Wall clock time and date at job start Mon Mar 30 2020 01:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99640 * 2 1 4 4 H 1.08994 * 109.47681 * 20.32085 * 3 2 1 5 5 C 1.50700 * 109.47336 * 140.32824 * 3 2 1 6 6 O 1.21280 * 119.99884 * 54.55344 * 5 3 2 7 7 N 1.34769 * 120.00136 * 234.83368 * 5 3 2 8 8 C 1.37136 * 120.00184 * 198.42186 * 7 5 3 9 9 H 1.08005 * 119.99790 * 238.82211 * 8 7 5 10 10 C 1.38895 * 120.00096 * 58.82222 * 8 7 5 11 11 N 1.31413 * 120.00178 * 44.69885 * 10 8 7 12 12 Si 1.86799 * 119.99672 * 224.69799 * 10 8 7 13 13 H 1.48500 * 109.47422 * 90.00170 * 12 10 8 14 14 H 1.48502 * 109.47154 * 209.99861 * 12 10 8 15 15 H 1.48503 * 109.47446 * 329.99936 * 12 10 8 16 16 C 1.39786 * 120.00065 * 18.41759 * 7 5 3 17 17 C 1.38959 * 120.07917 * 278.23722 * 16 7 5 18 18 C 1.38089 * 119.92438 * 179.78885 * 17 16 7 19 19 C 1.38309 * 120.07156 * 0.46624 * 18 17 16 20 20 C 1.38306 * 120.15848 * 359.78123 * 19 18 17 21 21 C 1.38078 * 120.07933 * 359.97438 * 20 19 18 22 22 C 1.53008 * 109.46883 * 260.32554 * 3 2 1 23 23 C 1.53002 * 117.49758 * 350.91950 * 22 3 2 24 24 C 1.52998 * 117.49725 * 282.26187 * 22 3 2 25 25 H 1.08996 * 109.47539 * 303.72264 * 1 2 3 26 26 H 1.09004 * 109.46838 * 63.72341 * 1 2 3 27 27 H 1.08997 * 109.46770 * 183.71677 * 1 2 3 28 28 H 0.97002 * 120.00527 * 184.98530 * 11 10 8 29 29 H 1.07999 * 120.04246 * 0.02562 * 17 16 7 30 30 H 1.07997 * 119.96582 * 180.22643 * 18 17 16 31 31 H 1.08007 * 119.91753 * 179.77059 * 19 18 17 32 32 H 1.08006 * 119.95687 * 179.97438 * 20 19 18 33 33 H 1.08000 * 120.04168 * 179.97438 * 21 20 19 34 34 H 1.08998 * 115.55160 * 136.58921 * 22 3 2 35 35 H 1.09001 * 117.49754 * 0.02562 * 23 22 3 36 36 H 1.09002 * 117.49948 * 145.01976 * 23 22 3 37 37 H 1.09008 * 117.49718 * 214.97846 * 24 22 3 38 38 H 1.08994 * 117.50127 * 359.97367 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2776 2.0294 0.3569 5 6 3.2135 1.3197 0.9070 6 8 4.1060 0.5151 0.7430 7 7 3.2954 2.2229 1.9039 8 6 4.5082 2.4989 2.4813 9 1 4.6493 2.3451 3.5410 10 6 5.5552 2.9762 1.7034 11 7 5.3386 3.9258 0.8212 12 14 7.2713 2.2683 1.9113 13 1 7.4449 1.1133 0.9942 14 1 8.2791 3.3108 1.5904 15 1 7.4545 1.8181 3.3145 16 6 2.1439 2.8785 2.3494 17 6 1.6595 3.9824 1.6581 18 6 0.5193 4.6249 2.0985 19 6 -0.1349 4.1768 3.2317 20 6 0.3473 3.0816 3.9251 21 6 1.4841 2.4312 3.4876 22 6 2.4390 1.6728 -1.4221 23 6 2.3846 0.5717 -2.4830 24 6 3.7356 1.0559 -1.9505 25 1 -0.3634 0.5705 0.8547 26 1 -0.3633 0.4550 -0.9215 27 1 -0.3633 -1.0255 0.0666 28 1 6.0520 4.2088 0.2280 29 1 2.1720 4.3351 0.7753 30 1 0.1402 5.4807 1.5597 31 1 -1.0244 4.6836 3.5760 32 1 -0.1659 2.7347 4.8098 33 1 1.8603 1.5763 4.0297 34 1 2.1995 2.6882 -1.7379 35 1 2.0429 -0.4143 -2.1679 36 1 2.1097 0.8627 -3.4968 37 1 4.3490 1.6654 -2.6142 38 1 4.2833 0.3888 -1.2849 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415068883.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:14 Heat of formation + Delta-G solvation = -3.168004 kcal Electronic energy + Delta-G solvation = -22285.656995 eV Core-core repulsion = 19095.212757 eV Total energy + Delta-G solvation = -3190.444238 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.81362 -38.32804 -36.92699 -35.46544 -34.30119 -32.19994 -30.39010 -28.74752 -28.42705 -25.93411 -24.54792 -22.10445 -21.93481 -21.77278 -20.70209 -19.13025 -17.48381 -16.74726 -16.18109 -15.85379 -15.57690 -15.00083 -14.42042 -14.26211 -14.18775 -13.98782 -13.58463 -12.88435 -12.83169 -12.74341 -12.11791 -12.08971 -11.73589 -11.40354 -11.21115 -11.09093 -10.96912 -10.73199 -10.61495 -10.52945 -10.26741 -9.91518 -9.80229 -9.42269 -8.67886 -8.46989 -8.39878 -7.80696 -7.49377 -6.45832 -4.11069 1.90723 1.93758 3.27470 3.40069 3.48521 3.58315 3.98126 4.29070 4.36375 4.46871 4.88390 4.98713 5.18057 5.38058 5.39805 5.45544 5.50592 5.58143 5.61657 5.63681 5.79285 5.82576 5.95736 5.97318 6.03625 6.12525 6.15741 6.42025 6.47294 6.58966 6.65892 6.91020 7.00111 7.00694 7.30446 7.40864 7.51196 7.53758 8.25240 8.84326 8.96874 9.35302 9.96154 10.50604 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.012643 B = 0.010321 C = 0.006822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.148636 B = 2712.213160 C = 4103.568757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.099 3.901 4 H 0.077 0.923 5 C 0.511 3.489 6 O -0.530 6.530 7 N -0.421 5.421 8 C -0.363 4.363 9 H 0.079 0.921 10 C 0.096 3.904 11 N -0.810 5.810 12 Si 0.887 3.113 13 H -0.268 1.268 14 H -0.291 1.291 15 H -0.268 1.268 16 C 0.161 3.839 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.143 4.143 20 C -0.118 4.118 21 C -0.129 4.129 22 C -0.170 4.170 23 C -0.170 4.170 24 C -0.166 4.166 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.268 0.732 29 H 0.126 0.874 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.031 -0.381 -1.804 11.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C 0.037 3.963 4 H 0.095 0.905 5 C 0.299 3.701 6 O -0.408 6.408 7 N -0.142 5.142 8 C -0.486 4.486 9 H 0.096 0.904 10 C -0.118 4.118 11 N -0.440 5.440 12 Si 0.712 3.288 13 H -0.193 1.193 14 H -0.218 1.218 15 H -0.192 1.192 16 C 0.071 3.929 17 C -0.139 4.139 18 C -0.139 4.139 19 C -0.161 4.161 20 C -0.137 4.137 21 C -0.149 4.149 22 C -0.189 4.189 23 C -0.207 4.207 24 C -0.202 4.202 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.144 0.856 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.351 -0.798 -1.992 10.571 hybrid contribution 0.596 0.375 -0.041 0.705 sum -9.755 -0.423 -2.034 9.974 Atomic orbital electron populations 1.22814 0.81823 1.02228 0.99855 1.87964 1.18837 1.26601 1.94755 1.21722 0.95354 0.85315 0.93878 0.90499 1.20042 0.87059 0.80823 0.82212 1.90441 1.41927 1.37533 1.70848 1.40884 1.04537 1.35066 1.33749 1.18613 0.85699 1.49117 0.95186 0.90366 1.25280 1.00250 0.90637 0.95638 1.70368 1.35991 1.17620 1.20018 0.86645 0.82552 0.79879 0.79767 1.19320 1.21765 1.19212 1.18506 0.88087 0.92676 0.93650 1.21661 0.95876 0.95144 1.01230 1.21004 0.96072 0.99743 0.97049 1.20972 1.00532 0.97963 0.96664 1.20911 0.96639 0.96450 0.99686 1.21398 0.95628 1.00664 0.97165 1.22458 1.05038 0.97834 0.93529 1.22848 1.02247 0.99147 0.96412 1.23221 0.90331 1.03614 1.03058 0.94099 0.94221 0.89928 0.92181 0.85591 0.86701 0.86916 0.86681 0.86317 0.87784 0.88091 0.89848 0.89878 0.85961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.82 101.05 1.09 1.52 16 2 O -0.36 -7.09 8.73 -44.77 -0.39 -7.48 16 3 C 0.10 2.04 2.78 -27.88 -0.08 1.96 16 4 H 0.08 1.50 4.99 -51.93 -0.26 1.24 16 5 C 0.51 12.86 6.03 -10.99 -0.07 12.79 16 6 O -0.53 -14.97 14.24 -3.98 -0.06 -15.03 16 7 N -0.42 -10.64 2.55 -58.98 -0.15 -10.79 16 8 C -0.36 -10.05 8.51 -14.94 -0.13 -10.18 16 9 H 0.08 2.19 8.06 -52.48 -0.42 1.76 16 10 C 0.10 2.64 4.74 -17.49 -0.08 2.55 16 11 N -0.81 -22.17 13.91 55.49 0.77 -21.40 16 12 Si 0.89 21.81 29.69 -169.99 -5.05 16.76 16 13 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 16 C 0.16 3.50 3.94 -83.70 -0.33 3.17 16 17 C -0.12 -2.36 8.51 -39.37 -0.34 -2.70 16 18 C -0.12 -1.93 10.04 -39.61 -0.40 -2.33 16 19 C -0.14 -2.11 10.04 -39.53 -0.40 -2.50 16 20 C -0.12 -1.85 10.04 -39.61 -0.40 -2.24 16 21 C -0.13 -2.47 9.97 -39.37 -0.39 -2.86 16 22 C -0.17 -3.26 6.04 -90.62 -0.55 -3.81 16 23 C -0.17 -2.85 9.86 -26.69 -0.26 -3.11 16 24 C -0.17 -3.32 9.60 -26.70 -0.26 -3.58 16 25 H 0.04 0.57 8.03 -51.93 -0.42 0.15 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.27 6.94 8.32 -40.82 -0.34 6.60 16 29 H 0.13 2.66 8.06 -52.49 -0.42 2.24 16 30 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 32 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 33 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 34 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 35 H 0.10 1.73 7.07 -51.93 -0.37 1.36 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.08 1.55 8.14 -51.92 -0.42 1.13 16 38 H 0.12 2.87 5.74 -51.93 -0.30 2.58 16 LS Contribution 324.56 15.07 4.89 4.89 Total: -1.00 -30.93 324.56 -7.69 -38.62 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.13 Total: 5.73 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -2.58 Total: -11.31 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.62 Total: -32.18 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.45 Total: -22.51 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.05 Total: 16.76 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.93 -7.69 -38.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415068883.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.448 kcal (2) G-P(sol) polarization free energy of solvation -30.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds