Wall clock time and date at job start Mon Mar 30 2020 01:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99983 * 2 1 4 4 H 1.09004 * 109.46900 * 30.00373 * 3 2 1 5 5 C 1.50696 * 109.47352 * 270.00385 * 3 2 1 6 6 O 1.21283 * 119.99743 * 345.34819 * 5 3 2 7 7 N 1.34774 * 120.00405 * 165.34896 * 5 3 2 8 8 C 1.37137 * 120.00349 * 211.76589 * 7 5 3 9 9 H 1.07993 * 120.00367 * 202.34747 * 8 7 5 10 10 C 1.38895 * 119.99809 * 22.34685 * 8 7 5 11 11 N 1.31426 * 119.99699 * 12.86054 * 10 8 7 12 12 Si 1.86795 * 120.00086 * 192.86350 * 10 8 7 13 13 H 1.48505 * 109.46963 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47610 * 119.99843 * 12 10 8 15 15 H 1.48503 * 109.47179 * 239.99943 * 12 10 8 16 16 C 1.39793 * 119.99916 * 31.76903 * 7 5 3 17 17 C 1.38951 * 120.07683 * 146.42641 * 16 7 5 18 18 C 1.38088 * 119.92149 * 179.97438 * 17 16 7 19 19 C 1.38307 * 120.07383 * 0.02562 * 18 17 16 20 20 C 1.38302 * 120.16182 * 359.97438 * 19 18 17 21 21 C 1.38088 * 120.07471 * 359.97438 * 20 19 18 22 22 C 1.52999 * 109.47253 * 149.99962 * 3 2 1 23 23 C 1.53004 * 117.50133 * 1.52487 * 22 3 2 24 24 C 1.52999 * 117.50119 * 292.86275 * 22 3 2 25 25 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46931 * 299.99688 * 1 2 3 27 27 H 1.08998 * 109.47263 * 60.00289 * 1 2 3 28 28 H 0.97001 * 119.99594 * 184.97888 * 11 10 8 29 29 H 1.08001 * 120.04521 * 359.71040 * 17 16 7 30 30 H 1.07997 * 119.96151 * 179.97438 * 18 17 16 31 31 H 1.08004 * 119.91932 * 179.97438 * 19 18 17 32 32 H 1.07998 * 119.96476 * 180.02562 * 20 19 18 33 33 H 1.08001 * 120.03705 * 179.97438 * 21 20 19 34 34 H 1.09004 * 115.55273 * 147.19300 * 22 3 2 35 35 H 1.09009 * 117.49474 * 359.97438 * 23 22 3 36 36 H 1.08996 * 117.50213 * 145.01664 * 23 22 3 37 37 H 1.08998 * 117.50226 * 214.98173 * 24 22 3 38 38 H 1.09007 * 117.49744 * 0.02562 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2144 1.7645 -1.4208 6 8 2.1496 0.9658 -2.3312 7 7 2.4691 3.0623 -1.6797 8 6 2.0333 3.6262 -2.8514 9 1 2.5146 4.5134 -3.2355 10 6 0.9729 3.0562 -3.5441 11 7 0.2268 2.1413 -2.9665 12 14 0.6073 3.5899 -5.2964 13 1 1.5862 4.6263 -5.7126 14 1 0.7110 2.4182 -6.2027 15 1 -0.7661 4.1503 -5.3669 16 6 3.1776 3.8338 -0.7539 17 6 4.0271 4.8421 -1.1927 18 6 4.7250 5.6025 -0.2754 19 6 4.5796 5.3612 1.0786 20 6 3.7350 4.3585 1.5190 21 6 3.0332 3.5948 0.6073 22 6 3.3589 1.2633 0.7212 23 6 3.8357 -0.0913 1.2492 24 6 3.3473 0.9821 2.2251 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.4676 1.6914 -3.4728 29 1 4.1447 5.0280 -2.2501 30 1 5.3858 6.3861 -0.6158 31 1 5.1270 5.9572 1.7939 32 1 3.6235 4.1730 2.5771 33 1 2.3741 2.8117 0.9518 34 1 4.1157 1.9510 0.3437 35 1 3.1883 -0.9524 1.0830 36 1 4.9061 -0.2947 1.2192 37 1 4.0966 1.4844 2.8369 38 1 2.3788 0.8267 2.7007 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415068884.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:17 Heat of formation + Delta-G solvation = 38.071337 kcal Electronic energy + Delta-G solvation = -22559.391409 eV Core-core repulsion = 19370.735443 eV Total energy + Delta-G solvation = -3188.655966 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.39313 -37.91279 -37.18751 -35.59067 -34.16725 -32.20507 -30.63478 -28.62744 -28.18512 -25.89619 -24.70484 -22.20634 -21.78110 -21.66926 -20.62279 -19.43186 -17.38004 -17.02780 -16.37968 -15.65050 -15.06388 -14.81038 -14.49487 -14.38912 -14.01952 -13.59292 -13.35093 -13.19055 -12.81853 -12.43458 -12.16962 -12.05853 -11.57527 -11.18337 -11.11877 -11.04390 -10.85832 -10.71930 -10.51143 -10.27887 -10.09658 -10.01673 -9.73576 -9.67447 -9.53488 -8.59882 -8.15174 -7.86489 -7.01667 -6.29961 -3.96670 2.05903 2.08217 3.20357 3.27566 3.30664 3.89816 3.95093 4.16177 4.39920 4.56103 4.72633 5.06945 5.21808 5.26408 5.35175 5.52133 5.52409 5.62495 5.81256 5.82951 5.87082 5.94297 5.98092 6.08398 6.13289 6.25003 6.27735 6.45230 6.49404 6.60057 6.64453 6.68800 7.06637 7.16912 7.21750 7.39096 7.57938 7.69082 7.97558 8.74401 8.98124 9.39292 9.90835 10.72899 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.014729 B = 0.009768 C = 0.006372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.495889 B = 2865.788498 C = 4393.139446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.363 6.363 3 C 0.106 3.894 4 H 0.081 0.919 5 C 0.491 3.509 6 O -0.474 6.474 7 N -0.422 5.422 8 C -0.333 4.333 9 H 0.096 0.904 10 C 0.043 3.957 11 N -0.839 5.839 12 Si 0.926 3.074 13 H -0.270 1.270 14 H -0.280 1.280 15 H -0.283 1.283 16 C 0.179 3.821 17 C -0.160 4.160 18 C -0.097 4.097 19 C -0.181 4.181 20 C -0.097 4.097 21 C -0.200 4.200 22 C -0.149 4.149 23 C -0.167 4.167 24 C -0.176 4.176 25 H 0.076 0.924 26 H 0.028 0.972 27 H 0.068 0.932 28 H 0.269 0.731 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.149 0.851 34 H 0.125 0.875 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.742 1.362 9.394 10.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.281 6.281 3 C 0.044 3.956 4 H 0.099 0.901 5 C 0.279 3.721 6 O -0.345 6.345 7 N -0.133 5.133 8 C -0.459 4.459 9 H 0.113 0.887 10 C -0.165 4.165 11 N -0.475 5.475 12 Si 0.752 3.248 13 H -0.194 1.194 14 H -0.206 1.206 15 H -0.209 1.209 16 C 0.078 3.922 17 C -0.182 4.182 18 C -0.116 4.116 19 C -0.200 4.200 20 C -0.116 4.116 21 C -0.220 4.220 22 C -0.167 4.167 23 C -0.203 4.203 24 C -0.213 4.213 25 H 0.094 0.906 26 H 0.047 0.953 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.139 0.861 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.166 0.834 34 H 0.143 0.857 35 H 0.123 0.877 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.512 0.522 8.761 9.453 hybrid contribution -0.526 0.561 -0.898 1.182 sum 2.986 1.083 7.863 8.480 Atomic orbital electron populations 1.22820 0.81133 1.01861 1.00937 1.87822 1.19691 1.25929 1.94638 1.22011 0.93487 0.85398 0.94685 0.90130 1.19997 0.80626 0.81652 0.89834 1.90482 1.45035 1.52094 1.46911 1.41372 1.48235 1.07058 1.16672 1.19424 1.13328 1.12535 1.00610 0.88671 1.25065 0.94398 0.96904 1.00149 1.69790 1.18019 1.23815 1.35888 0.85899 0.77967 0.78386 0.82508 1.19428 1.20601 1.20928 1.18182 0.93008 0.92022 0.88986 1.20840 0.98541 0.98968 0.99837 1.20800 0.98955 0.98739 0.93121 1.20770 1.03107 1.00830 0.95341 1.20727 0.96885 0.95605 0.98346 1.22109 1.04379 1.03492 0.92055 1.22617 0.97959 1.00567 0.95600 1.22960 1.00802 0.93788 1.02791 1.22998 1.02760 1.03889 0.91682 0.90583 0.95301 0.91360 0.91988 0.86115 0.87109 0.87491 0.87043 0.83386 0.85750 0.87737 0.89405 0.88805 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.81 101.05 1.09 1.63 16 2 O -0.36 -7.62 8.29 -54.70 -0.45 -8.07 16 3 C 0.11 2.22 1.97 -27.89 -0.05 2.16 16 4 H 0.08 1.66 5.94 -51.93 -0.31 1.35 16 5 C 0.49 12.66 5.14 -10.99 -0.06 12.60 16 6 O -0.47 -14.09 14.38 -13.92 -0.20 -14.29 16 7 N -0.42 -10.72 2.85 -58.98 -0.17 -10.89 16 8 C -0.33 -8.97 9.12 -14.94 -0.14 -9.11 16 9 H 0.10 2.44 6.49 -52.49 -0.34 2.10 16 10 C 0.04 1.16 4.77 -17.48 -0.08 1.08 16 11 N -0.84 -23.55 10.12 55.49 0.56 -22.99 16 12 Si 0.93 21.26 29.57 -169.99 -5.03 16.24 16 13 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 C 0.18 3.86 5.41 -83.70 -0.45 3.41 16 17 C -0.16 -3.16 9.29 -39.37 -0.37 -3.52 16 18 C -0.10 -1.59 10.04 -39.61 -0.40 -1.99 16 19 C -0.18 -2.75 10.04 -39.53 -0.40 -3.15 16 20 C -0.10 -1.52 10.04 -39.61 -0.40 -1.92 16 21 C -0.20 -3.70 5.65 -39.37 -0.22 -3.93 16 22 C -0.15 -2.65 3.16 -90.62 -0.29 -2.94 16 23 C -0.17 -2.61 9.87 -26.69 -0.26 -2.87 16 24 C -0.18 -2.46 9.70 -26.69 -0.26 -2.72 16 25 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.03 0.46 8.08 -51.93 -0.42 0.04 16 27 H 0.07 1.49 7.94 -51.93 -0.41 1.08 16 28 H 0.27 7.28 8.32 -40.82 -0.34 6.94 16 29 H 0.12 2.40 6.81 -52.49 -0.36 2.05 16 30 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.11 1.34 8.06 -52.48 -0.42 0.91 16 32 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.15 2.71 2.32 -52.50 -0.12 2.59 16 34 H 0.12 2.36 5.52 -51.93 -0.29 2.07 16 35 H 0.10 1.73 7.02 -51.92 -0.36 1.37 16 36 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 1.22 8.14 -51.92 -0.42 0.79 16 LS Contribution 306.73 15.07 4.62 4.62 Total: -1.00 -31.01 306.73 -7.65 -38.66 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -4.71 Total: 7.98 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -2.28 Total: -11.26 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.39 Total: -33.88 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.65 Total: -22.36 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.01 -7.65 -38.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415068884.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.730 kcal (2) G-P(sol) polarization free energy of solvation -31.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds