Wall clock time and date at job start Mon Mar 30 2020 01:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00347 * 2 1 4 4 C 1.50693 * 109.47101 * 180.02562 * 3 2 1 5 5 C 1.38167 * 120.03230 * 0.02562 * 4 3 2 6 6 C 1.38237 * 120.05858 * 179.97438 * 5 4 3 7 7 C 1.38289 * 120.11494 * 359.74537 * 6 5 4 8 8 C 1.38125 * 120.05202 * 0.50894 * 7 6 5 9 9 C 1.38709 * 120.03025 * 179.97438 * 4 3 2 10 10 O 1.35906 * 120.05198 * 0.02562 * 9 4 3 11 11 C 1.42901 * 117.00155 * 180.02562 * 10 9 4 12 12 C 1.52991 * 109.47372 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.47547 * 305.00347 * 12 11 10 14 14 C 1.47204 * 109.47255 * 65.00441 * 12 11 10 15 15 N 6.60417 * 98.57539 * 19.95349 * 2 1 3 16 16 C 1.53005 * 109.47557 * 184.99959 * 12 11 10 17 17 C 1.50699 * 109.47324 * 174.99941 * 16 12 11 18 18 H 1.07999 * 119.99892 * 0.02562 * 17 16 12 19 19 C 1.37879 * 119.99560 * 180.02562 * 17 16 12 20 20 N 1.31511 * 120.00066 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99486 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47284 * 89.99975 * 21 19 17 23 23 H 1.48505 * 109.46783 * 209.99584 * 21 19 17 24 24 H 1.48505 * 109.47404 * 329.99524 * 21 19 17 25 25 H 1.09000 * 109.46616 * 300.00160 * 1 2 3 26 26 H 1.08996 * 109.47263 * 59.99679 * 1 2 3 27 27 H 1.08997 * 109.47147 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47121 * 59.99851 * 3 2 1 29 29 H 1.09001 * 109.46758 * 300.00548 * 3 2 1 30 30 H 1.08006 * 119.96869 * 359.97438 * 5 4 3 31 31 H 1.08001 * 119.94627 * 179.97438 * 6 5 4 32 32 H 1.07995 * 119.98087 * 180.27524 * 7 6 5 33 33 H 1.08002 * 120.03152 * 179.77429 * 8 7 6 34 34 H 1.09003 * 109.47208 * 300.00726 * 11 10 9 35 35 H 1.09006 * 109.47043 * 60.00389 * 11 10 9 36 36 H 1.09001 * 109.46763 * 295.00720 * 16 12 11 37 37 H 1.09002 * 109.46508 * 54.99774 * 16 12 11 38 38 H 0.97003 * 119.99607 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.1074 -0.0608 -0.0016 6 6 5.4854 -0.1706 -0.0028 7 6 6.2721 0.9667 -0.0082 8 6 5.6824 2.2157 -0.0019 9 6 4.2995 2.3286 -0.0013 10 8 3.7168 3.5564 -0.0008 11 6 4.5890 4.6884 -0.0021 12 6 3.7577 5.9728 -0.0007 13 1 3.0640 5.9576 -0.8414 14 6 3.0007 6.0660 1.2583 15 7 2.4138 6.1383 2.2285 16 6 4.6867 7.1819 -0.1278 17 6 3.8628 8.4378 -0.2499 18 1 2.7845 8.3795 -0.2377 19 6 4.4858 9.6612 -0.3773 20 7 5.7989 9.7321 -0.3917 21 14 3.4646 11.2180 -0.5280 22 1 3.2027 11.7711 0.8250 23 1 4.2049 12.2192 -1.3373 24 1 2.1743 10.9014 -1.1917 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.6887 1.8463 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.4951 -0.9505 -0.0016 31 1 5.9484 -1.1463 -0.0031 32 1 7.3484 0.8783 -0.0135 33 1 6.2972 3.1037 -0.0025 34 1 5.2190 4.6628 0.8871 35 1 5.2167 4.6625 -0.8929 36 1 5.3205 7.2475 0.7565 37 1 5.3107 7.0689 -1.0144 38 1 6.2372 10.5929 -0.4810 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414150967.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:43 Heat of formation + Delta-G solvation = -45.502438 kcal Electronic energy + Delta-G solvation = -20203.394965 eV Core-core repulsion = 17011.114968 eV Total energy + Delta-G solvation = -3192.279997 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.28423 -38.20364 -37.34728 -36.13201 -33.87226 -32.31075 -31.77807 -29.93082 -27.56445 -27.02538 -25.49460 -24.19641 -22.05730 -21.81856 -21.24655 -18.07118 -17.23591 -16.72101 -16.55440 -16.03755 -16.01039 -15.36927 -14.97882 -14.71360 -14.58873 -14.27726 -13.73384 -13.20452 -13.08091 -12.75042 -12.63869 -12.38312 -12.15187 -11.99948 -11.81639 -11.45646 -11.19694 -11.18471 -11.03554 -10.79281 -10.67704 -10.64372 -10.32826 -9.96510 -9.76150 -9.37565 -8.82198 -8.53868 -8.09874 -6.18255 -4.22151 1.30054 1.45220 3.21099 3.25517 3.32382 3.36371 3.55766 3.57276 3.60867 3.74463 4.34799 4.63148 4.73939 4.94804 4.99622 5.12310 5.17318 5.20166 5.20939 5.34687 5.38803 5.41288 5.43951 5.47704 5.50449 5.69312 5.76483 5.98847 6.13876 6.28260 6.32032 6.36877 6.50963 6.80748 7.03878 7.27250 7.36605 7.45493 7.76438 8.11006 8.35110 8.81775 9.44019 10.92656 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.022342 B = 0.003783 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.947783 B = 7399.677820 C = 8310.441896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.113 3.887 4 C -0.127 4.127 5 C -0.062 4.062 6 C -0.166 4.166 7 C -0.080 4.080 8 C -0.208 4.208 9 C 0.143 3.857 10 O -0.315 6.315 11 C 0.065 3.935 12 C 0.012 3.988 13 H 0.113 0.887 14 C 0.243 3.757 15 N -0.467 5.467 16 C 0.034 3.966 17 C -0.529 4.529 18 H 0.059 0.941 19 C 0.064 3.936 20 N -0.890 5.890 21 Si 0.894 3.106 22 H -0.280 1.280 23 H -0.284 1.284 24 H -0.272 1.272 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.135 0.865 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.134 0.866 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.029 0.971 37 H 0.043 0.957 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.917 -19.182 -2.438 19.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.311 6.311 3 C 0.037 3.963 4 C -0.127 4.127 5 C -0.080 4.080 6 C -0.184 4.184 7 C -0.098 4.098 8 C -0.227 4.227 9 C 0.097 3.903 10 O -0.229 6.229 11 C -0.010 4.010 12 C -0.010 4.010 13 H 0.131 0.869 14 C -0.074 4.074 15 N -0.144 5.144 16 C -0.004 4.004 17 C -0.567 4.567 18 H 0.077 0.923 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.721 3.279 22 H -0.206 1.206 23 H -0.210 1.210 24 H -0.197 1.197 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.153 0.847 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.152 0.848 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.758 -19.039 -0.989 19.263 hybrid contribution -0.157 1.305 -0.428 1.382 sum -2.915 -17.734 -1.417 18.028 Atomic orbital electron populations 1.22727 0.80787 1.02603 1.00285 1.87780 1.19784 1.27924 1.95577 1.21015 0.89702 0.84247 1.01297 1.18967 0.94021 0.91458 1.08288 1.20794 0.94414 0.96528 0.96255 1.21035 0.93709 0.98488 1.05187 1.20966 0.99797 0.91869 0.97196 1.21292 0.93288 0.99329 1.08743 1.18721 0.91263 0.84651 0.95664 1.86094 1.36744 1.12070 1.87969 1.23090 0.92686 0.82462 1.02800 1.19306 0.97333 0.95153 0.89178 0.86894 1.28936 0.92849 0.91256 0.94322 1.81024 1.10660 1.10423 1.12294 1.19177 0.93634 0.88541 0.99069 1.21072 0.93086 0.91053 1.51505 0.92295 1.24942 0.94940 0.99230 0.94741 1.69929 1.07849 1.25564 1.49508 0.86550 0.80302 0.82759 0.78243 1.20580 1.21009 1.19662 0.93960 0.93906 0.89653 0.91880 0.91722 0.84727 0.86094 0.85865 0.84801 0.91319 0.89815 0.95249 0.93931 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.65 9.18 -35.23 -0.32 -4.98 16 3 C 0.11 1.44 5.80 36.00 0.21 1.65 16 4 C -0.13 -1.71 5.89 -104.48 -0.62 -2.32 16 5 C -0.06 -0.74 9.37 -39.61 -0.37 -1.12 16 6 C -0.17 -1.79 10.04 -39.56 -0.40 -2.19 16 7 C -0.08 -0.88 10.04 -39.60 -0.40 -1.28 16 8 C -0.21 -2.60 9.04 -39.43 -0.36 -2.96 16 9 C 0.14 2.02 6.66 -39.22 -0.26 1.76 16 10 O -0.32 -4.78 9.30 -19.44 -0.18 -4.97 16 11 C 0.07 0.97 4.09 37.15 0.15 1.12 16 12 C 0.01 0.21 2.45 -93.41 -0.23 -0.01 16 13 H 0.11 1.90 8.14 -51.93 -0.42 1.47 16 14 C 0.24 5.00 13.71 -20.75 -0.28 4.72 16 15 N -0.47 -10.42 18.54 42.16 0.78 -9.64 16 16 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 17 C -0.53 -13.69 8.60 -34.44 -0.30 -13.99 16 18 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -24.82 13.29 55.43 0.74 -24.08 16 21 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.13 1.49 7.01 -52.48 -0.37 1.12 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 32 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.13 1.52 6.30 -52.49 -0.33 1.19 16 34 H 0.07 0.99 7.66 -51.93 -0.40 0.59 16 35 H 0.08 1.07 7.66 -51.93 -0.40 0.67 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 333.54 15.07 5.03 5.03 Total: -1.00 -30.10 333.54 -6.19 -36.29 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -5.26 Total: -2.52 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: -1.96 Total: -10.97 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 1.52 Total: -33.73 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -0.50 Total: -9.94 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.10 -6.19 -36.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414150967.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.213 kcal (2) G-P(sol) polarization free energy of solvation -30.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds