Wall clock time and date at job start Mon Mar 30 2020 01:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00347 * 2 1 4 4 C 1.50693 * 109.47101 * 180.02562 * 3 2 1 5 5 C 1.38167 * 120.03230 * 0.02562 * 4 3 2 6 6 C 1.38237 * 120.05858 * 179.97438 * 5 4 3 7 7 C 1.38289 * 120.11494 * 359.74537 * 6 5 4 8 8 C 1.38125 * 120.05202 * 0.50894 * 7 6 5 9 9 C 1.38709 * 120.03025 * 179.97438 * 4 3 2 10 10 O 1.35906 * 120.05198 * 0.02562 * 9 4 3 11 11 C 1.42901 * 117.00155 * 180.02562 * 10 9 4 12 12 C 1.52991 * 109.47372 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.47547 * 305.00347 * 12 11 10 14 14 C 1.47204 * 109.47255 * 65.00441 * 12 11 10 15 15 N 6.60417 * 98.57539 * 19.95349 * 2 1 3 16 16 C 1.53005 * 109.47557 * 184.99959 * 12 11 10 17 17 C 1.50699 * 109.47324 * 174.99941 * 16 12 11 18 18 H 1.07999 * 119.99892 * 0.02562 * 17 16 12 19 19 C 1.37879 * 119.99560 * 180.02562 * 17 16 12 20 20 N 1.31511 * 120.00066 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99486 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47284 * 89.99975 * 21 19 17 23 23 H 1.48505 * 109.46783 * 209.99584 * 21 19 17 24 24 H 1.48505 * 109.47404 * 329.99524 * 21 19 17 25 25 H 1.09000 * 109.46616 * 300.00160 * 1 2 3 26 26 H 1.08996 * 109.47263 * 59.99679 * 1 2 3 27 27 H 1.08997 * 109.47147 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47121 * 59.99851 * 3 2 1 29 29 H 1.09001 * 109.46758 * 300.00548 * 3 2 1 30 30 H 1.08006 * 119.96869 * 359.97438 * 5 4 3 31 31 H 1.08001 * 119.94627 * 179.97438 * 6 5 4 32 32 H 1.07995 * 119.98087 * 180.27524 * 7 6 5 33 33 H 1.08002 * 120.03152 * 179.77429 * 8 7 6 34 34 H 1.09003 * 109.47208 * 300.00726 * 11 10 9 35 35 H 1.09006 * 109.47043 * 60.00389 * 11 10 9 36 36 H 1.09001 * 109.46763 * 295.00720 * 16 12 11 37 37 H 1.09002 * 109.46508 * 54.99774 * 16 12 11 38 38 H 0.97003 * 119.99607 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.1074 -0.0608 -0.0016 6 6 5.4854 -0.1706 -0.0028 7 6 6.2721 0.9667 -0.0082 8 6 5.6824 2.2157 -0.0019 9 6 4.2995 2.3286 -0.0013 10 8 3.7168 3.5564 -0.0008 11 6 4.5890 4.6884 -0.0021 12 6 3.7577 5.9728 -0.0007 13 1 3.0640 5.9576 -0.8414 14 6 3.0007 6.0660 1.2583 15 7 2.4138 6.1383 2.2285 16 6 4.6867 7.1819 -0.1278 17 6 3.8628 8.4378 -0.2499 18 1 2.7845 8.3795 -0.2377 19 6 4.4858 9.6612 -0.3773 20 7 5.7989 9.7321 -0.3917 21 14 3.4646 11.2180 -0.5280 22 1 3.2027 11.7711 0.8250 23 1 4.2049 12.2192 -1.3373 24 1 2.1743 10.9014 -1.1917 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.6887 1.8463 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.4951 -0.9505 -0.0016 31 1 5.9484 -1.1463 -0.0031 32 1 7.3484 0.8783 -0.0135 33 1 6.2972 3.1037 -0.0025 34 1 5.2190 4.6628 0.8871 35 1 5.2167 4.6625 -0.8929 36 1 5.3205 7.2475 0.7565 37 1 5.3107 7.0689 -1.0144 38 1 6.2372 10.5929 -0.4810 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414150967.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:43 Heat of formation + Delta-G solvation = -61.894996 kcal Electronic energy + Delta-G solvation = -20204.105799 eV Core-core repulsion = 17011.114968 eV Total energy + Delta-G solvation = -3192.990832 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.29161 -39.25012 -38.38569 -37.57894 -35.65831 -33.88968 -32.89158 -30.92386 -29.00948 -28.03863 -26.37714 -25.66848 -23.75629 -22.82510 -22.25609 -19.14233 -18.71729 -18.40966 -17.54305 -17.10840 -16.93963 -16.56596 -16.43719 -16.06488 -15.46418 -15.29502 -15.07378 -14.75147 -14.36746 -14.04934 -13.87639 -13.75554 -13.53838 -13.24144 -13.07595 -12.90434 -12.62029 -12.54516 -12.44623 -12.19089 -12.03975 -11.80836 -11.68478 -11.54663 -11.26307 -10.82670 -10.57212 -9.73852 -9.06982 -8.21922 -6.29953 0.38929 0.52050 1.40219 1.42870 1.51509 1.83316 1.93439 2.19718 2.42844 2.72441 2.83334 3.09500 3.16480 3.81362 3.93923 4.07663 4.16777 4.24167 4.25301 4.38963 4.40371 4.51008 4.54143 4.57563 4.63465 4.64455 4.75633 4.83705 4.90293 5.10916 5.40266 5.41938 5.48479 5.54819 5.63041 5.75280 5.90949 6.14493 6.17581 6.43178 6.69523 6.83410 7.38811 8.89020 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.022342 B = 0.003783 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.947783 B = 7399.677820 C = 8310.441896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.402 6.402 3 C 0.118 3.882 4 C -0.145 4.145 5 C -0.069 4.069 6 C -0.161 4.161 7 C -0.081 4.081 8 C -0.216 4.216 9 C 0.119 3.881 10 O -0.328 6.328 11 C 0.074 3.926 12 C 0.022 3.978 13 H 0.129 0.871 14 C 0.253 3.747 15 N -0.502 5.502 16 C 0.041 3.959 17 C -0.542 4.542 18 H 0.055 0.945 19 C 0.015 3.985 20 N -0.921 5.921 21 Si 0.947 3.053 22 H -0.284 1.284 23 H -0.278 1.278 24 H -0.265 1.265 25 H 0.042 0.958 26 H 0.049 0.951 27 H 0.106 0.894 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.142 0.858 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.143 0.857 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.009 0.991 37 H 0.045 0.955 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.615 -20.483 -3.148 20.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C 0.041 3.959 4 C -0.146 4.146 5 C -0.087 4.087 6 C -0.179 4.179 7 C -0.099 4.099 8 C -0.234 4.234 9 C 0.074 3.926 10 O -0.243 6.243 11 C -0.002 4.002 12 C 0.000 4.000 13 H 0.147 0.853 14 C -0.063 4.063 15 N -0.179 5.179 16 C 0.002 3.998 17 C -0.580 4.580 18 H 0.073 0.927 19 C -0.184 4.184 20 N -0.560 5.560 21 Si 0.773 3.227 22 H -0.211 1.211 23 H -0.203 1.203 24 H -0.189 1.189 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.125 0.875 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.159 0.841 31 H 0.167 0.833 32 H 0.169 0.831 33 H 0.161 0.839 34 H 0.090 0.910 35 H 0.125 0.875 36 H 0.027 0.973 37 H 0.064 0.936 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.468 -20.354 -1.704 20.574 hybrid contribution -0.255 1.605 -0.200 1.637 sum -2.723 -18.749 -1.904 19.041 Atomic orbital electron populations 1.22942 0.79306 1.04152 1.00661 1.87756 1.21435 1.27355 1.95609 1.20899 0.89806 0.84604 1.00565 1.19192 0.94383 0.92014 1.08980 1.20983 0.95309 0.96159 0.96224 1.21405 0.93190 0.99862 1.03409 1.21335 1.01333 0.91206 0.96001 1.21522 0.92744 1.00578 1.08587 1.18929 0.92170 0.84119 0.97410 1.86030 1.37074 1.12548 1.88627 1.22921 0.91911 0.81187 1.04139 1.19217 0.96897 0.95413 0.88456 0.85337 1.29453 0.92232 0.90205 0.94437 1.81017 1.11898 1.11581 1.13442 1.18978 0.93611 0.89069 0.98105 1.21487 0.93347 0.92619 1.50507 0.92672 1.25660 0.95872 1.02049 0.94862 1.70011 1.09032 1.26206 1.50767 0.85706 0.79313 0.79727 0.77922 1.21050 1.20312 1.18894 0.93889 0.93239 0.87550 0.93199 0.91873 0.84052 0.83273 0.83094 0.83897 0.91047 0.87476 0.97263 0.93633 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.40 -9.30 9.18 -148.98 -1.37 -10.67 16 3 C 0.12 2.99 5.80 71.23 0.41 3.41 16 4 C -0.14 -3.82 5.89 -19.77 -0.12 -3.94 16 5 C -0.07 -1.55 9.37 22.25 0.21 -1.34 16 6 C -0.16 -3.02 10.04 22.28 0.22 -2.80 16 7 C -0.08 -1.55 10.04 22.25 0.22 -1.33 16 8 C -0.22 -5.02 9.04 22.37 0.20 -4.82 16 9 C 0.12 3.26 6.66 22.51 0.15 3.41 16 10 O -0.33 -9.77 9.30 -92.49 -0.86 -10.63 16 11 C 0.07 2.10 4.09 71.98 0.29 2.40 16 12 C 0.02 0.76 2.45 -12.60 -0.03 0.73 16 13 H 0.13 4.16 8.14 -2.39 -0.02 4.14 16 14 C 0.25 10.37 13.71 89.44 1.23 11.60 16 15 N -0.50 -22.52 18.54 20.01 0.37 -22.14 16 16 C 0.04 1.79 4.42 29.85 0.13 1.92 16 17 C -0.54 -27.88 8.60 25.60 0.22 -27.66 16 18 H 0.06 2.82 7.59 -2.91 -0.02 2.80 16 19 C 0.02 0.80 5.46 84.66 0.46 1.26 16 20 N -0.92 -51.36 13.29 21.45 0.28 -51.07 16 21 Si 0.95 42.55 29.54 68.60 2.03 44.58 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 25 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.14 2.91 7.01 -2.91 -0.02 2.89 16 31 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 33 H 0.14 2.96 6.30 -2.91 -0.02 2.94 16 34 H 0.07 1.98 7.66 -2.39 -0.02 1.96 16 35 H 0.11 2.54 7.66 -2.38 -0.02 2.52 16 36 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.05 1.98 8.14 -2.39 -0.02 1.97 16 38 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -63.72 333.54 6.36 -57.36 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: 1.05 Total: 8.08 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 4.86 Total: -15.50 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: 0.66 Total: -73.22 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -2.23 Total: -21.30 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -63.72 6.36 -57.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414150967.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.539 kcal (2) G-P(sol) polarization free energy of solvation -63.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds