Wall clock time and date at job start Mon Mar 30 2020 01:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99640 * 2 1 4 4 H 1.08994 * 109.47681 * 20.32085 * 3 2 1 5 5 C 1.50700 * 109.47336 * 140.32824 * 3 2 1 6 6 O 1.21280 * 119.99884 * 54.55344 * 5 3 2 7 7 N 1.34769 * 120.00136 * 234.83368 * 5 3 2 8 8 C 1.37136 * 120.00184 * 198.42186 * 7 5 3 9 9 H 1.08005 * 119.99790 * 238.82211 * 8 7 5 10 10 C 1.38895 * 120.00096 * 58.82222 * 8 7 5 11 11 N 1.31413 * 120.00178 * 44.69885 * 10 8 7 12 12 Si 1.86799 * 119.99672 * 224.69799 * 10 8 7 13 13 H 1.48500 * 109.47422 * 90.00170 * 12 10 8 14 14 H 1.48502 * 109.47154 * 209.99861 * 12 10 8 15 15 H 1.48503 * 109.47446 * 329.99936 * 12 10 8 16 16 C 1.39786 * 120.00065 * 18.41759 * 7 5 3 17 17 C 1.38959 * 120.07917 * 278.23722 * 16 7 5 18 18 C 1.38089 * 119.92438 * 179.78885 * 17 16 7 19 19 C 1.38309 * 120.07156 * 0.46624 * 18 17 16 20 20 C 1.38306 * 120.15848 * 359.78123 * 19 18 17 21 21 C 1.38078 * 120.07933 * 359.97438 * 20 19 18 22 22 C 1.53008 * 109.46883 * 260.32554 * 3 2 1 23 23 C 1.53002 * 117.49758 * 350.91950 * 22 3 2 24 24 C 1.52998 * 117.49725 * 282.26187 * 22 3 2 25 25 H 1.08996 * 109.47539 * 303.72264 * 1 2 3 26 26 H 1.09004 * 109.46838 * 63.72341 * 1 2 3 27 27 H 1.08997 * 109.46770 * 183.71677 * 1 2 3 28 28 H 0.97002 * 120.00527 * 184.98530 * 11 10 8 29 29 H 1.07999 * 120.04246 * 0.02562 * 17 16 7 30 30 H 1.07997 * 119.96582 * 180.22643 * 18 17 16 31 31 H 1.08007 * 119.91753 * 179.77059 * 19 18 17 32 32 H 1.08006 * 119.95687 * 179.97438 * 20 19 18 33 33 H 1.08000 * 120.04168 * 179.97438 * 21 20 19 34 34 H 1.08998 * 115.55160 * 136.58921 * 22 3 2 35 35 H 1.09001 * 117.49754 * 0.02562 * 23 22 3 36 36 H 1.09002 * 117.49948 * 145.01976 * 23 22 3 37 37 H 1.09008 * 117.49718 * 214.97846 * 24 22 3 38 38 H 1.08994 * 117.50127 * 359.97367 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2776 2.0294 0.3569 5 6 3.2135 1.3197 0.9070 6 8 4.1060 0.5151 0.7430 7 7 3.2954 2.2229 1.9039 8 6 4.5082 2.4989 2.4813 9 1 4.6493 2.3451 3.5410 10 6 5.5552 2.9762 1.7034 11 7 5.3386 3.9258 0.8212 12 14 7.2713 2.2683 1.9113 13 1 7.4449 1.1133 0.9942 14 1 8.2791 3.3108 1.5904 15 1 7.4545 1.8181 3.3145 16 6 2.1439 2.8785 2.3494 17 6 1.6595 3.9824 1.6581 18 6 0.5193 4.6249 2.0985 19 6 -0.1349 4.1768 3.2317 20 6 0.3473 3.0816 3.9251 21 6 1.4841 2.4312 3.4876 22 6 2.4390 1.6728 -1.4221 23 6 2.3846 0.5717 -2.4830 24 6 3.7356 1.0559 -1.9505 25 1 -0.3634 0.5705 0.8547 26 1 -0.3633 0.4550 -0.9215 27 1 -0.3633 -1.0255 0.0666 28 1 6.0520 4.2088 0.2280 29 1 2.1720 4.3351 0.7753 30 1 0.1402 5.4807 1.5597 31 1 -1.0244 4.6836 3.5760 32 1 -0.1659 2.7347 4.8098 33 1 1.8603 1.5763 4.0297 34 1 2.1995 2.6882 -1.7379 35 1 2.0429 -0.4143 -2.1679 36 1 2.1097 0.8627 -3.4968 37 1 4.3490 1.6654 -2.6142 38 1 4.2833 0.3888 -1.2849 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415068883.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:13 Heat of formation + Delta-G solvation = -20.834926 kcal Electronic energy + Delta-G solvation = -22286.423090 eV Core-core repulsion = 19095.212757 eV Total energy + Delta-G solvation = -3191.210333 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.48747 -39.77916 -38.59209 -36.92661 -36.15638 -34.18293 -31.75680 -30.29947 -29.99525 -27.31383 -26.38750 -23.67340 -23.31437 -23.24675 -22.30221 -20.82079 -19.27829 -18.37535 -17.76478 -17.39925 -16.95922 -16.90133 -16.03495 -15.94064 -15.69300 -15.54687 -14.98950 -14.45953 -14.38058 -14.19812 -13.86037 -13.65965 -13.40239 -13.24658 -12.79565 -12.74201 -12.49888 -12.29363 -12.24868 -12.09516 -11.95159 -11.45270 -11.25108 -10.88503 -10.64882 -10.26719 -9.75927 -9.47813 -9.36618 -8.50531 -6.21929 0.51759 0.57194 1.25062 1.38859 1.45920 1.80982 2.16163 2.53960 2.79431 2.91816 2.97518 3.38583 3.65776 3.89037 3.96198 4.17026 4.21475 4.22822 4.29980 4.37262 4.45402 4.55747 4.59985 4.68747 4.77836 4.79244 4.82270 4.93227 5.02451 5.22919 5.25037 5.36964 5.39325 5.59792 5.67628 5.83324 6.04107 6.15259 6.24022 6.84384 7.00986 7.41244 8.02099 8.42956 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.012643 B = 0.010321 C = 0.006822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.148636 B = 2712.213160 C = 4103.568757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.388 6.388 3 C 0.113 3.887 4 H 0.087 0.913 5 C 0.496 3.504 6 O -0.578 6.578 7 N -0.428 5.428 8 C -0.387 4.387 9 H 0.061 0.939 10 C 0.066 3.934 11 N -0.828 5.828 12 Si 0.929 3.071 13 H -0.290 1.290 14 H -0.271 1.271 15 H -0.262 1.262 16 C 0.123 3.877 17 C -0.135 4.135 18 C -0.110 4.110 19 C -0.124 4.124 20 C -0.106 4.106 21 C -0.147 4.147 22 C -0.181 4.181 23 C -0.128 4.128 24 C -0.193 4.193 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.106 0.894 28 H 0.272 0.728 29 H 0.102 0.898 30 H 0.149 0.851 31 H 0.161 0.839 32 H 0.152 0.848 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.311 0.774 -1.928 14.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.307 6.307 3 C 0.052 3.948 4 H 0.105 0.895 5 C 0.285 3.715 6 O -0.460 6.460 7 N -0.149 5.149 8 C -0.511 4.511 9 H 0.079 0.921 10 C -0.146 4.146 11 N -0.459 5.459 12 Si 0.753 3.247 13 H -0.216 1.216 14 H -0.197 1.197 15 H -0.186 1.186 16 C 0.033 3.967 17 C -0.155 4.155 18 C -0.129 4.129 19 C -0.142 4.142 20 C -0.124 4.124 21 C -0.167 4.167 22 C -0.200 4.200 23 C -0.165 4.165 24 C -0.230 4.230 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.125 0.875 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.166 0.834 31 H 0.178 0.822 32 H 0.170 0.830 33 H 0.123 0.877 34 H 0.135 0.865 35 H 0.117 0.883 36 H 0.140 0.860 37 H 0.109 0.891 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.654 0.386 -2.095 13.819 hybrid contribution 1.458 -0.003 0.086 1.461 sum -12.196 0.384 -2.009 12.366 Atomic orbital electron populations 1.23112 0.78978 1.04186 1.01084 1.87930 1.21906 1.25936 1.94879 1.21433 0.93659 0.86211 0.93486 0.89471 1.20935 0.88096 0.80011 0.82409 1.90401 1.43987 1.39388 1.72176 1.40931 1.05113 1.35297 1.33541 1.18605 0.88051 1.49659 0.94767 0.92130 1.25775 1.02368 0.90729 0.95753 1.70356 1.36807 1.18021 1.20696 0.85987 0.80409 0.78965 0.79334 1.21621 1.19651 1.18636 1.18641 0.88218 0.94228 0.95581 1.21508 0.97655 0.95346 1.00969 1.21361 0.94244 0.99832 0.97427 1.21498 1.01018 0.96712 0.94964 1.21307 0.94827 0.95867 1.00409 1.21444 0.97302 1.01236 0.96670 1.22575 1.04477 0.99371 0.93584 1.22914 0.98158 0.98084 0.97331 1.23066 0.91586 1.04466 1.03876 0.93756 0.92141 0.87534 0.91794 0.88008 0.83366 0.82168 0.82993 0.87673 0.86488 0.88298 0.86005 0.89124 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 10.82 113.37 1.23 1.81 16 2 O -0.39 -15.04 8.73 -139.86 -1.22 -16.26 16 3 C 0.11 4.75 2.78 29.85 0.08 4.84 16 4 H 0.09 3.40 4.99 -2.39 -0.01 3.39 16 5 C 0.50 26.21 6.03 87.66 0.53 26.73 16 6 O -0.58 -34.85 14.24 6.09 0.09 -34.76 16 7 N -0.43 -22.71 2.55 -458.90 -1.17 -23.88 16 8 C -0.39 -22.60 8.51 84.02 0.72 -21.88 16 9 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 10 C 0.07 3.78 4.74 84.91 0.40 4.18 16 11 N -0.83 -46.94 13.91 21.65 0.30 -46.64 16 12 Si 0.93 46.55 29.69 68.60 2.04 48.59 16 13 H -0.29 -15.44 7.11 99.48 0.71 -14.74 16 14 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 15 H -0.26 -12.76 7.11 99.48 0.71 -12.05 16 16 C 0.12 5.44 3.94 38.22 0.15 5.59 16 17 C -0.14 -5.29 8.51 22.41 0.19 -5.10 16 18 C -0.11 -3.16 10.04 22.25 0.22 -2.94 16 19 C -0.12 -3.02 10.04 22.30 0.22 -2.80 16 20 C -0.11 -2.93 10.04 22.25 0.22 -2.71 16 21 C -0.15 -5.58 9.97 22.41 0.22 -5.36 16 22 C -0.18 -6.93 6.04 -10.79 -0.07 -6.99 16 23 C -0.13 -4.09 9.86 30.62 0.30 -3.79 16 24 C -0.19 -7.95 9.60 30.62 0.29 -7.66 16 25 H 0.04 1.13 8.03 -2.39 -0.02 1.11 16 26 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 27 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.27 14.50 8.32 -92.71 -0.77 13.73 16 29 H 0.10 4.41 8.06 -2.91 -0.02 4.39 16 30 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 31 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 32 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 33 H 0.11 4.15 8.06 -2.91 -0.02 4.12 16 34 H 0.12 4.11 8.14 -2.39 -0.02 4.09 16 35 H 0.10 3.23 7.07 -2.39 -0.02 3.21 16 36 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 37 H 0.09 3.48 8.14 -2.38 -0.02 3.46 16 38 H 0.08 4.10 5.74 -2.39 -0.01 4.08 16 Total: -1.00 -72.96 324.56 5.81 -67.16 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 1.05 Total: 21.87 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 4.72 Total: -16.07 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -0.87 Total: -70.52 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: -1.13 Total: -51.02 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.04 Total: 48.59 kcal Total: -72.96 5.81 -67.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415068883.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.322 kcal (2) G-P(sol) polarization free energy of solvation -72.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds