.28106 * 16 14 13 18 18 N 1.32076 * 119.87892 * 180.02562 * 17 16 14 19 19 C 1.32141 * 120.06691 * 359.73356 * 18 17 16 20 20 C 1.38727 * 120.19637 * 0.52308 * 19 18 17 21 21 N 1.31796 * 120.12375 * 359.47894 * 20 19 18 22 22 C 1.46924 * 118.73513 * 53.85796 * 13 12 11 23 23 C 1.53045 * 109.44882 * 295.06042 * 10 9 7 24 24 H 0.96998 * 120.00244 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47116 * 59.99523 * 9 7 2 26 26 H 1.09003 * 109.46941 * 300.00291 * 9 7 2 27 27 H 1.08996 * 109.46512 * 55.02563 * 10 9 7 28 28 H 1.08997 * 109.49842 * 61.42441 * 11 10 9 29 29 H 1.08989 * 109.52254 * 301.33606 * 11 10 9 30 30 H 1.08997 * 109.57954 * 185.57422 * 12 11 10 31 31 H 1.08999 * 109.69838 * 65.22315 * 12 11 10 32 32 H 1.08007 * 120.06312 * 0.04641 * 17 16 14 33 33 H 1.08002 * 119.89969 * 180.27045 * 19 18 17 34 34 H 1.08003 * 119.93652 * 179.75317 * 20 19 18 35 35 H 1.09000 * 109.58901 * 65.93342 * 22 13 12 36 36 H 1.09004 * 109.58739 * 186.35365 * 22 13 12 37 37 H 1.09008 * 109.49605 * 298.57114 * 23 10 9 38 38 H 1.08998 * 109.49755 * 58.66612 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6364 0.0023 11 6 5.5470 -2.6379 -0.1229 12 6 6.0511 -4.0842 -0.1558 13 7 5.5421 -4.7895 1.0283 14 6 6.3847 -5.4392 1.8556 15 8 7.5859 -5.3315 1.7064 16 6 5.8466 -6.2844 2.9468 17 6 6.7028 -6.8002 3.9189 18 7 6.2184 -7.5537 4.8895 19 6 4.9240 -7.8138 4.9424 20 6 4.0702 -7.3065 3.9738 21 7 4.5453 -6.5538 3.0018 22 6 4.0964 -4.7783 1.2901 23 6 3.6147 -3.3197 1.3098 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6798 0.8911 26 1 3.8752 -0.6802 -0.8888 27 1 3.5877 -3.1757 -0.8396 28 1 5.9826 -2.1202 0.7317 29 1 5.8374 -2.1303 -1.0426 30 1 7.1410 -4.0914 -0.1451 31 1 5.6912 -4.5783 -1.0582 32 1 7.7602 -6.5839 3.8784 33 1 4.5301 -8.4267 5.7398 34 1 3.0134 -7.5251 4.0189 35 1 3.5783 -5.3264 0.5032 36 1 3.8962 -5.2438 2.2551 37 1 4.0687 -2.7955 2.1509 38 1 2.5295 -3.2974 1.4096 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399280946.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:14 Heat of formation + Delta-G solvation = 0.483060 kcal Electronic energy + Delta-G solvation = -21063.048529 eV Core-core repulsion = 17905.055364 eV Total energy + Delta-G solvation = -3157.993165 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.47254 -40.78976 -38.77531 -36.06286 -35.32598 -34.03062 -32.89046 -31.82809 -30.33668 -27.17847 -25.85417 -25.48500 -24.14612 -23.22159 -21.65517 -20.50165 -19.07779 -18.78179 -18.20794 -17.85763 -17.06996 -16.74883 -16.37832 -15.93573 -15.48624 -15.28877 -15.07820 -14.93966 -14.64079 -14.24076 -14.17283 -13.83193 -13.70370 -13.13522 -13.03158 -12.51836 -12.42980 -12.38469 -12.05095 -11.98171 -11.66711 -11.50077 -11.32843 -11.08593 -10.93824 -10.71793 -10.54308 -9.86120 -9.65314 -8.25541 -6.26936 -0.69446 -0.06167 1.34952 1.37073 1.48050 1.56505 1.82137 2.37438 2.66014 2.82740 3.10008 3.15723 3.36747 3.53957 3.95048 4.01936 4.03529 4.13101 4.21550 4.29696 4.42135 4.52179 4.64099 4.65559 4.86426 4.92315 4.99829 5.09086 5.15876 5.21371 5.32587 5.35597 5.45010 5.62917 5.72639 5.74653 6.02290 6.26398 6.34797 6.57380 6.80195 6.91541 7.36872 8.90720 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025708 B = 0.004284 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.895007 B = 6534.566022 C = 7190.098368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.253 1.253 7 C -0.516 4.516 8 H 0.042 0.958 9 C -0.007 4.007 10 C -0.072 4.072 11 C -0.122 4.122 12 C 0.112 3.888 13 N -0.585 5.585 14 C 0.568 3.432 15 O -0.566 6.566 16 C 0.011 3.989 17 C 0.104 3.896 18 N -0.457 5.457 19 C 0.088 3.912 20 C 0.053 3.947 21 N -0.420 5.420 22 C 0.083 3.917 23 C -0.114 4.114 24 H 0.264 0.736 25 H 0.010 0.990 26 H 0.015 0.985 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.181 0.819 33 H 0.221 0.779 34 H 0.219 0.781 35 H 0.070 0.930 36 H 0.151 0.849 37 H 0.045 0.955 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.540 -16.048 8.248 20.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.191 4.191 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.177 1.177 7 C -0.554 4.554 8 H 0.060 0.940 9 C -0.045 4.045 10 C -0.090 4.090 11 C -0.160 4.160 12 C -0.010 4.010 13 N -0.315 5.315 14 C 0.355 3.645 15 O -0.446 6.446 16 C -0.127 4.127 17 C -0.054 4.054 18 N -0.171 5.171 19 C -0.074 4.074 20 C -0.110 4.110 21 N -0.138 5.138 22 C -0.039 4.039 23 C -0.152 4.152 24 H 0.073 0.927 25 H 0.028 0.972 26 H 0.034 0.966 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.198 0.802 33 H 0.237 0.763 34 H 0.235 0.765 35 H 0.088 0.912 36 H 0.167 0.833 37 H 0.064 0.936 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.097 -15.846 8.116 20.979 hybrid contribution -0.312 1.204 -0.280 1.275 sum 10.785 -14.642 7.836 19.801 Atomic orbital electron populations 1.70054 1.08053 1.27826 1.53293 1.25900 0.95476 1.03032 0.94662 0.85787 0.79424 0.79172 0.79019 1.19329 1.21263 1.17683 1.21447 0.91710 0.93104 1.49101 0.93984 1.19585 0.94288 0.94666 0.95925 1.20958 0.94173 0.96319 0.97579 1.21940 0.95470 0.95948 1.02645 1.21756 1.00256 0.92012 0.86989 1.48132 1.08726 1.49617 1.25046 1.18016 0.85528 0.79666 0.81336 1.90740 1.15264 1.65541 1.73068 1.21928 0.91785 1.01021 0.97987 1.23783 1.02121 0.90965 0.88537 1.68704 1.16105 1.11123 1.21209 1.24884 0.88689 0.95171 0.98614 1.24809 1.04502 0.91804 0.89844 1.68325 1.11958 1.10237 1.23272 1.23132 0.77628 0.96366 1.06736 1.21892 1.00953 0.95268 0.97109 0.92729 0.97150 0.96618 0.92210 0.92756 0.89627 0.89182 0.89831 0.80196 0.76298 0.76496 0.91192 0.83350 0.93646 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.01 13.96 21.45 0.30 -58.71 16 2 C 0.01 0.33 5.47 84.65 0.46 0.79 16 3 Si 0.94 44.48 27.47 68.60 1.88 46.36 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 7 C -0.52 -28.86 8.94 25.60 0.23 -28.63 16 8 H 0.04 2.55 7.30 -2.91 -0.02 2.53 16 9 C -0.01 -0.33 3.52 29.85 0.10 -0.23 16 10 C -0.07 -2.69 2.10 -10.76 -0.02 -2.71 16 11 C -0.12 -3.77 5.36 30.68 0.16 -3.61 16 12 C 0.11 3.11 6.44 86.37 0.56 3.67 16 13 N -0.59 -17.10 2.97 -821.14 -2.44 -19.54 16 14 C 0.57 16.82 7.66 86.88 0.67 17.48 16 15 O -0.57 -19.07 15.81 -3.76 -0.06 -19.13 16 16 C 0.01 0.26 6.58 41.89 0.28 0.54 16 17 C 0.10 2.25 10.77 84.95 0.91 3.16 16 18 N -0.46 -8.35 10.49 -194.12 -2.04 -10.39 16 19 C 0.09 0.99 11.23 84.76 0.95 1.94 16 20 C 0.05 0.66 11.22 84.82 0.95 1.61 16 21 N -0.42 -8.77 6.30 -184.34 -1.16 -9.93 16 22 C 0.08 2.40 5.94 86.51 0.51 2.91 16 23 C -0.11 -4.06 5.21 30.82 0.16 -3.90 16 24 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 25 H 0.01 0.48 7.20 -2.39 -0.02 0.46 16 26 H 0.02 0.70 7.57 -2.39 -0.02 0.69 16 27 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.09 2.50 7.00 -2.39 -0.02 2.48 16 31 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.18 3.73 7.68 -2.91 -0.02 3.71 16 33 H 0.22 0.41 8.06 -2.91 -0.02 0.39 16 34 H 0.22 0.92 8.06 -2.91 -0.02 0.89 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.15 3.94 3.99 -66.41 -0.27 3.68 16 37 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.06 2.59 6.91 -2.39 -0.02 2.57 16 Total: -1.00 -72.24 309.10 3.17 -69.07 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 0.75 Total: 9.25 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 5.93 Total: -6.98 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -5.33 Total: -98.57 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.06 Total: -19.13 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.36 kcal Total: -72.24 3.17 -69.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399280946.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.551 kcal (2) G-P(sol) polarization free energy of solvation -72.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds